Information report for 913118
Gene Details
Functional Annotation
- Refseq: XP_020872668.1 — protein TPR3
- Refseq: XP_020872670.1 — protein TPR3
- Refseq: XP_020872671.1 — protein TPR3
- Refseq: XP_020872672.1 — protein TPR3
- TrEMBL: D7M9A5 — D7M9A5_ARALL; Uncharacterized protein
- STRING: scaffold_700860.1 — (Arabidopsis lyrata)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT4G31610.1
- Brassica napus: GSBRNA2T00047942001, GSBRNA2T00022789001, GSBRNA2T00130472001, GSBRNA2T00030133001, GSBRNA2T00130468001
- Brassica oleracea: XP_013620588.1, XP_013622020.1, XP_013622019.1, XP_013620560.1, XP_013620573.1, XP_013620551.1
- Brassica rapa: XP_009108916.1, XP_009108915.1
- Raphanus raphanistrum: RrC17018_p1
Sequences
CDS Sequence:
- >913118|Arabidopsis_lyrata|B3|913118
ATGGACGAAGCAGGTAGGATGAGGAGGCATGATGAAACCATGACACTCATAAAGAATTACCTTGAGCAACACGGAATGTCCAGCACGGTTCAAGCGAACAACACAATACCTACTGTTGATGTAGAGAATCAAAGGGAAAGAGTGGTTCAGTATGTGAAGAGCCTAATCGAACAAGACCTAAATGTTAGGTCCATGTTCTATCCAACAGTCATTGAGGGACAAAGTAGACTACAAACCCTCTTAGAACAGAGCGTGAACTGGCAACATAGAGATTGCGTTCATAGCCCCTTGTTTGCTTCTTTGCTCAATGATCACCACTGTACTCCCCAACCCCTTCATCAGAATCATCAAACTCTAGCCACCAACAATTTGGATATGCAGGCATCATCATCAGGATTAGGAAACTATGACCCGATGTTACTTGAGTTCAATGGCCAACCCCAACACTCAGCTGGTTCCCATTACTCACCGTCATTATATTTGACTATTGAAGATGATACAGTCATGCCTGGATGGACTATTAACTCAGATCAGTCAGCGGGTTTTTCAAACGACATTCCATCTGTTGTTACTGTTCCGCCGACCTTTTCTCTGTCCGATAGCGTTGTGAAAGATATTCATGTGACTGAGGTTGTCACTGCTTTTGAGTTTCACCATCATCTCCCTTTGGTACTTGCTGTGGGTTTCTCTGAAGGTTTAGTTCACACTTACAACTATATACATGAACAGCGCCCTAAGCCACACCTTGAGATTGAGGCACATAGTGGGCCTGTCAATGATATCGTGTTCTATAGTTCTCAAGGAGAGCTAAAGATAGTAACCTGTGGAAATGACAGACACATTAAGGCTTGGAATTCATCAAATGGGTTAGTGTACTGGAAATTGACTCATACAGCTCCCTTAAATTCTCTTGCTTTGCACCAAGATGGAAACAAAGTGCAACTCTTTATCTTGGATGTGTTTGGAACTGCTATGAAACCAAACATAGGATATAACGGACCACTTGATAGTAATCCACTTCTTTTCCCTAGTGATATGAATGCTAGGCTTGAACTCAAGTTTAGCGGCGATGGAAAGAGATTGTTCTGTTATGGTCCGGGTGGCTTGGTTGAGGTTGATAGAGAATCTTTTGAGACTAGGAGAAATTACAACAGCGTTATGAATCCTCAAACAAAATGCATGGATATTTGCAAGAATGGGTATATAGCTGTTGGCGATGAATATTGTGTGAAAGTCTGGAATGTGGACAGTGATCATCTTTTCAGAAAGATCAAGATAGACGCAGCAGTATTTCCGGAATGTCCCATGGTTAAGTTTAACAGGGAAGGCTCTTTGTTAGCCGTGGTGAGCTCATTATGGAGAAGATGGACAATTAAACTTGCAAAAAACATCTCAAGTGCTGTATTTTACATCAGACTAGGCTGGGAAAACGTCTGCTCCGTTAATGGGCTAAGTGAAGGAGAGTTATGTAAGTTTAAACTTTTCCAAAATGGGGAAAGACCTGTGCTTTGGCTGTGTCCAGGGGAACCTGGCATTGGCCACAAACAGAAGAGGACGTTGGATGAAGTTTCCAAGGGAAAGGAGAAGAATACACCTAGCCGTGAAAGTACCGGGCAACTATCACTTCCAATGAGTTTCACGAGGAAGAATAACATTAATAAGGCTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGATAACAGGACTTGGACGAGCCGGAAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTGAAGGGAAAAGGAAACCAAAGCACTCGTAAGAAGAGAGCTTGTGAGACTGCTCCTCAGCCAAAGAATGTGAAAAAGGCTCCAAGAGTAGGAGTAGAGGGACGGCTGAATAAGAGAATAAGTTGCTGA
Protein Sequence:
- >913118|Arabidopsis_lyrata|B3|913118
MDEAGRMRRHDETMTLIKNYLEQHGMSSTVQANNTIPTVDVENQRERVVQYVKSLIEQDLNVRSMFYPTVIEGQSRLQTLLEQSVNWQHRDCVHSPLFASLLNDHHCTPQPLHQNHQTLATNNLDMQASSSGLGNYDPMLLEFNGQPQHSAGSHYSPSLYLTIEDDTVMPGWTINSDQSAGFSNDIPSVVTVPPTFSLSDSVVKDIHVTEVVTAFEFHHHLPLVLAVGFSEGLVHTYNYIHEQRPKPHLEIEAHSGPVNDIVFYSSQGELKIVTCGNDRHIKAWNSSNGLVYWKLTHTAPLNSLALHQDGNKVQLFILDVFGTAMKPNIGYNGPLDSNPLLFPSDMNARLELKFSGDGKRLFCYGPGGLVEVDRESFETRRNYNSVMNPQTKCMDICKNGYIAVGDEYCVKVWNVDSDHLFRKIKIDAAVFPECPMVKFNREGSLLAVVSSLWRRWTIKLAKNISSAVFYIRLGWENVCSVNGLSEGELCKFKLFQNGERPVLWLCPGEPGIGHKQKRTLDEVSKGKEKNTPSRESTGQLSLPMSFTRKNNINKAGEVILLNQDGRKWSSYLQITGLGRAGSEWFYLRRGWREMCEANGVKGKGNQSTRKKRACETAPQPKNVKKAPRVGVEGRLNKRISC*