Information report for 676773256
Gene Details
Functional Annotation
- GO:0006511 — Biological Process — ubiquitin-dependent protein catabolic process
- GO:0005783 — Cellular Component — endoplasmic reticulum
- GO:0016020 — Cellular Component — membrane
- GO:0048471 — Cellular Component — perinuclear region of cytoplasm
- GO:0003677 — Molecular Function — DNA binding
- GO:0004842 — Molecular Function — ubiquitin-protein transferase activity
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT3G17000, AT3G17010.1, AT3G17010
- Brassica napus: GSBRNA2T00123900001, GSBRNA2T00137506001, GSBRNA2T00101881001, GSBRNA2T00123899001, GSBRNA2T00137507001
- Brassica oleracea: XP_013585073.1, XP_013626977.1, XP_013626721.1
- Brassica rapa: XP_009146048.1, XP_009135509.1, XP_009135510.1
- Raphanus raphanistrum: RrC1635_p5, RrC18698_p2, RrC1635_p6
Sequences
CDS Sequence:
- >676773256|Sisymbrium_irio|B3|676773256
ATGGCGGATGAGAGGTATAACCGGAAGAATCCGGCGGTGAAGAGGATTTTGCAGGAGGTTAAGGAGATGCAAGCAAATCCTTCTGATGATTTCATGTCTCTTCCCCTTGAGGAAAACATCTTTGAGTGGCAATTCGCCATCCGAGGTCCTGGTGATACTGAGTTTGAGGGTGGCATTTATCATGGGAGGATTCAGCTTCCTTCTGATTACCCTTTCAAACCTCCTTCCTTCATGTTACTGACCCCTAATGGTCGTTTTGAAACCAATACCAAAATTTGCTTGAGCATTTCGAATTACCATCCCGAGCATTGGCAACCTTCATGGAGTGTTCGGACTGCTTTGGTTGCTCTCATTGCTTTCATGCCTACAAGCCCCAATGGAGCACTGGGCTCAGTAGATTATCCAAAAGAAGAGAGACGTACGCTAGCCATTAAATCACGTGATGCACCACCCAAGTATGGCTCTCCTGAACGTCAAAAACTTATCGATGAGATTCATCATTACATCCTCAGCAAAGCAACCGTGGTTCCAAAACCTATTCCTCTGGAATGTAACCAAGCACCTTCCACTGAATCAGTAGCTCGTTCCCAAACTGAGCCACAGGAAGCCATAACGGTAGTGGAAGAGCGGTCTACCGCTACAGCAGACGCCATAGCTGATGATCAGATAATCGAAGAAGCAGCTGAAGCAGTCAATACAACTGCTAATGTGAGTCCCACTGCAGGAGCGTTAGCAACGGTTGAGGTTGCGGCAAAAGCTTCTGGAAGTGGTGAGCAGACGACGGTGAGAAGAGCCGCTCAGAAGCCAGTCGATGACAGACTATTCACGTGGGCAGCTGTTGGGCTCACAATCGCAATCGTGGTTCTTCTCCTAAAGAAGTTCATAAGGTCAAGTGGTTATGAAAAATTGCTGAAGGAGAGACATAAGGAGATGGGTTGGAAAGGTGATTTTCGTCGGATAAAGGAAGAACGGAAGAACATGAGTTTCTTCAAGATTTTCCAGAGTGTCGACCTATCCTCTGAATGCATGAGAGCGCTTCCTTACAACTTCATGAAAAATATCTCGAGCAAAGACTTCTCCTACAAGATGGTGATAAGAGCTCAGTGGGGAAGCTCATGGGAAGTAGACATCTCCAAGAACCCAAGGTTCTACTACATGGAGAAGACCGGATGGAACCAGTTTGTGAGCGACAATGATTTGGGAGAAAACGAGTTTGTTACCTTTACTCACAAAGGACTAATGTGCTTCAATGTCAACATCTACGGGAAGAACGGCAAGGAGATTGTCGTACCGCGAAACCCCCCTACAACGACTCCTTTTAGTGGGATCAAGAAAGAACAAGGTGAGAGCAGTAGCTACAAAGACGTGAAGAAGGAAGAGGAAACAGGTGAGTCTATGGCCGGAGTTGAGCCCGAAACCAGTAATAAGAAAGCTGAGGATTCCAAAACATACAAGAAGAAGAAGAAGAGCAAGAAAGAGGTGAATTCTGTGGAGTTAGGTGAATGTTCGAGAGGATCTAAGCTTAGAGGTAGAAAGAAGAAAGCTGAGAAACCCAAAACAACCAAGAAGAAGAAGATCAAGTGCAGGAAAACGAAGAACGGTATTCCAGAATTCAAAATGACCATAAGGAGATCATACCTCAAGTTCCTGGCAATCCCAAGGGTTTTTGAGGAGGCGTATATCCCGAATGAGTCTTTGATGTACACGATACGTCACTCGAAAGGGAAGGGTTCATGGGAGGTGCTTTGCTTGGTGAGGGAGAGTCGAACAATTTTCTCAAGTGGATGGAGTAGATTGGCACGAGAGTTCCCTTTATCGGTTGGTGACAGGTGTACCTTCAAGCTCATCAAACCCACCGAGTTTGTCCTCATGTCCAAGAAGGGCAGAAAGGAGATCACTGTGATTGACTGA
Protein Sequence:
- >676773256|Sisymbrium_irio|B3|676773256
MADERYNRKNPAVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPSDYPFKPPSFMLLTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKEERRTLAIKSRDAPPKYGSPERQKLIDEIHHYILSKATVVPKPIPLECNQAPSTESVARSQTEPQEAITVVEERSTATADAIADDQIIEEAAEAVNTTANVSPTAGALATVEVAAKASGSGEQTTVRRAAQKPVDDRLFTWAAVGLTIAIVVLLLKKFIRSSGYEKLLKERHKEMGWKGDFRRIKEERKNMSFFKIFQSVDLSSECMRALPYNFMKNISSKDFSYKMVIRAQWGSSWEVDISKNPRFYYMEKTGWNQFVSDNDLGENEFVTFTHKGLMCFNVNIYGKNGKEIVVPRNPPTTTPFSGIKKEQGESSSYKDVKKEEETGESMAGVEPETSNKKAEDSKTYKKKKKSKKEVNSVELGECSRGSKLRGRKKKAEKPKTTKKKKIKCRKTKNGIPEFKMTIRRSYLKFLAIPRVFEEAYIPNESLMYTIRHSKGKGSWEVLCLVRESRTIFSSGWSRLAREFPLSVGDRCTFKLIKPTEFVLMSKKGRKEITVID