Information report for 868325
Gene Details
Functional Annotation
- Refseq: XP_020885758.1 — B3 domain-containing protein REM12 isoform X2
- Swissprot: P0CAP4 — REM12_ARATH; B3 domain-containing protein REM12
- TrEMBL: D7LIB4 — D7LIB4_ARALL; Predicted protein
- STRING: Al_scaffold_0004_488 — (Arabidopsis lyrata)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT2G24680.1, AT2G24680.2, AT2G24650.1
- Brassica napus: GSBRNA2T00015923001, GSBRNA2T00138754001, GSBRNA2T00057300001
- Brassica oleracea: XP_013628510.1, XP_013624031.1, XP_013604125.1, XP_013604126.1
- Brassica rapa: XP_009133977.1, XP_009133979.1, XP_009117105.1, XP_009117116.1
Sequences
CDS Sequence:
- >868325|Arabidopsis_lyrata|B3|868325
ATGGAGGCAAGTCTTCTACGGAGAAACACAGGAGGAATGTGTCTCGGAAAGGGCTGGAAAGAGTTTGCTATGTCCAACGGCTTGAAGAGTGGTGAATCGTTCACGTTGGAGGCAATTTTGGAGAACGGAACTCCTATGCTCGGTTTGTTCAGTACACAGTCCAGAAGTGATAGAAGCCAGCAAGGAGAGTACTCAAAACATAGCGAGAAAGAGTCGATTTTTGTTGAACATAGCAGTGGAAAAGAGACCAGGAAAGCCATAATCAACAGAGACGTGAGGAGAGACTCGTATCCAGCAAGCCGGAACCCATTCGTGACATTAAGACTTACATATGACAACCTCAGAAATAGTAGACGGGTGAGTTCATCAATCAACCCCTTGATTCAGAGGAATCTTCCATTGTCGTTCACAAGAGAAAATGGCTTGGACGAACCTGGGATAATAACTCTGGTTGGCAATGATGGTACAAAGTTGGAGGCAAATCTTCTACGGGAAAACACAGGAATAATGTGTCTCGGAAAGGGCTGGAAAGAGTTCGCTATGTCTAACGGCTTGAGGAGTGGCGAATTGTTCACGCTGGAGGCAATTTTGGAGAATGGAATTCCTATGCTCAGTTTGGTCAGTACACAGTCCACAAGATATAGAAGCCAGGAAGGAGAGTGCGCAAAAGATAGCGAGAAAGAGTCGATTTCTACAGTACCTAGCAAAGGAAACAAGAAGAGGAAAGCCACGAGCAAGAGAGAGGAGAAGAGAGACTCGTCTTCAGCAAGCCAAAATCGATTTGTGACATTCACACCTGAAGATATCAGAGACTGTATACTATATCTTCCACAAGATTTAACAGCTTTAATTGGTCTTGAAAGGAAATGCCGTGAGATTGTTGTAACAGATGAAAGGGAAAGATCATGGGCATTGGAGCTGAAGTTCAACAAATCATCTGATACTTTCTACATAAGCCGAGGTTGGAGAAGTTTCTGTGATGAAAACGATAAGAAAGCTGGCGGCGTCTTTGTTTTCAGATTAGTTGGAAACAGGGAAACTCCAGTGCTCAGTTTCTGTTCCACTGAATCTATCAAGAACAACAAAGAAAACTGTATGGAGCTGGAGAGAAAGAAGAAGCATCTGAAATGTATAGATTCAACTTCACCAAGCCAAAACCGGTTTGTAACATTATCACTTTCACATGACAACCTCAGAACAGGTACACGGCATCTTCCACTGTCATTTGCAAGAGATAATGGCTTGGACAAACCTGGGATAATAACTCTGGTTGACAAAGATGGTACAAAAAGGAAGGCAAATCTTCGACGGGAAAAAACAGGAAAGATGTTTCTCGGAAAGGGATGGAAAGATTTCGTTATAGCAAACGGCTTAAAGAGCAGCAAATCTTTCACATTGGAGGCAGTTTTGGAGAACGGAACTCATATGCTCAGTTTGGTCAGTATACAGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGCTCAAAAGATAGCAAGAAAGAGTTAATTTCTGCAGTACCTAGCAGAGGAAACAAAACCAGGAAAGCCATGAACAACAGAGACGTGAGGAGAGATTCATTTCCAGCAAGCCAAAACCAGTTTGTGACATTATCACTTTCACATGACAGCCTCAGAAAAGGTAGACAGTATCTTCCATTGTCATTCACAAGAGAAAATGGCTTGGACGAACCTGGGATAATAACTCTGGTTAGCAAAGATGGTACAAAGTTGGAGGCAAGTCTTCTACGGGAAAACAAAGGAATAATGTGTCTCGGAAAGGGCTGGAAAGAGTTCGCCATAGAAAACGGCTTAAAAACCGGCGAATTGTTCACGTTGGAGGCAATTTTGGAGAAGGGAACTCCTATGCTCAGTTTGCTCAGTACAGAGTCCACAAGTGATAGAAGCCAGCAAGGAGAGTGTTCTAAAGATAGCGAGAAAGAGTCGATTTCTGCAGAACCTAGCAAAGAAAACAAGAAGAAGAAAGCCACTAGCAACAGAGAGGAGAGGAGAGACTCTTCTTCAGCAATCCAAAATCGATATGTGACATTAACACTCACACCAGAAGATGTCAGCGCCTGTAAACTAATTCTTCCAAGTCAATTCATGAAAGCTAATGGCATTAACAAGCTCGGGAAGATAACTTTGGTGGGTCAAAACAGAACGAAGTGGTTTGCATATCTACTGTCAAAAAATGGAATTGTGGCTCTGGGATCTGGTTGGAAGGGTTTCTGTGAAGCTAATGGCGTTAAGACAGGGGAGTCATTCACTTTGGAATATATTGATGAACAAGACACAACTCCTGTGTTTAAGTTCTGGTCCAACTCCGTAGAGTAA
Protein Sequence:
- >868325|Arabidopsis_lyrata|B3|868325
MEASLLRRNTGGMCLGKGWKEFAMSNGLKSGESFTLEAILENGTPMLGLFSTQSRSDRSQQGEYSKHSEKESIFVEHSSGKETRKAIINRDVRRDSYPASRNPFVTLRLTYDNLRNSRRVSSSINPLIQRNLPLSFTRENGLDEPGIITLVGNDGTKLEANLLRENTGIMCLGKGWKEFAMSNGLRSGELFTLEAILENGIPMLSLVSTQSTRYRSQEGECAKDSEKESISTVPSKGNKKRKATSKREEKRDSSSASQNRFVTFTPEDIRDCILYLPQDLTALIGLERKCREIVVTDERERSWALELKFNKSSDTFYISRGWRSFCDENDKKAGGVFVFRLVGNRETPVLSFCSTESIKNNKENCMELERKKKHLKCIDSTSPSQNRFVTLSLSHDNLRTGTRHLPLSFARDNGLDKPGIITLVDKDGTKRKANLRREKTGKMFLGKGWKDFVIANGLKSSKSFTLEAVLENGTHMLSLVSIQSTSDRSQQGECSKDSKKELISAVPSRGNKTRKAMNNRDVRRDSFPASQNQFVTLSLSHDSLRKGRQYLPLSFTRENGLDEPGIITLVSKDGTKLEASLLRENKGIMCLGKGWKEFAIENGLKTGELFTLEAILEKGTPMLSLLSTESTSDRSQQGECSKDSEKESISAEPSKENKKKKATSNREERRDSSSAIQNRYVTLTLTPEDVSACKLILPSQFMKANGINKLGKITLVGQNRTKWFAYLLSKNGIVALGSGWKGFCEANGVKTGESFTLEYIDEQDTTPVFKFWSNSVE*