Information report for 890070
Gene Details
Functional Annotation
- Refseq: XP_002893387.1 — B3 domain-containing protein REM17 isoform X1
- Swissprot: Q84WP3 — REM17_ARATH; B3 domain-containing protein REM17
- TrEMBL: D7KQM9 — D7KQM9_ARALL; T24P13.6
- STRING: scaffold_102864.1 — (Arabidopsis lyrata)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0009507 — Cellular Component — chloroplast
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT1G26680.1
- Brassica napus: GSBRNA2T00090623001, GSBRNA2T00142485001, GSBRNA2T00142487001
- Brassica oleracea: XP_013639399.1, XP_013638637.1, XP_013638638.1
- Brassica rapa: XP_009115395.1, XP_009115393.1, XP_009115392.1, XP_009115394.1, XP_009115396.1, XP_009115639.1
- Raphanus raphanistrum: RrC1584_p4, RrC7421_p2
Sequences
CDS Sequence:
- >890070|Arabidopsis_lyrata|B3|890070
ATGGCGGATCAATCTCTTCTACACTCTCCGATCAAACCACATTTCTTCAAGCCTCTTCTTCAAGGCTTTCGCACTCACCTCAACATTCCTGTTGCTTTCTTCTCGAAGCATGTTGAAGGAAAAAACGATCAAAACAAGATTGCGAAACTGAGATCAGACGCGTCAGAGAAAACTTGGTTAGTGAAGATGGACGGTTTGAATTTAACCGACGGGTGGGAAGATTTTGCCTTTGCACATGATCTCCGAATTGGTGACATTGTCATTTTCAGACATGAAGGAGAAATGGTGTTTCATGTCACAGCTTTAGGACCAAGTTGTTGTGAGATTCAATATTATACATCATCTCACAACAGCAATGATGATGATCGTAATGATCAGACCAATATTGCTTCAAGAAACAGTGAAAGAGTGAAGAAGAATCCCAGAAAGAAAGTAGAGTCTTCTTTAGACCATTCTCGTTTTGTGGCAAAAGTCTCAGCTTGGGGCCTAAGAAATGATCGACTGTATATACCACTAAGTTTCGCGAGGTCAAACGGTCTGAACAAAATCAACAGTAAGAAAATCTATCTTTACAACGAAGCAGGAAGATCATGGAAGTTAGATTTGAAACACGACAAATCAGGCATGCATACTTATATCCAATCCGGTTGGAGAAGTTTCTGCGCTGCAAATGGGATTAGGCAAGGCCAATATACATTCAAACTTGTCCGAAAATCGGCACCATCTCTCATCCGTTTGTGCCGCGAAAAAGCTAAACCAAAACAAAGATCAGTTGCAGAATCTTCATCAGACCAATCTTGTTTTGAGGGATCTGTCAGTCCTTCAAGCCTAAGAAATAATCAACTGTTTCTTCCAAGGAGCTTCGTGAGCTCAAATAGTCTGGAGAAAAGATGCAGTGAGATAGTTTTAAAGAATGAACAGGGAATAAAATGGCCTTCAGTTTTGAAACATTACAAAACAGTCACTTATCTTACAAAAGGCTGGACTAGTTTCTGTCAAGTAAACAGGATCAAAGCTGGAGATTCCTACAAGTTTAAACTGGTTGGAACCTGGACGAAACCTGTTCTTTCTTTGTGTCCTACAAATTCTAATCATGACAAAACTCCATTAGAGTGTCCCAATGATGTCAAGACCCTCTCATCAAATCCTAGAAGCGGAGATGACAGTAGCAAATCTAAAGAAATTGAAGAGGAGAATATTGAAGACAAGAATATCTCAAAGACATGCTTGGAGATAAAGAAAAGGAAGTATTGGTCAAGATGCAGAGCTTCTGTAGAAAACATGGATGATGATCAGACCAACATCGGAAACAGTTCAAGAAAGAACGTAGAGTCTTCATCATACCATTCTAGTTTTGAGGGATCAGTCAATCCTTCAAGCCTATACAAAGATCAACTGTATCTTCCAAGGAACTTTGTGAGCTCAAATGGTTTGGACAAAAGATGCAGTGAGATAGTTTTAAAGAATGAAAGGGGAGAAAAAAGGACTTTAGTTTTGAAACACTTCAAACAAAACCTTACTTTTCTCAAAAAAGGCTGGACCAGTTTCTGTCAAGTTAACAGGATCAAAGCTGGAGATTCCTTCAAGTTTAAACTGGTTGGAACCTGGAATAAACCTGTTCTTACTTTGTGCCCTACAGTATCCAACCATCACAAAACCCCATTAGAGTGTTCAGAAGGTAACAAATCCGAAGAAAATGAAGAGGAGGATATTAAAGACAAGAATACCTCTCAGGATTGCTTGGAGGTAAAGAAAAGGAAGTATTGGTCAAAATGCAGAGCCTCTGCAGAGAACATGGATGATGATCAAACCAACATTGGAAGCAGTTCAAGAAAGAAGAGAGTGAAGAAAAATCCAATAAAGAAAGCAGACTCTTCATCAGACCATTCTAGTTTTGTGGCTAATGTCACAGCTTCAAGCCTAAACTGTGATAGACTGTATTTACCACTAGGTTTCGCGAGGTCAAACGGTCTAGACAAAATGAGCGGTAAGAAGGTTGTTCTTCTTAACGAAGAAGGACGAACATGGAAGTTAAATTTGAAATACAACAAAGCAGGCAACCAGACTTATGTCAGACCTGGTTGGAAAAGATTCTGTGATGCAAATGGGATGAGTCAAGATCAACAATTTACATTCAAACTGGTCCAAAAACATGGACCACCTGTCATGCGTTTGTACCTTGCAGAACATAGACCAAAATCAGAATCTTCATCGCACGGTTCCTATTTGGTGGGATCTGTCACTGCTTCAAGCATAAACAAAGATAAGCTGTATTTAAGGAAGAGTTTTGTGAGCTCAAATGGTCTGGACAAAGGATGCAAGAAGATAGTTTTAAAGAACGAATGGGGAAGAGAATGGAATTTAGTCTTCAGACACTACAAATCACACTGCTTTACTATTATCAAACGAGGCTGGGCCAGTTTCTGCCAAGGCAACGGATTAAAAGCTGGAGATTCCTTCAAGTTTAAACTGGTTGGAACAGGGGAAAAGCCTGTTCTTTCTTTGTGCCCTGCAGAATCCAGTTGTGAGTGTCCAGATGGTAGTGATGATGTAAAGTCCCTCTCCTCAAATTCTAGCAGCGGAGATGACAGTAGCAGATCCGAAGAAGTTGAAGAGGAGAGTATGGAAGACAAGAACATCTCACAGGATTGCTTGGAGATCAAGAAAAGGAAGTATTGCTGTTCATCTTCATATAGTCAAAACCGATTTGTGACATTAACTCTTACACTGTCCGCTTTTCAAACCTACAAACTGTATCTTCCGCGCGGTTTCACGCAGGTGAATGGCATCAACAAGCCAAGGAAGATAACTCTGCTGGGTCAAGATGGAGTAAAACGGGTGGTGGATCTCTATCAGGATAAAATAAGCGGAACAATGAGATTTGGCAAAGGCTGGAGAGAGTCCTGTGAAGCTCAAGGCGTGAAGATAGACGAGTCCTTTGTGTTGGAACTCATTTGGGAGAAAGAAGCAAGTCCGGTACTTAAGTTCTGCACCAAATTAAACTCTGCTTGA
Protein Sequence:
- >890070|Arabidopsis_lyrata|B3|890070
MADQSLLHSPIKPHFFKPLLQGFRTHLNIPVAFFSKHVEGKNDQNKIAKLRSDASEKTWLVKMDGLNLTDGWEDFAFAHDLRIGDIVIFRHEGEMVFHVTALGPSCCEIQYYTSSHNSNDDDRNDQTNIASRNSERVKKNPRKKVESSLDHSRFVAKVSAWGLRNDRLYIPLSFARSNGLNKINSKKIYLYNEAGRSWKLDLKHDKSGMHTYIQSGWRSFCAANGIRQGQYTFKLVRKSAPSLIRLCREKAKPKQRSVAESSSDQSCFEGSVSPSSLRNNQLFLPRSFVSSNSLEKRCSEIVLKNEQGIKWPSVLKHYKTVTYLTKGWTSFCQVNRIKAGDSYKFKLVGTWTKPVLSLCPTNSNHDKTPLECPNDVKTLSSNPRSGDDSSKSKEIEEENIEDKNISKTCLEIKKRKYWSRCRASVENMDDDQTNIGNSSRKNVESSSYHSSFEGSVNPSSLYKDQLYLPRNFVSSNGLDKRCSEIVLKNERGEKRTLVLKHFKQNLTFLKKGWTSFCQVNRIKAGDSFKFKLVGTWNKPVLTLCPTVSNHHKTPLECSEGNKSEENEEEDIKDKNTSQDCLEVKKRKYWSKCRASAENMDDDQTNIGSSSRKKRVKKNPIKKADSSSDHSSFVANVTASSLNCDRLYLPLGFARSNGLDKMSGKKVVLLNEEGRTWKLNLKYNKAGNQTYVRPGWKRFCDANGMSQDQQFTFKLVQKHGPPVMRLYLAEHRPKSESSSHGSYLVGSVTASSINKDKLYLRKSFVSSNGLDKGCKKIVLKNEWGREWNLVFRHYKSHCFTIIKRGWASFCQGNGLKAGDSFKFKLVGTGEKPVLSLCPAESSCECPDGSDDVKSLSSNSSSGDDSSRSEEVEEESMEDKNISQDCLEIKKRKYCCSSSYSQNRFVTLTLTLSAFQTYKLYLPRGFTQVNGINKPRKITLLGQDGVKRVVDLYQDKISGTMRFGKGWRESCEAQGVKIDESFVLELIWEKEASPVLKFCTKLNSA*