Information report for 676783392
Gene Details
Functional Annotation
- Refseq: XP_013639365.1 — PREDICTED: uncharacterized protein LOC106344550
- TrEMBL: Q9ZVW0 — Q9ZVW0_ARATH; Putative retroelement pol polyprotein
- GO:0015074 — Biological Process — DNA integration
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >676783392|Sisymbrium_irio|B3|676783392
ATGGCGAAGCTGAGATCAGACGCGTCGAAGATAGCATGGGAAGTAGAGATAGAAGATGGCCATAAACTCAGTGGAGGTTGGAAACAGTTCGCTCTTGCACACGATCTTCGAATCGGTGACATTCTCATTTTCAGACAAGAGAAAGACATGGATTTCCACGTGACACTCTTGGGACCCAGTTGCTGTGAGATTCAATATGAGTCATATTTAGAAAACGAGAACAACCTCGAGAATATTCAGAGAATGAAGAATCCAAAAGGAGAAGCAGAGTTTTCTTCACTAGATCCTTCTTGTTATGTAGCTAATGTGACGCCTTCAGGCCTCCGAGATGATAGACTGAATCTTTCAAGGAGTTTTGTGAGGGAAAGTGATCTACACGAAGTATGTGGAGAGATTATTCTGATGAATGAAAAGGGTGCATCATGGACGCTAAATTTGAAAAGAAAGAGATCATGTGGAACTATGTCTATCGCAGGAGGGTGGAGAAGTTTTTGTAGGTCCAATGGGCTTAGAGCTGGAAGTTTATTCACTTTCAAACTGATCAAAAGAGAAGGAACTCTGGTTCTACGTGTGTCTTCACAATTCCAAGACCGATTTCTGACACTAACTCTTAAACCTTTCAATCTCAAAAACTATATACTGTATCTTCCCTTACGCTTTACCCGGAGGCATGGCATCAATGAAGAAACTAAAATGACTTTGATGAACAAAAACGGTGCCCGGTGGTCTACGGATCTTCGGTCTGAGAAAACAAGAGATAGAGTGAGGTTGGTAGGAGGTTGGCAACAGTTCTTCGAAGCTAACGGTGTGAAGACAGGTGAATCAATCATTGTGAAGCTGATATGGGAAGGAGACAAAAGTTGTGTCCTTAAGTTCTGCACTAAGCGTCTTTCAATGGATAACATGAGCATGCCAAGAGTTGTAATCCGATCACTGATATATTTTTTGGAAAAAGATGGTAGAAAACGGAAGGAAAGAGACGGAAGAATGAATTTCGGAAATGGCTGGATAGTTTTTGCTGAAGCAAACGACACTAAACCGAGCGAATCCGTTACATTGGAGTTAATTAATTTTGGAAGCCAAAATTCCTATGATAAGTGGTCCTCTGAGCTGGAGAATGCCTTGCGTGCCAAGCGAAAGATAGGTTTCATCAATGGGAGTTTAAAGCTTCCGAATGAGAAAGAGAAGCCAGTTGAAGCTGAGATGTGGAGGACGGCGAACTCTATGATTGTTGGGTGGATCAGAAGTTCGATCTCTCCGGTGTTGCGATCGACAATACCTTTCAACCCTGACGCCTACAAGATGTGGACGGAGTTGAAGAAGCGTTTCTCAGTGGGAAGCGCAGTTCGAGTGCATCAACTCAAGGCTGAGTTAGCTTCGTGTAGACAGGAAGGATCTACCGTGATGGAGTATTTTGGGAAGTTGTCTCAAAAGTGGGAGGAGCTGTTGAGTTGTAAGCCGATCCCGACGTGTACGTGTGCTGCGTCTGAAGTGTATGCCAGAGAATATGAGGAGGAGAAAGTCCACCAATTTCTCATGGGACTAGACGAAGTGAGATTCGGGAATGTTTGTACTAACATTATTGGATTGGAGGTGTTACCGGACCTAAATTCGGTCTACCAAAGAGTTGTTAGAGAAGAAAAGAGACTCGGTGGATCGCGTCTTGAACCTAAAGAAGCTCCAGTTGGTTTCACGTCAAAAGGTGTGCCAAGTGGAGATGAACCAACGATGGGAGGACTCATGGCAGCGGTCGCACGAGGACGAAGCTCGGTTGTTTGCGGTAATTGTGGTCGAACTGGACACGAGAAGAAAGAGTGTTGGCAAATCATTGGTTTTCCAGAGTGGTTCACGGAGAGGAATCAGGCGAATGGAAGAGGTGGCAGAGGAGGTAGAGGCCGAGGAAGATCAAACTCCTCAAGGGCCAATGCTGTACAAACACCAGGTGCTACATCGTCTGGTACTCAAGGAGGAACTGTTCCGCAGCTGAGTGCTGAGCAATGGGCATCTCTAACAGCGTACATCGAGCAACAGAAGCCATCTCCGATTCCAGACAAGTTGAATGTGAAGAGAGGTCACAGAGTCAAAGCTTCGGAGGATCCGACTGTGTGGCATCGACGTCTAGGACATCCTGCTTTTGGTGTTTTGAGTTTTTTACCATTTGTTGCTGGTTTTAAAGATATTTCAAATAAGTTTGGAGGATGTGATATCTGTTTTCAGTCCAAACAAACAAGAGAAGTGTTTTCAGAAAGTCTTAATAAAAGTTCTTCTTCTTTCGATTTAATACATGTCGACCTTTGGGGTCCTTATCGCAAACCATCGTCATGTGGAGCAGTGTATCTTTTAACCATAGTGGATGACTTTACCAGAGCAGTTTGGATTCATTTACTACTTGAGAAGAGTGAAGTAAAAACAGTTCTGCCGAATTTTATATCACTTGCTGCTCGTCAGTTTGGGAAGCAGGTTAAGACTGTGAGAAGTGATAACGGAACTGAGTTCATGTGTCTATCGGAGTATTTTGCGGCAGCTGGTATTGTGCACCAGACATCTTGTGTAGGTACACCTCAACAAAATGGTCGAGTGGAGAGAAAGCATCGACATATTCTGAATGTTGCGAGGTCCATTCTATTTCACGCTAATCTTCCAGTAAGCTTTTGGGGAGAAAGTGTGTTAACGGCAGCTCATCTCATTAACAGGACGCCGACTAAGTTGCTACAGGGTAAGACACCATATGAATGCCTGTTTGGGAAGCCTCCGAGTTATGACGACATTAAGACATTTGGATGTTTGTGTTATGCTCACAAAGCAAGGAGGGATAATGACAAGTTTGGCGTGAGGAGTACACGATGTGTGTTTGTTGGATATCCGTACAGTAAAAAAGGTTGGAAACTTTATGATCTAGACACGGAAAAATTCTTTGTGTCAAGGGATGTAGTTTTTGATGAGGAAATATTTCCTTATGCTGAGAAGAAGATGGTTGAGACTCCTATTATCCCTCCCCCGTGTGTTGCATATTATGACGAAGAAGAGCTGCCTGCGATTGTTGTGGAAAACGGGAGCAGTGAACAGGAAGCCTCGGCTGAGATACCAGTAGGAGTAAGCGAGGAAGTTGGACAGAAACAAACTTCTCCAAATGAGACAGAAGTACAGTTGGGGCGTGGTCATCGACAGCAAATTCCCTCGGTGAGACTGCGAGACTATGTTACGTATAATGCTCAAGTGTGTCCTGATAAACATAACACCATCGCCGTTCTACAGTCAGAGACCTCTACGAACGTGTCAGGTAAGAGTCATAGTTTGTATCCTATCACAGATTCTGTTTGTGATGATTTCTTCTCAGATCATCATCAAGCTTTCTTGGCTGCGGTGAGTGCTGGTGTGATACCGCGCAACTACAAAGAGGCCTTTGCAGATGAAAGGTGGAACAAGGCGGTGAAAGGAGAAGTAACTGCGCTTGAACTAAATAGAACGTGGGACTTGGCGGATTTACCTCCAGGGAAGAAGGCTATAGGAATCAAGTGGGTGTTCACCATTAAATACAATGCTGATGGATCGATAGAGCGGTACAAGGCTAGACTTGTGTGCTGTGGTAATCATCATGTGGAAGGAGAAGATTATGAGGAGACTTTTGCACCAGTAGCGAAGATGGATACAGTGAGGACACTGCTGGAGGTAGCTGCAGCAAAGAACTGGGAGGTGCACCAAATGGATGTGCATAACGCATTTCTTCAAGGAGATTTGGAGGAAGAGGTATACATGAGACTACCACCAGGTTTTCACTCAGATGATCCTAACAAAGTGTGTAAACTGCGGAAGTCCTTATATGGCCTGAAGCAGGCGCCCAGGTGTTGGTTTGAAAAGTTGTCAGACGCACTCAAGAAGCTTGGTTTTAAGCAGTCATATGAAGATTACTCTCTGTTTTTCTTTGTTAAGGGGGAGAAGTGCATACGAGTGCTTATATACGTAGACGACATGATTATTGCAGGAAATGATCTCACATTGATAGAAAAGTTTAAGAAGCGTTTGAGTGAGACATTTCATATGAAGGATCTTGGAAAGGCCAAATATTTTCTGGGTATAGAAATTGCGAGAGGACCATTGGGGATGTATCTGTCTCAGAGGAAGTATGCATTAGACATAATTAATGAGGCTGGATTGCTCGGTAGTAAACCTGCAACAACGCCTATGGAGGTGAATCATCATCTCTTGCGAAACGATATCCCTTTGATGAAGGATCCGGTGAAGTTTCGTCGCGTGGTTGGACGCCTAGTATACTTGACTGTGACACGACCAGAACACGACGATCGCTCTCAGCTTATATGGTTATGTTGGGGAACTCACCGGTGGCTTGGAAGACAAAGAAGCAGGATACGGTTGTTGGCCGATCTTGGTGTTCGACATGAAGCTCCAATGGATCTGTTCTGTGACAGCAAGTCAGCGATCTACATTGCAGCCAATCCAGTATTTCACGAGCGCACAAAACATGTGGAGAAGGATTGTCATAGTGTTAGAGATGCGGTAAAGGCAAAGCTCATAGAGACAAGGCATGTACGGACTACTGAGCAGCTCGCAGATATATTGACCAAGGCGTTGGGGAGCTCATCTTTTCGTTACTTGTTGTCCAAGTTTAGAGTGTGCAATCTACACGCTCCAACTTGA
Protein Sequence:
- >676783392|Sisymbrium_irio|B3|676783392
MAKLRSDASKIAWEVEIEDGHKLSGGWKQFALAHDLRIGDILIFRQEKDMDFHVTLLGPSCCEIQYESYLENENNLENIQRMKNPKGEAEFSSLDPSCYVANVTPSGLRDDRLNLSRSFVRESDLHEVCGEIILMNEKGASWTLNLKRKRSCGTMSIAGGWRSFCRSNGLRAGSLFTFKLIKREGTLVLRVSSQFQDRFLTLTLKPFNLKNYILYLPLRFTRRHGINEETKMTLMNKNGARWSTDLRSEKTRDRVRLVGGWQQFFEANGVKTGESIIVKLIWEGDKSCVLKFCTKRLSMDNMSMPRVVIRSLIYFLEKDGRKRKERDGRMNFGNGWIVFAEANDTKPSESVTLELINFGSQNSYDKWSSELENALRAKRKIGFINGSLKLPNEKEKPVEAEMWRTANSMIVGWIRSSISPVLRSTIPFNPDAYKMWTELKKRFSVGSAVRVHQLKAELASCRQEGSTVMEYFGKLSQKWEELLSCKPIPTCTCAASEVYAREYEEEKVHQFLMGLDEVRFGNVCTNIIGLEVLPDLNSVYQRVVREEKRLGGSRLEPKEAPVGFTSKGVPSGDEPTMGGLMAAVARGRSSVVCGNCGRTGHEKKECWQIIGFPEWFTERNQANGRGGRGGRGRGRSNSSRANAVQTPGATSSGTQGGTVPQLSAEQWASLTAYIEQQKPSPIPDKLNVKRGHRVKASEDPTVWHRRLGHPAFGVLSFLPFVAGFKDISNKFGGCDICFQSKQTREVFSESLNKSSSSFDLIHVDLWGPYRKPSSCGAVYLLTIVDDFTRAVWIHLLLEKSEVKTVLPNFISLAARQFGKQVKTVRSDNGTEFMCLSEYFAAAGIVHQTSCVGTPQQNGRVERKHRHILNVARSILFHANLPVSFWGESVLTAAHLINRTPTKLLQGKTPYECLFGKPPSYDDIKTFGCLCYAHKARRDNDKFGVRSTRCVFVGYPYSKKGWKLYDLDTEKFFVSRDVVFDEEIFPYAEKKMVETPIIPPPCVAYYDEEELPAIVVENGSSEQEASAEIPVGVSEEVGQKQTSPNETEVQLGRGHRQQIPSVRLRDYVTYNAQVCPDKHNTIAVLQSETSTNVSGKSHSLYPITDSVCDDFFSDHHQAFLAAVSAGVIPRNYKEAFADERWNKAVKGEVTALELNRTWDLADLPPGKKAIGIKWVFTIKYNADGSIERYKARLVCCGNHHVEGEDYEETFAPVAKMDTVRTLLEVAAAKNWEVHQMDVHNAFLQGDLEEEVYMRLPPGFHSDDPNKVCKLRKSLYGLKQAPRCWFEKLSDALKKLGFKQSYEDYSLFFFVKGEKCIRVLIYVDDMIIAGNDLTLIEKFKKRLSETFHMKDLGKAKYFLGIEIARGPLGMYLSQRKYALDIINEAGLLGSKPATTPMEVNHHLLRNDIPLMKDPVKFRRVVGRLVYLTVTRPEHDDRSQLIWLCWGTHRWLGRQRSRIRLLADLGVRHEAPMDLFCDSKSAIYIAANPVFHERTKHVEKDCHSVRDAVKAKLIETRHVRTTEQLADILTKALGSSSFRYLLSKFRVCNLHAPT