Information report for 487432
Gene Details
Functional Annotation
- Refseq: XP_020876020.1 — B3 domain-containing protein At5g06250 isoform X1
- Swissprot: Q9FNI3 — Y5625_ARATH; B3 domain-containing protein At5g06250
- TrEMBL: D7LZ54 — D7LZ54_ARALL; Uncharacterized protein
- STRING: fgenesh2_kg.6__566__AT5G06250.2 — (Arabidopsis lyrata)
- GO:0010073 — Biological Process — meristem maintenance
- GO:0010358 — Biological Process — leaf shaping
- GO:0045892 — Biological Process — negative regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT5G06250.2, AT5G06250.1
- Brassica napus: GSBRNA2T00086985001
- Brassica oleracea: XP_013609500.1, XP_013628242.1, XP_013628241.1
- Brassica rapa: XP_009122224.1, XP_009130931.1, XP_009130929.1, XP_009130928.1, XP_009130927.1, XP_009130926.1, XP_009130930.1
- Raphanus raphanistrum: RrC17675_p1, RrC1029_p2
Sequences
CDS Sequence:
- >487432|Arabidopsis_lyrata|B3|487432
ATGTCAGTCAACCATTACTCCACAGACCACCACCACACTCTCTTGTGGCAACAGCAACACCGCCACACCACCGACACAACGGAGACAACCACCACCGCCACATGGCTCCACGACGACCTAAAAGAGTCACTCTTCGAGAAGTCTCTCACACCAAGCGACGTCGGCAAACTCAACCGCCTCGTCATACCAAAACAGCACGCAGAGAAATACTTCCCTCTCAATGCCGTCGTAGTCTCCTCTGCTGCTACTGACACGTCATCGTCGGAGAAAGGGATGCTTCTAAGCTTTGAAGACGAGTCAGGCAAGTCATGGAGGTTCAGATACTCTTATTGGAACAGCAGTCAAAGCTATGTCTTGACTAAAGGATGGAGCAGATTTGTCAAAGACAAACAGCTCGATCCAGGCGACGTCGTTTTCTTCCAACGACACCGTTCTGATTCCCGGAGACTCTTCATTGGGTGGCGCAGACGTGGCCAAGGCTCCTCCTCTGCCGCAGCCACTAACTCCGCCGTGAATATGAGTTCTATGGGAGCTCTTTCTTATCATCAAATCCACGCCACTAGTAATTACTCTAATCCTCCCTCTCACTCAGAGTATTCCCACTACGGAGCCGCCGTAGCAACAGCGGCTGAGACTCACTCCACACCATCGTCATCCGTCGTCGGAAGCTCAAGGACAGTGAGGCTTTTCGGTGTGGATTTGGAGTGTCAAATGGATGAAAACGACGGAGATGATTCTGTTACCGCCGCTGCCACCACCGTTGATCTCCCGATGGTTACTACGGCCAAAACATGTACTATTATTACTCTCATCCTCATAATATGGTAA ATGGGGTCAATGATATGCATGAATGAGGTTTGTCGTAAGACGACGTCGTCTGAATGGAGGAAAGGTTGGAGCTTGAAATCCGGTGGATTTGCAAACCTTTGTTACAACTGCGGATCTGCTTTTGAGAACTTAACCTTCTGTGAAACTTTCCACATGGGGGATTCTGGTTGGAGAGAGTGCAAAAAGTGTGGGAAGCATCTACACTGTGGGTGCATTGCTTCAAAATATTTGTTTGAGTACTTAGATTTTGGAGGTGTAGGGTGTATAAGCTGCACAAGGCGTTTTGATGGTCATTCCATGAGACCAATGCAGGTACCTGCTGATGATTTTCGTAATAACACCTTCGGAACTAATTTTATACAGCCACTTCATGTGGAAAAGGGAGTAGATGAAACCAACTTCGAGGAAGGAAGGCTTCCAACAGTGAACAATATAACGGAGATTAGTGAGCCTGGTCAACCCTTTCAAAGTCAAAAGGATGAGAATAATGTGTCTCTTGGGAAAACTAAGCAAGAGAAGCTGCTACCTGTTGGTGATGTTAGCACATGCTTTTCAAATCTCAACCAGCAGTCTATAGCTTCTCTATTTCGTGAACAAGACAATAGCAAACCAAACCAAGGGGTAAAAGAAATGTATGACACGACCAATCAGCCATCGCTAGATTTCTCTTTGAGTACTCCTGTGGGTTGTTCAAGTCCAGGATTATCTTTTCCTGGTGGAGGGGTTGAAGGAAGGGAACATGAAAAGACTCCTCCCTTTCAACAGGGGCTAAGGATGCGCCACATATTGCTCAAGCCCCCCAAACCTAGTCCCAGTTTTGGTTCTGATTCGAACAAAGAACTGCCTTCACAGACTCGGATTGCAAGGCCTCCTGCAGAAGGGCGAGGAGGCCGCAATCAATTACTGCCTAGGTACTGGCCTAGGATTACAGACCAAGAGTTGCGTCAATTATCCGGAGACTTGAAGTCCACCATAGTTCCACTGTTCGAGAAGGTCCTAAGTGCTAGTGATGCTGGTCGAATTGGTCGTCTGGTTCTCCCCAAAGCATGCGCTGAAGCATACTTTCCTCCTATCAACCAATCAGACGGTCTGCCAATAAGGATTCAGGATATAAAAGGTAAAGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTCGGATGTATGTTCTGGAGGGTGTCACCCCTTGCATACAAAACATGCAATTGCAAGCTGGTGATACTGTGGCATTCAGTCGAATTGATCCTGGAGGAAAGCTTGTTATGGGCTTTCGGAAGGCAACAAACAGTGTTGAGACACAGGATCCTCAGTCCTCATACCTCCCCGATGGTAGTGGCTCCGCAGATACTTCATTTACTGGCTTAACTGAAAACCTTAATGTGAGTAGCTAG
Protein Sequence:
- >487432|Arabidopsis_lyrata|B3|487432
MSVNHYSTDHHHTLLWQQQHRHTTDTTETTTTATWLHDDLKESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVVVSSAATDTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQGSSSAAATNSAVNMSSMGALSYHQIHATSNYSNPPSHSEYSHYGAAVATAAETHSTPSSSVVGSSRTVRLFGVDLECQMDENDGDDSVTAAATTVDLPMVTTAKTCTIITLILIIW*