Information report for 59628
Gene Details
Functional Annotation
- Refseq: XP_002973331.2 — B3 domain-containing transcription factor NGA1, partial
- Refseq: XP_024537394.1 — B3 domain-containing transcription factor NGA1, partial
- Swissprot: O82799 — NGA1_ARATH; B3 domain-containing transcription factor NGA1
- Swissprot: Q9MAN1 — NGA3_ARATH; B3 domain-containing transcription factor NGA3
- TrEMBL: D8RQU1 — D8RQU1_SELML; Uncharacterized protein (Fragment)
- STRING: EFJ25705 — (Selaginella moellendorffii)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_19191
- Lotus japonicus: Lj2g3v3059650.1, Lj1g3v5061020.1
- Musa acuminata: Ma08_g12160, Ma09_g19640, Ma04_g36680
- Populus trichocarpa: Potri.014G107200.3, Potri.014G107200.2
- Ricinus communis: 30076.m004471
Sequences
CDS Sequence:
- >59628|Selaginella_moellendorffii|B3|59628
ATGAGTTTGTGGGGAGTGATGGGAGCAGGATGGGGAATGGTCGAAGAAGGTTGGAGAAAAGGGCCTTGGACTGCGGAAGAAGACCGTCTTTTGATCGATTATGTGCGTCTTCACGGTGAAGGCCGATGGAACTCTGTGGCGAAGCTCGCAGGGTTGAAGAGAAATGGCAAAAGCTGTAGGTTAAGATGGGTTAATTACTTAAGACCAGACCTCAAGAGAGGACAAATCACTCCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAACAGGTGGTCAACAATTGCTCGTAGTTTACCGGGAAGAACAGACAACGAGATCAAGAACTATTGGAGAACCCATTTCAAGAAGAAGACAAAATTTCCAACTAACAATGCGGAGAAGACGAAAAACAGAATCTTGAAGAGGCAACAATTTCAGCAGCTAAGACAGATGGAGTTGCAGCAAGAACAACAGACGCTTCAATTCAACCAAATCGACATGAAAAAGATCATGTCTTTAATAGAAGATGACAATAATAACGATAATAACTTCAGTAGCAGTAGTAGCGGCAGTAGTGGCGAAGGTGGTGCCTTCTATGTTCCTCATCAGATCCCACATTCAACAACAAGTTCTGGTTATGACCCAAATGGTAATGGGTTTTTCCCGGTGCCAATACCTGAGGCTAATGTCAACGAAGATTACACAGTTTGGGATGGTTTATGGAATCTGGATGTGGAAGGACAAGGAAGCTTTGGTGGAGGTGCTTGTGTCCCAAGGAAGCACTGTTTCCCGAACGTGTCTATTCCCTTCTGTTAG ATGGAGCAAACCAAGAAGCTCAAAACTTCTTCTGAGTTCTCCTTATCTGATGAATCCTCAGCTTCTTCTTCTTCAATCAGGCCTGAGAAAATGGTGGAAGTGAAGAAGGAGCCAGTTTCTTCCCTTAAGAAGGCAGACCGAGAGAGGATCCGTAGAGATAAGCTCAATGAACAGTTTCTTGAGCTCGGAAATGCACTTGATCCCAATAGGCCTAAGAGTGACAAAGCTTCAATTCTCATTGACACAATACAAACCCTGAAAGATTTAATGACTCAAGTTGATAGACTAAAGGCTGAGCATGTCACACTTTCTCAAGAGTCTCGTGAGCTAATTCAAGAGAAGAGCGAGCTAAGAGAGGAGAAAACATCTCTTAAATCCGACATTGATATTCTTAATGCTCAATATCAACATAAAGTCAGAACCATGGTCCCATGGATTCCACATTACACTTATCCTGTCCCTCTAGTTGCAATAACTCAGGGTCCAGTCTCCACTCTGCCTTTTCCACTCTATGCCACTCAAAATCCTGCACCTTTACCTAGCCCATGCTCTACCTTTATGCCATATTCAGCCGAACAAAAAGATGATGCTGGTTTAGAGCTTGAGCTTAAAATCCATGCCTCTTCTTCAGATCAAGAGGATGTTTCTGGTAAAGAGAAGAAAGGAAACTCGGCAATCACTGCAAGCTCATCTAATAGTTACTCATCATCTCAAGCTGTTTCAGATAGTGTATTGTAA ATGGAGCAAACCAAGAAGCTCAAAACTTCTTCTGAGTTCTCCTTATCTGATGAATCCTCAGCTTCTTCTTCTTCAATCAGGCCTGAGAAAATGGTGGAAGTGAAGAAGGAGCCAGTTTCTTCCCTTAAGAAGGCAGACCGAGAGAGGATCCGTAGAGATAAGCTCAATGAACAGTTTCTTGAGCTCGGAAATGCACTTGATCCCAATAGGCCTAAGAGTGACAAAGCTTCAATTCTCATTGACACAATACAAACCCTGAAAGATTTAATGACTCAAGTTGATAGACTAAAGGCTGAGCATGTCACACTTTCTCAAGAGTCTCGTGAGCTAATTCAAGAGAAGAGCGAGCTAAGAGAGGAGAAAACATCTCTTAAATCCGACATTGATATTCTTAATGCTCAATATCAACATAAAGTCAGAACCATGGTCCCATGGATTCCACATTACACTTATCCTGTCCCTCTAGTTGCAATAACTCAGGGTCCAGTCTCCACTCTGCCTTTTCCACTCTATGCCACTCAAAATCCTGCACCTTTACCTAGCCCATGCTCTACCTTTATGCCATATTCAGCCGAACAAAAAGATGATGCTGGTTTAGAGCTTGAGCTTAAAATCCATGCCTCTTCTTCAGATCAAGAGGATGTTTCTGGTAAAGAGAAGAAAGGAAACTCGGCAATCACTGCAAGCTCATCTAATAGTTACTCATCATCTCAAGCTGTTTCAGATAGTGTATTGTAA GCAACCGGAGGAGGGGCAGCAGCTCACGAGCACCTCTTCTACAAAGTTGTCACTCCCAGCGATGTTGGAAAGCTCAACAGGTTGGTCATTCCCAAGCAGCACGCCGAGAGGTGGTTCCCACTGGATCCCTGCCTGCGAAAGAAAGGCCGCCTCCTCTCCTTCCAGGACGTTGTAAGTCGAGAGCTGTGGTGGTTCCGCTACTCTTACTGGAGTAGCAGCCAGAGCTATGTCCTCACCAAGGGATGGATACGTTTCGTCAAGGATAAAGATCTCCAGGCTGGGGACATCATCTCCTTTGAGCGAGGCGCTCGTCACGAACTCTACATCAATTGTCGCAAGAGGCCGACTTCCGGTCGAGCGGCTTTCGCCCCGCTTCCCGGG
Protein Sequence:
- >59628|Selaginella_moellendorffii|B3|59628
ATGGGAAAHEHLFYKVVTPSDVGKLNRLVIPKQHAERWFPLDPCLRKKGRLLSFQDVVSRELWWFRYSYWSSSQSYVLTKGWIRFVKDKDLQAGDIISFERGARHELYINCRKRPTSGRAAFAPLPG