Gene Details:

  • Gene ID: Araip.5450Y
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Arachis ipaensis
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_015949087.1  — B3 domain-containing transcription repressor VAL1 isoform X1
  • Refseq:  XP_015949092.1  — B3 domain-containing transcription repressor VAL1 isoform X1
  • Refseq:  XP_015949101.1  — B3 domain-containing transcription repressor VAL1 isoform X1
  • Refseq:  XP_025692072.1  — B3 domain-containing transcription repressor VAL1 isoform X1
  • Refseq:  XP_025692076.1  — B3 domain-containing transcription repressor VAL1 isoform X1
  • Refseq:  XP_025692081.1  — B3 domain-containing transcription repressor VAL1 isoform X1
  • TrEMBL:  A0A445AMD5  — A0A445AMD5_ARAHY; Uncharacterized protein
  • STRING:  GLYMA11G31234.1  — (Glycine max)

Gene Ontology:

  • GO:0010030  — Biological Process — positive regulation of seed germination
  • GO:0045892  — Biological Process — negative regulation of transcription, DNA-templated
  • GO:2000034  — Biological Process — regulation of seed maturation
  • GO:0005634  — Cellular Component — nucleus
  • GO:0005739  — Cellular Component — mitochondrion
  • GO:0003677  — Molecular Function — DNA binding
  • GO:0008270  — Molecular Function — zinc ion binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >Araip.5450Y|Arachis_ipaensis|B3|Araip.5450Y
    ATGGGTTCCGACATTTGCGTCAATGGTTCTTGCTGCGTGCACGAATGGAAGAAGGGATGGCCTCTACGATCTGGTGGATTCGCCCAACTATGCATCAAGTGCGGATTTATGGAGGAATGGAAGCGTGAGATAATTGATACATTATCTGCAAATGAGTATTCACTATTCTGTAATAACTTCCACCGTCGCGATACTGGATGGAAGGAGTGTAACTTTTGCAACAAGCCTATCCATTGTGGATGCATAGTATCTAAATCTTTGTTCGAGTACCTTGACTTTGGCGGTGTAGGATGTGTTAGCTGTGTAAATGCTTCCCAACTACGTTTGACGAGGAATACTGAAAATGGGTCTGTTTCGACTACTAAAAATAATGCAAGTGATCGGCATTCTGCTCATATTGACAACAGACAGTTTGTCAGTAGCGTGGATGAAGGAAAACTTATGGAGTTCTGCAGAATTGTTGAAGCTAGCGAATCAAGCCGTTGGAATCATGCTCAGAGAGACAACATAATCTCATGTAATGGGCAAAATGGCAAAGAAGTGACATTCAGGGAAGTGGAAAGTGGATTTTCAAATGTGATAAAGCCATCGGTTCAGTCATTAACGTTTTCTGCTTTAGAAAATAGTAGACCGACATGGGAGATTAAAAATAGACATGAACCAATGACTCAACCATCTTTAAACATGTGTCTGGGAAATCCGTCTGGGAGCAACTTGGTACTGCCTTCAGCAACTGAGATTGCAGAAGGAAGACTTGAGAGCAAAGCCTCCAACTTTCAACAAAGATCTCGGCCCATATTGCCCAAACCATCGAAGACCGGACTTACTATGAATGTGGAAACAGACAAAGGCTCAACTTCTCAGGCACGCATTGCTCGACCACCTGCCGAGGGGAGGGGCAAAAACCAGTTGCTTCCTCGATACTGGCCCAGGATTACTGATCAAGAACTGGAGCGGTTGTCTGGAGATTTGAAGTCCACTGTAGTGCCGTTGTTTGAGAAGGTGTTGAGTGCTAGTGATGCTGGTCGAATTGGTCGACTTGTTCTCCCAAAAGCATGTGCCGAGGCTTATTTTCCTCATATTTCACAATCAGAAGGTCTTCCTTTACGGGTCCAAGACGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTCGGATGTATGTATTGGAGGGTGTGACACCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGAGATCTACCGTGCAAATCTGACGTTACCGGTTGTTTTATATGATTCTCTTGCTGCAGTTACATTTAGTCGGATAGACCCTGGGGGTAAACTTGTTATGGGTTTCAGGAGGGCGACAAATTCTTCAGACACCCAGGTTGATGCCTCTACATCTGCACAATCGAATGGTATTTCAACTACAGGAACCACCTCTGGTGGAACTGAGAATCTGCCATCAGGAAGTAATTATGCTGATCTTCTCCAGTCGGCGAAAGGGAATGGGGAACCTAATTCTAGTGGACATCCAGACCATCCACGTTCAGGTACTGGAGCTGCCGCTGTGCTTAAAACCGAAAATTGTGAGGAGATGATAAACAATCATTCCCTTAAGCAACCAATTCCAGTTTCAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTTATTGATAATGAAGATTCTATGGAGTTGAGACTTACCTGGGAAGAAGCACAGGACTTGCTTCGTCCGCCACCTAGTGTTAAGCCAAGTATTGTCACCATTGAGGACCAAATATTTGAAGAATATGATGAGCCCCCGGTTTTCGGAAAGAGGACTATTTTCAGTGCCTGTTCATCTGGGGGGAAGGAGCAGTGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCCGTCGATGCTCTTCTTCCTCCCAAGTGGAATTGCTCTGAGAATGTTTGGGATGCAAGCAGGGCTTCATGTTCTGCTCCAGAGGAGATGAGTTCAAGGGAATTAGAAAATCTTCTGAGAACCAACAAAGATCTTAAGAAGCGGAGAATTGCTGAGAATAATAAACCAATCCAAGAGCATGAGCCTTCTGGGTTGGATGCTCTTGCCAGTGCCGCGGTTTTAGGAGACAATCTTGTTGATCCTGTGGAGTCATCAGCTGGAGCCACCACCAGACACCCTAGACACCGTCCCGGCTGCTCCTGTATTGTGTGCATTCAACCACCAAGTGGAAAGGGGAGACACAAGCCAACATGTACTTGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTGATGCTTAGAAAGAAGAAGCGCCAATCGGAGCGCGAAGCAGATGCTGCTCAAAAAGGTCATATTCCCCGAAAAGACGAGTCAGATACCAATGGAAGAGCTTCAAGAGATTATCCTAAACCGAGTCACTCGGACAAAGAGGGAGGACTAAACAAAGATCAACAACCAGCCCATGTGGGAGAGTCGAATGCCGGACAAATAGACCTGAACTCGCATCCGAATCGCGACGACATGGCAGCCGATACATCGGCGCCTAGCACCTCGAATCATCTTGAAACAACAAACCGAGAGGTAAGGAACTATATGAATCAAAATGGTGTTAGAAGCTACAATAATGGTGAAGTGCAGGATAATCAGCATCCTTCTTTACTCAATCAATCTAATGGAGGGTGCTTTGGATCATCCATTGTGTGGAAAATGGAAAGAAAAGATGAGGGTGCTCAAAGTGGTCAAAGATAG
Protein Sequence:
  • >Araip.5450Y|Arachis_ipaensis|B3|Araip.5450Y
    MGSDICVNGSCCVHEWKKGWPLRSGGFAQLCIKCGFMEEWKREIIDTLSANEYSLFCNNFHRRDTGWKECNFCNKPIHCGCIVSKSLFEYLDFGGVGCVSCVNASQLRLTRNTENGSVSTTKNNASDRHSAHIDNRQFVSSVDEGKLMEFCRIVEASESSRWNHAQRDNIISCNGQNGKEVTFREVESGFSNVIKPSVQSLTFSALENSRPTWEIKNRHEPMTQPSLNMCLGNPSGSNLVLPSATEIAEGRLESKASNFQQRSRPILPKPSKTGLTMNVETDKGSTSQARIARPPAEGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTEIYRANLTLPVVLYDSLAAVTFSRIDPGGKLVMGFRRATNSSDTQVDASTSAQSNGISTTGTTSGGTENLPSGSNYADLLQSAKGNGEPNSSGHPDHPRSGTGAAAVLKTENCEEMINNHSLKQPIPVSEKKRTRNIGPKSKRLLIDNEDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQIFEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWNCSENVWDASRASCSAPEEMSSRELENLLRTNKDLKKRRIAENNKPIQEHEPSGLDALASAAVLGDNLVDPVESSAGATTRHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAQKGHIPRKDESDTNGRASRDYPKPSHSDKEGGLNKDQQPAHVGESNAGQIDLNSHPNRDDMAADTSAPSTSNHLETTNREVRNYMNQNGVRSYNNGEVQDNQHPSLLNQSNGGCFGSSIVWKMERKDEGAQSGQR