Information report for 481325
Gene Details
Functional Annotation
- Refseq: XP_020885753.1 — B3 domain-containing protein REM13 isoform X1
- Swissprot: P0CAP5 — REM13_ARATH; B3 domain-containing protein REM13
- TrEMBL: D7LIB2 — D7LIB2_ARALL; Transcriptional factor B3 family protein
- STRING: fgenesh2_kg.4__385__AT2G24650.1 — (Arabidopsis lyrata)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Arabidopsis thaliana: AT2G24650.1, AT2G24645.1, AT4G00260.1
- Brassica napus: GSBRNA2T00057300001, GSBRNA2T00012279001, GSBRNA2T00082317001
- Brassica oleracea: XP_013632077.1
- Brassica rapa: XP_009140571.1, XP_009140575.1
Sequences
CDS Sequence:
- >481325|Arabidopsis_lyrata|B3|481325
ATGGCGACATTTTATCCGCAATTCTTCCACACACTTGTTCCTAGCTTCCTCACGCACTTCATGATTCCTGAAGACTTCTTCTTAAAGTATATTGAAGGAACAAGTTTCGCGGAGCTGAAATCGGACGTTTCGGACAGAACCTGGAAAGTGAAGATGTCTGATCGGAGAATCACTGACGGCTGGGAAGATTTTGTGGTGGCTAATGATTTTCGTATCGGCGATGTTGTCGTTTTTAGATATGTTGGAGATTTGGTGTTCCATGTTTCTAATTTAGGACCTAATTACTCTGAGATTCAAGACAATGAGGAGGTTCCCAGAGAGAAGAAAGCGAAGACGAACAGTGGAGAAGCAGAAGCAGTTTCTTCTTCTTCATCAGCAGACAACTCTTGTTTTGTGGCCCTTATCACAGCTTTGAATCTAACGATAGATACACTGTATCTTCCACTACATTTCACAAGCTCAAATGGTCTTACAAGAAAAAACAGCGAGATTGTTTTAACAGATGGAGGGGAAAGATCATGGGTATTGGATCTGAGGTTCGATGAATCGTCTCATACTTTTTATATAAGCCGAGGTTGGAGAAATTTCTGTGATGAAAACGGACAAAAAGCAGGAGATTTCTTTATGTTTAAACTAGTGGGAAACGGGGAAAAGCTTGTGCTCAGTTTCCAGAACATTGCAAGGGAGGACAGTAAAGACGAATGCAGCTCGTTGGACTCATTGATGGATATAGAAAAAAAGAAGTATAGTGCAAAACGAAGAGGTTCACCATATTCATCATATTCGCCAAGTCATAAACAATTCGTAACATTTACACTTCCACCGGATTATGCTAGAATTGGAAGATTGAGTCTTTCAGCGCCGTTCGTTAGGGAGAATGGCATCAACAAGCCTGGGGAGATATGTCTTTTGGATAAACATGGTAGAAAGTGGTTGACAAATCTTCTACTGGACAGTAAAGGGACAATGTCTTTGGGAAAGGGTTGGAAAGATTTTGTTAAAGCAAACAGCTTAGAGACAGGCTTCACCCTCAAGTTGAAATGGGAGGAAACAACTCCTGTACTTAGTTTGTGCTATGCAGAATCTAACAGTGACAGAGAGCAAGAAGAATTTTCAAAAGCTATCGAGAAACGGTCTCTTTTCATGGATACTAAATATCTTCCACCACATTTTACAAGCTCAAATGGTCTTACAAGAAAATGCCACAAGATTGTTTTAAGAGATGGAGGGGAAAGATCTTGGGAATTGGATCTAAAGTTCAACGAATCATCTGATACTTTTTATATAAGCCAAGGTTGGAGAAATTTCTGTGATGAAAACGGACAAAAAGCAGGAGGTTTCTTTATGTTTAAACTAGTGGGAAACGGGGAAACGCTGGTGCTCAGTTTCCGTCCTACAAAATCGATCAATGATGGAAGGCAAAGATACTGTTCAGAAGCTAGCAGGAGAGAATCTGTTGCCACAAAACTTAGCAGTGAGGAAGAGAACATAACATGGGAGGGCAGTAAAGACGAGTGCAGCACATTAGAGTCATTGATGGAGAAAGAAAAAAAGAAGTATAGTCTGAAACCAAGAGGTTCACCTCATTCATCATATTCGCCATGTCATAAGCGATTTGTAACATTTACACTTCCACCGGATTATGCTAGGATTGGAAGATTGGTAAGTTTATCAGAAACAACTCTTGATTCTATTAGTTTTGACGCATGTTTATTCGGCTTCTGTTCAAATATCTACAGAGTCTTCCGGCACCGTTCGTTAGGGAGAATGGCATTAACAAGCCTGGTGAGATATTTCTTTTGGATAAATATGGTAGAAGGTGATACTAGCAACAGAGACAAGATTAACAACAATGAGAATAACAAAGATGAGAGCAGGTCATGGGAGAGAAAGAAAAATCATCCGAAATGGAGAGATTCAACTCCATCAACCCAAAAACAATATGTGACACTGACAATTACACCTTTCAGGCGTCTTTCAAAAATATTCACGAGGGAGAATGACATCAACAAGCCTGGGAAGATTACTCTGTTGGGAAAAGACGGTATAAAGCAGCAGACGAATTTGTTATTTGACAAAACAAATGGATCCATGTCTTTGGGAAGCGGCTGGAAAGATTTTGTTAAAGACAATGGCTTAAAGACAGGTGACTCCTTCACGCTAAAGTTGATTTGGGAAGACCAAACTCCTGTGCTCAGCTTGTGTCCTGCAGAATGTAGCATTGACAGAGAAGCAGGAGGAACAAACCAGAAAAAGTCTCTTCCCATAGAACCTAGCATCTGTACAAAAGTCAGCAAAGACGTGAACATCAAAGAGAAAAACAACAAAGAGGAGAGCAGATCAGTGGATAGAGAAAGAAATCATCTGAGAGAGACAGATGTAACTCCATCAAGCCAAAAACACGTTGTGACATTAACAATTACACCTTCCTCTGTCAAAAGAGATAGACTTATTCTTTCAGCACAATTTGCAAGGGAGAACAATATTAACAAGCCTGGAACGATATATCTGTTGGATAGAGATGGTACAAAGTCGCTGATAAACCTTCAACAAGATAAGAGAGGAACAATGAGTTTGGGAAAAGGTTGGAAAGAATTTGCTGAAGCAAATGACATTAAGTTAGGTGAATCCTTTATGATGAAGTTAGTATGGGAAGGCACAATTCCTATGCTCAGTTTGTTACGTACTGAGTTTAGCAGTTCAAAAGCTAACAAGAAAGAGTCAATTTCTTCAGAACCTAAAAGCAGAGATTCATCCCCAATAATCAAAAACCGATTCGTGACACCAGCACTCACACCTGAAGATGTTAAATCCTGTAAACTGATCCTTACAGCGCAATTTGCAAGGGAGAACAATATTAACAAGCCTGGAACTTTATATCTGTTGGATAGAGATGGTACAAAGTGGCTGACAACGGTTAAACGTGACAACAAGGGAACAATGAGTTTGGGAAATGGTTGGAAAGAGTTCGCTGAAACAAATGACTTAAAGCTAGGCGATTCCTTTAGGATGGAGTTGATATGGGAAGACACAACTCCAATACTCAGTTTGTTACGTACAAAGTTTAGCAGTTCAAAATCTAACAAGGAAGAGTCCATTTCCTCAGAACCTAAAAGTAGAGATTCATCCCAAACAATCGAAAACCGATTCGTGACATTAGCACTTACACCTGAAGATGTCAAAGCCTGTAAACTGATTCTTCCAAGTCAATTCATGAAGGCTAATGGCATCAGTAACAAACTTGGGAAGATAACGCTTTTGGGTGAAAACAAAGTCGAATGGCCGGGATATCTGTTGTCGAGAGATGGAACTGTCGCTTTGGGAAATGGTTGGGAAGGCTTTTGTGAGGCTAATGGCGTGAAGTTAGGACATTCTTTTACTTTGGAGTTTGTTAATGAACAAGATACAACACCGACAATTCCTGTAGTCTTCTTCTTGAAGCATATAGAAGGAAGAGATGACCAGAAGATGGCAGAGCTAAGATCAGATGCGTCGAAGATAACTTGGAAAGTGAAGATAGATGGACAGAGACTCACTGACGGTTGGAAAGAGTTTGCTTTAGCACATGATCTTCGAATCGGTGACATTGTCATTTTCAGACAAGAGAGTGACTTGTCTTTCCATGTGACACTATTAGGACCTAGTTGTTGTGAGATTCAATATGGTTCGTGTTTAGACGAAGAGACCAATCTCGAGAAGAAGAAGAATCCAAATGGAGAAGCAGAGACTTCTTCACTAGGTCGCTCTTGTTTTGTGGCTAAAGTCGCGCCTTCGAGTCTAAGTTATGACTCAATGCATCTTCCAAGGCCTTTTGTGAGAGAAAATGGTGTAGTCACTGGATCTGGAGAGATTGTTCTGATGAATGAAAAGGGCAGATCATGGAAGTTAAAATTGAGACAAAAGCCATCATGCGGAACGGTTTATGTTAAAGGAGGGTGGGTGAGTTTTTGTGATGCCAATGGACTTAGAGCTGGAGATATCTACACTTTCAAACTGATCCAAAGAGGAGGAACTCTTGTTCTACGTTTGTTACCCAATGAAGAGGCAGAGTCTTCTTCACTAGATCCCTCTTGTTTTGTGGCTAATGTCGCGCCTTCGTCTCTACGCTATGACACACTGTATCTTCCAAGGCGTTTTATGAGGGAAAATGGTCTAGACAAAAGATGTGGAAAGATGATTTTGATGAACGAAAAGGGCAAATCATGGACTTTAGATTTGAAACAAAAGAAATCATGCGGAACTTCTTTAATCAAACGAGGATGGAGTAGTTTCTGTCGTGCCAATGGACTTAGAGCTGGAAGTATCATAACTTTCAAACTGATAAAAAAAGGAGGAAATCTTGTTCTACGTTTGCTCACCAACGAGCCAAAAGAAGAAGATGAGTGCTCAGAAGCTAATGAAGTAGAGTCTCTTTCGACAGATCAAGAAAGCAATGAAGAGAGCCACGACGAGAAAATCTCAAGAAGAAAGGAAAAGAAGGGTAACTTGATGTGGAAAGCTTCATCTTCACCATCCGAAAACCGATTTGTGACATTAACTCTTACACCTTACAACATCCTACGTTCTGTACTGCGTCTTCCGATTCCTTTCACGAGGATGAATGGCATCAACGAAGACACTAAAATGACTCTGTTGGATAAACATGGTACGAAGTGGTTAACCACTCTGCGGTTGGTGGACTACAAAAGTAAAAGATTAAGAATGGCAGGAGGCTGGCAAGGATTCATCCAAGCTAACTGTGTGAAGGCAAACGAATCCATCATGTTAGAGCTGATTTGGGAAGAAGACACAAGTTGTATCCTGAAATTCTGCTCCAAGGTGAAGCTATGA
Protein Sequence:
- >481325|Arabidopsis_lyrata|B3|481325
MATFYPQFFHTLVPSFLTHFMIPEDFFLKYIEGTSFAELKSDVSDRTWKVKMSDRRITDGWEDFVVANDFRIGDVVVFRYVGDLVFHVSNLGPNYSEIQDNEEVPREKKAKTNSGEAEAVSSSSSADNSCFVALITALNLTIDTLYLPLHFTSSNGLTRKNSEIVLTDGGERSWVLDLRFDESSHTFYISRGWRNFCDENGQKAGDFFMFKLVGNGEKLVLSFQNIAREDSKDECSSLDSLMDIEKKKYSAKRRGSPYSSYSPSHKQFVTFTLPPDYARIGRLSLSAPFVRENGINKPGEICLLDKHGRKWLTNLLLDSKGTMSLGKGWKDFVKANSLETGFTLKLKWEETTPVLSLCYAESNSDREQEEFSKAIEKRSLFMDTKYLPPHFTSSNGLTRKCHKIVLRDGGERSWELDLKFNESSDTFYISQGWRNFCDENGQKAGGFFMFKLVGNGETLVLSFRPTKSINDGRQRYCSEASRRESVATKLSSEEENITWEGSKDECSTLESLMEKEKKKYSLKPRGSPHSSYSPCHKRFVTFTLPPDYARIGRLVSLSETTLDSISFDACLFGFCSNIYRVFRHRSLGRMALTSLVRYFFWINMVEGDTSNRDKINNNENNKDESRSWERKKNHPKWRDSTPSTQKQYVTLTITPFRRLSKIFTRENDINKPGKITLLGKDGIKQQTNLLFDKTNGSMSLGSGWKDFVKDNGLKTGDSFTLKLIWEDQTPVLSLCPAECSIDREAGGTNQKKSLPIEPSICTKVSKDVNIKEKNNKEESRSVDRERNHLRETDVTPSSQKHVVTLTITPSSVKRDRLILSAQFARENNINKPGTIYLLDRDGTKSLINLQQDKRGTMSLGKGWKEFAEANDIKLGESFMMKLVWEGTIPMLSLLRTEFSSSKANKKESISSEPKSRDSSPIIKNRFVTPALTPEDVKSCKLILTAQFARENNINKPGTLYLLDRDGTKWLTTVKRDNKGTMSLGNGWKEFAETNDLKLGDSFRMELIWEDTTPILSLLRTKFSSSKSNKEESISSEPKSRDSSQTIENRFVTLALTPEDVKACKLILPSQFMKANGISNKLGKITLLGENKVEWPGYLLSRDGTVALGNGWEGFCEANGVKLGHSFTLEFVNEQDTTPTIPVVFFLKHIEGRDDQKMAELRSDASKITWKVKIDGQRLTDGWKEFALAHDLRIGDIVIFRQESDLSFHVTLLGPSCCEIQYGSCLDEETNLEKKKNPNGEAETSSLGRSCFVAKVAPSSLSYDSMHLPRPFVRENGVVTGSGEIVLMNEKGRSWKLKLRQKPSCGTVYVKGGWVSFCDANGLRAGDIYTFKLIQRGGTLVLRLLPNEEAESSSLDPSCFVANVAPSSLRYDTLYLPRRFMRENGLDKRCGKMILMNEKGKSWTLDLKQKKSCGTSLIKRGWSSFCRANGLRAGSIITFKLIKKGGNLVLRLLTNEPKEEDECSEANEVESLSTDQESNEESHDEKISRRKEKKGNLMWKASSSPSENRFVTLTLTPYNILRSVLRLPIPFTRMNGINEDTKMTLLDKHGTKWLTTLRLVDYKSKRLRMAGGWQGFIQANCVKANESIMLELIWEEDTSCILKFCSKVKL*