Information report for AHYPO_018675-RA
Gene Details
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Functional Annotation
- Refseq: XP_021766999.1 — B3 domain-containing transcription repressor VAL2-like
- Swissprot: Q6Z3U3 — Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
- TrEMBL: A0A0K9Q8H6 — A0A0K9Q8H6_SPIOL; Uncharacterized protein
- STRING: XP_010683488.1 — (Beta vulgaris)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Beta vulgaris: Bv7_157000_dced.t1
- Citrus sinensis: orange1.1g002708m, orange1.1g002702m
- Gossypium arboreum: Cotton_A_19984_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A10G1335, Gh_D10G1137, Gh_D02G0047, Gh_A02G0033
- Manihot esculenta: Manes.09G117700.1.p
- Populus trichocarpa: Potri.016G136500.2, Potri.016G136500.1, Potri.006G108300.1
- Prunus mume: XP_008244865.1, XP_008244859.1
- Prunus persica: Prupe.6G293400.1.p
- Ziziphus jujuba: XP_015897449.1, XP_015897448.1
Sequences
CDS Sequence:
- >AHYPO_018675-RA|Amaranthus_hypochondriacus|B3|AHYPO_018675-RA
ATGGCTTTGAAAACTTGTATGAATATTGTGTGTGGTACGACGTCGTCTACTGAATGGAAAACTGGTTGGAGTTTACGATCTGGTGAATTGGCTAATTTGTGTGATAAGTGCGGAGAGGATTCTGGCTGGAGAGAGTGTGTTACATGTGCCAAGCGACTCCACTGTGGATGCATAGCTTCATTGTCTTTGGTAGAGTTGCTTGACTGCGGTGGTGTGAGATGCATTGCCTGTGCAAGGAATTCAGGTCAAAGTTTGAACTCTGGGAAATGTGATGGATCTGGACCTTGTACTGTAACAGAAAATAACACTGGTGTAAAACAATCAGTCAAATATAAGGAATTAAATGGGAACAATCAGCTACCCATGATGCAAAATCCCAACTCAAATGTAGCTTTCGGGTTACCGAAACATGAACCTTTACCCTCTCTTGTTCAAGCTGGAACCACGTGGGTTCCAAATTTAGCTCAATCCTCGATAGGAATTTTTCAGAAGAGACCGGATAAATCTATGATTAGCATGCCAGGCAAAGATAACTTTGTACCAGTTGATTATCCGAACTTGAATATCACTTTGGGAGTTCCACCAGGAAATCATCAAGCTACATCCAATACTTTTGTTGATGAAAGGGACCAGAGAAAAATTTCAGACACTTTTCACCAAGGATTTGTATCCCCCAACCTTTTTCCAACATTTCCAAAGCTGGCTTTTTCTTCCATTGCTGAGACTAATCCAAGTGCGATGCCTCAACTACGTGTGGCAAGGCAACCTGTTGAGGGACGAGGCCGTCACCAACTGCTTCCTCGTTATTGGCCAAGGATTACAGACCAAGAGTTGCAGCAAATTACTGGAGACTCAAATTGTACAATTGTTCCCTTGTTTGAAAAGGTTTTGAGTGCTAGTGATGCTGGTCGAATAGGTCGTTTGGTTCTTCCTAAAGCATGTGCTGAAGCATATTTTCCGCCTATATCACAACCTGAAGGACTGCCGATCAAAATTCAAGATGTGAAGGGGAAAGAATGGTTGTTTCAATTTAGGTTTTGGCCCAACAACAACAGCAGGATGTATGTTTTAGAGGGAGTAACTCCATGTATACAGTCAATGCAGTTGCAAGCTGGTGATACTGTTACATTTAGTCGTATGGATCCTGAAGGGAAACTAGTTATGGGCTTCCGAAAAGCATCAAACTCTGCATCTGTTCAGGATGCTGCATCACCTGCCATCCGTAATGCCCCTCTTACAAGTGAATCTTTCTTTTCGGATGTTATTGAGAACCTACCTGTAATAAGTGGTTGCTCTGGCTTTCTCCAGTCAGTGAAAGGGAGCGCAGATGCCCATGTGAATGCTATGTCAAGACAACTGGACTCTGCTGGTGGCATTGTTCGATGGCATAATAGTGAAAAATGTAACGAACGCACTGAGGAAGGAATGTCACCTACTTCATTGCTGATGCTGGAAAGAAAAAAGAGCCGTAATATAGGGTCTAAGAGCAAGAGGTTGCTTATTGATAACCAAGATGTTCTGGCACTGAGATTGACATGGGAGGAGGTGCAGGGTATGCTTCGGCCTCCACAAAGTGCAACACCCAGTGTTGTTATGATTGAGGATTATGAATTTGAAGAATATGAAGAACCTCCAGTTTTTGGGAAGAACAGTATTTTCACTGGCCATTCATCTGGGGTAGTAGAGCAATGGGTTCAGTGTGACAATTGTGCTAAATGGCGGAGATTGCCTGGTGATATTTTGCTTCCTCCAAAGTGGGCATGTGCAGATAATTCTTGGGATCACAGCAGGTGCTTATGTTCCGCTCCAGAGGAATTGGGCCCTCGGGAACTTGAAAATTTCCGACAGCTAAGTAAGGATTCTACTACGAAGAGAAGAATGGTGATGCCTAATAGAATGACACAGGAACAGGAATCTTCTGGCCTAAATGCTTTAGCTACTGTAGCAACTTTAGGAGATAATACTACTGATCCAGGCACTTCATCAGTTGCCACGACCACAAAGCATCCGAGGCATCGTCCTGGTTGTTCATGCATTGTTTGCATTCAACCACCCAGTGGAAAGGGCAAACACAAATCAACATGCACGTGCACTGTCTGCATGACAGTGAAACGCCGTTTTAAGACCCTTATGATGAGAAAAAAGAAACGACAGTCTGAACAAGAAGCTGAAATTGCCTTGAAAAATCAACAACAGCAGAATCTTGTCATCCAAGAAAACGAGAAGTCTGAAGCCGAAATTAACAACCCTTTCCACCTTCAACTTCGGCGTGAAACTGAAAATGACTTGCAGGCAGGTGTGGGTCCCCCACAAATTAATGACTGTGAAGGGCAAACTCCAATCAGCTTGTTAACCAAAAGTGGCAAGAGCCTCAACCTAAATTTCCACCCTGAGCGTGAAGAAGACCTCAGGTTGAAGACTTCTGAATCGAGTTTAACGAATCTTCTCCAGCTAGCAAGCCTCCCTCTGGAGGCTTATATGAAGCAAAATGGCCTTACGAGCTTGTCATCTGAGCAGCAAGAGCAGCAAGCTCACTCCACGTCACAGCTAGGAAAAACTTCTGGAGACACTTCAGGGAATGCGGTTGACGATAATCCTGTTGGTCCAGGCCCAGACCAAGTGAATCCCAGTACCGGAAGCTGTGAACCAGAAAATTAA
Protein Sequence:
- >AHYPO_018675-RA|Amaranthus_hypochondriacus|B3|AHYPO_018675-RA
MALKTCMNIVCGTTSSTEWKTGWSLRSGELANLCDKCGEDSGWRECVTCAKRLHCGCIASLSLVELLDCGGVRCIACARNSGQSLNSGKCDGSGPCTVTENNTGVKQSVKYKELNGNNQLPMMQNPNSNVAFGLPKHEPLPSLVQAGTTWVPNLAQSSIGIFQKRPDKSMISMPGKDNFVPVDYPNLNITLGVPPGNHQATSNTFVDERDQRKISDTFHQGFVSPNLFPTFPKLAFSSIAETNPSAMPQLRVARQPVEGRGRHQLLPRYWPRITDQELQQITGDSNCTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPIKIQDVKGKEWLFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKASNSASVQDAASPAIRNAPLTSESFFSDVIENLPVISGCSGFLQSVKGSADAHVNAMSRQLDSAGGIVRWHNSEKCNERTEEGMSPTSLLMLERKKSRNIGSKSKRLLIDNQDVLALRLTWEEVQGMLRPPQSATPSVVMIEDYEFEEYEEPPVFGKNSIFTGHSSGVVEQWVQCDNCAKWRRLPGDILLPPKWACADNSWDHSRCLCSAPEELGPRELENFRQLSKDSTTKRRMVMPNRMTQEQESSGLNALATVATLGDNTTDPGTSSVATTTKHPRHRPGCSCIVCIQPPSGKGKHKSTCTCTVCMTVKRRFKTLMMRKKKRQSEQEAEIALKNQQQQNLVIQENEKSEAEINNPFHLQLRRETENDLQAGVGPPQINDCEGQTPISLLTKSGKSLNLNFHPEREEDLRLKTSESSLTNLLQLASLPLEAYMKQNGLTSLSSEQQEQQAHSTSQLGKTSGDTSGNAVDDNPVGPGPDQVNPSTGSCEPEN*