Gene Details:

  • Gene ID: AA52G00027
  • Gene Family: B3 Family
  • Description: B3 Family protein
  • Species: Aethionema arabicum
  • Source: B3 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_002884852.1  — B3 domain-containing protein At3g11580
  • Swissprot:  Q8RYD3  — Y3158_ARATH; B3 domain-containing protein At3g11580
  • TrEMBL:  D7LAP4  — D7LAP4_ARALL; Uncharacterized protein
  • STRING:  Cagra.1655s0012.1.p  — (Capsella grandiflora)
  • STRING:  Bostr.19424s1090.1.p  — (Boechera stricta)

Gene Ontology:

  • GO:0080113  — Biological Process — regulation of seed growth
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
  • GO:0043565  — Molecular Function — sequence-specific DNA binding
  • GO:0044212  — Molecular Function — transcription regulatory region DNA binding

Family Introduction:

  • The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
  • All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
  • The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.

Literature:

Sequences:

CDS Sequence:
  • >AA52G00027|Aethionema_arabicum|B3|AA52G00027
    ATGTCAGTCAACCATTACACACAAGAGCTTCATAATAATCTCTTCTCTAATAACCAAAACGACGCCGTATACAACAACCATAACCAATACGACGCCGTACAAAGCCAGAACCAATACGACGCCGTAAGAGTTTCTCTATTTGAGAAATCATTAACACCAAGACCGGCTTTAATGTTAAGTTTTGAAGATGAAACAACCGGGAAAAATTGGGAATTTAGATATTCATATTGGAACAGTAGTCAAAGTTATGTGTTGACTAAAGGTTGGAGTCGTTACGTTAAACATAAACGTCTTGACGCCGGCGACGTTATTTTCTTTAAACGACACCGTTACGATCTTCATAGGCTTTTTATTGGTTGGCGTAGACGCGGCGGTGAAGCTAATTCTTCTTCCACGTTAACCACGTCAACGTCAACGTCATCTTCTACTGCTCTTCTTAATAATAATAATAACAATACGACGGCGTTTTGGAACGGTGTAATGCCTTATCGTCAAACACACGTGTCAACTGCTTACTCTAATCATCTGATTCATCCAGAGTATTCTCATTACGGTGGTGCTGTGGAAGCTCAGTCAACACCGACGGGTACGATGAGTTCAAGGACGGTGAGACTATTTGGTGTTAATTTAGAATGTGAGCAACTAAACGACGGTGACGTCACCGTCTCCGCCGTGGAGCCACCGTATTCTGACGCCGACGGTTATCAGGGGCAACATAGTAATTATTATTACTCAACTCCTCATCGC
Protein Sequence:
  • >AA52G00027|Aethionema_arabicum|B3|AA52G00027
    MSVNHYTQELHNNLFSNNQNDAVYNNHNQYDAVQSQNQYDAVRVSLFEKSLTPRPALMLSFEDETTGKNWEFRYSYWNSSQSYVLTKGWSRYVKHKRLDAGDVIFFKRHRYDLHRLFIGWRRRGGEANSSSTLTTSTSTSSSTALLNNNNNNTTAFWNGVMPYRQTHVSTAYSNHLIHPEYSHYGGAVEAQSTPTGTMSSRTVRLFGVNLECEQLNDGDVTVSAVEPPYSDADGYQGQHSNYYYSTPHR