Information report for 462938428
Gene Details
Functional Annotation
- Refseq: XP_004958699.1 — B3 domain-containing protein Os07g0679700
- Swissprot: Q6Z3U3 — Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
- TrEMBL: K3ZQF4 — K3ZQF4_SETIT; Uncharacterized protein
- STRING: Pavir.Ba00225.1.p — (Panicum virgatum)
- GO:0010030 — Biological Process — positive regulation of seed germination
- GO:2000034 — Biological Process — regulation of seed maturation
- GO:0003677 — Molecular Function — DNA binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Panicum virgatum: Pavir.2NG636600.2.p, Pavir.2NG636600.1.p, Pavir.2KG587300.2.p, Pavir.2KG587300.1.p, Pavir.2KG587300.3.p
- Setaria italica: Seita.2G432900.1.p
- Setaria viridis: Sevir.2G445900.1.p
- Triticum aestivum: Traes_2DS_B1C947D2B.1, Traes_2AS_F4CEC9849.2
- Zea mays: GRMZM2G158162_P03, GRMZM2G158162_P02, GRMZM2G158162_P01, GRMZM2G172621_P01
Sequences
CDS Sequence:
- >462938428|Eragrostis_tef|B3|462938428
ATGGCGGCCAAGAGGTGCATGAACCCGGCCTGCGGCGCGCCGGCGCCGGGGCCGGGAGGCGGAGGGGACTGGAGGAAGGGATGGCCGCTGCGATCCGGCGCCTTCGCCCTGCTCTGCGACAAGTGCGGGTTGGCATATGAGCAGCTTGTCTTTTGTGACATATTTCACCAGAAGGAATCGGGCTGGAGAGATTGCTCATTTTGTGCGAAGCGTCTCCATTGTGGATGTATTGCTTCGAAGAACTCTTATGATTTACTTGATGGCGGGGGAGTTCAATGTGTCACTTGCATGAAAAATTCAGCAGCTCACTCTGTTTCCGGTCAAGGGGCTCCCAAGCTTTTTCCATCACAAAGCAGTCTACGATTTCTTGGTAAAAGCGATGAGTTATTGCTGGGCAGAAAATTTGATCAATCACCCTCTATGATGGTGGATCCCAGAAATGATGATATTACTATTATAAATAAAAACAGTCATCCTTTCATGCTAAGAAACATTGAGGTCGGACAAAGCAGTAGCTTTTTGAGGCAAAAAGAGATAGAAAATGGTCCAAGACAGCAGATTAAATGGGAACAGGCAACTCTTAGTATTGGGGACATCGGAAAGATGCCTTTTTTAACCAGGACTCAAAGTGCGTTAGAATCACCTCAATGCGTGCGAAGAGACGACAGTAAAGATCCAACTACAGATAGCACAACAAGTGAATCACTTTCTGAGGCTTGTCTCAGCATGAGCTTGAGTATTGCTAATAATGGAAGCAAGATGGAGGCTACTTCAACAGTAGAAAGACCTATCCTATCACCAACGACAGCCATGGCTGAAGGAAGGGAACTTACTGCTTCGTTGTCACCCTTTCAGCATGCACAAAGGGCTCGGAATTTTCTGACAAGGCCACCAAGGGTTGGTGAAGGTGCTGCTTTTGATCCAACAAGAGATGTTTTTTCACATCTTCGTGTTGCAAGGCCACCTGCTGAGGGAAGGGGACGCAATCAATTACTTCCTCGGTATTGGCCGAGAATAACAGATCAAGAGCTGCAACAAATATCTGGAGACTCAAATTCCACTATTGTTCCATTGTTCGAGAAGGTCTTGAGTGCTAGTGATGCAGGCCGCATAGGGCGTCTTGTTCTTCCAAAAGCCTGCGCTGAGGCATATTTCCCTCCCATTTCTCAACCAGAAGGTCGCCCCTTGACAATTCAAGATGCAAGAGGAAAAGAATGGCATTTTCAGTTTAGGTTTTGGCCTAATAATAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAGTCCCTGCAGTTACAAGCTGGAGATACAGTGACCTTTAGTCGGATAGAACCTGGAGGGAAACTTGTTATGGGGTTCCGGAAGGCCACAAATACTGTCAGTCTACCAGACTCTCAGATTTCAGCTATTGCAAATGGTTCCCTTCTCAGTGAGACTCTCTTTTCAAGTACGAATGAGAACTTATCAGTAGTAAGTGGTTATCCTGGATTCTTTCAGTCAATAAAGGGAGCTGCAGATCTGCATTCAAGCTCTCTATATGATCATCATGTCAACTCAGCTGACGGGGATGTTAGTTGGCTTAAGACAGATAAATTCGGCAGCAGGCCAGATGAGGGGTCTTTGCGATTTTTACAAAAAAGAAGTCGCAATATTGGTTCCAAAAGCAGGAGGTTTTTAATGGATGCTGAAGATGCCTTGGAACTAAAGCTTACCTGGGAGGAGGCTCAAGAGTTGTTGCGTCCTGCACCCACCTCAAAACCAACTGTTGTGACGATTGAGGACTATGAATTTGAAGAATATGATGTTTCCGGTCAAGGGACTCCAAAGCTTTTTCCATCTCAAAACAGTCTGCAATTTTTTGGTAAAAGCGATGAGTTATTGCTGGGCAGAAAATTTGATCAATCACCCTCTATGATGGTGGATCCCAGAAATGATGATATTACTATTATAAATAAAAACAGTCATCCTTTCATGCTAAGAAACATTGAGGTCGGACAAAGCAGTAGCTTTTTGAGGCAAAAAGAGATAGAAAATGGTCCAAGACAGCAGATTAAATGGGAACAGGCAACTCTTAGTATTGGGGACATCGGAAAGATGCCTTTTTTAACCAGGACTCAAAGTGCGTTAGAATCACCTCAATGCGTGCGAAGAGACGACAGTAAAGATCCAACTACAGATAGCACAACAAGTGAATCACTTTCTGAGGCTTGTCTCAGCATGAGCTTGAGTATTGCTAATAATGGAAGCAAGATGGAGGCTACTTCAACAGTAGAAAGACCTATCCTATCACCAACGACAGCCATGGCTGAAGGAAGGGAACTTACTGCTTCGTTGTCACCCTTTCAGCATGCACAAAGGGCTCGGAATTTTCTGACAAGGCCACCAAGGGTTGGTGAAGGTGCTGCTTTTGATCCAACAAGAGATGTTTTTTCACATCTTCGTGTTGCAAGGCCACCTGCTGAGGGAAGGGGACGCAATCAATTACTTCCTCGGTATTGGCCGAGAATAACAGATCAAGAGCTGCAACAAATATCTGGAGACTCAAATTCCACTATTGTTCCATTGTTCGAGAAGGTCTTGAGTGCTAGTGATGCAGGCCGCATAGGGCGTCTTGTTCTTCCAAAAGCCTGTGCTGAGGCATATTTCCCTCCAATTTCTCAACCAGAAGGTCGCCCCTTGACAATTCAAGATGCAAGAGGAAAAGAATGGCATTTTCAGTTTAGGTTTTGGCCTAATAATAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAGTCCCTGCAATTACAAGCTGGAGATACAGTGACCTTTAGTCGGATAGAACCTGGAGGGAAACTTGTTATGGGGTTCCGGAAGGCCACAAATACTGTCAGTCTACCAGACTCTCAGATTTCAGCTATCGCAAATGGTTCCCTTCTCAGTGAGACACTCTTTTCAAGTGCGAATGAGAACTTATCAGTAGTAAGTGGTTATCCTGGATTCATTCAGTCAATAAAGGGAGCTGCAGATCTGCATTCAAGCTCTCTATATGATCATCATGTCAACTCAGCTGACGGGGATGTTAGTTGGCTTAAGACAGATAAATTCGGCAGCAGGCCAGATGAGGGATCTTTGCAATTTTTACAAAAAAGAAGTCGCAATATTGGTTCCAAAAGCAGGAGGTTTTTAATGGATGCTGAAGATGCCTTGGAACTAAAGCTTACCTGGGAGGAGGCTCAAGAGTTGTTGCGTCCTGCTCCCACCGCAAAACCAACTGTTGTGACGATTGAGGACTATGAATTTGAAGAATATGATGAACCCCCTGTTTTTGCAAAAAGATCAATTTTCACCGTCCGCGCAACAGGGGAACAAGATCAGTGGATTCAATGTGACGACTGCTCAAAATGGCGTCGGTTGCCTCTTAATGTTATTGTTGCCTCTAAATGGACGTGCACTGACAACTCTTGGGACCCAAAAAGCTCATCCTGCTCTGCTCCTGAAGAGTTGACGCCAAAAGAGTTACAAAGTGTTCTGCAGCAGTATGAAGAAATGAGGCGGCGAAAAGGCAGCAGCTACGGTCTGAAGCTGAATGTCGCTGAAATGGATGCATCCAGCCTTGATGCCTTGGCCACAGCCGCAGTATATGGTGAGGCTGGCAACCAAGGTACTGCAGTGGCAACAACCACGAAGCACCCTCGGCATCGCCCCGGCTGCACATGCATTGTGTGCATCCAGCCACCCAGCGGCAAGGGCCCGAAGCACAACCCTTCGTGCACCTGCAACGTGTGCATGACCGTCAAGCGCCGGTTCAAGACATTGATGATGAGGAAGAAGCAGAGGCAATCTGAGCGAGAGGAAGCTGAGGCGAGCAAGAAGATCCAATGGATGAACAGAGACGAGCCCGAGGGTAGCAGCCTGTCAAGGTCCCCGCAGACACTGGACACCACTCGAGACAGTGATGTTACCATGTTCGACAAAGTGCCTGAAACGAACAAGGGACACATTGACCTCAACTTCCACCCCACCGTCCGCGACGATCAGGAGCAGCACGGTTCGCAACCGCGGCCGGTGAGCATGATGGGCCTCCTCGAAGTCGCGACACGCCCCCTGGAGAATTACATGAAGCAGAACGGCCTGACGAGCCTGGCGGGTGAGCAAGGAGGCAGCCCCAGCACGGTCACGGCCCCGCCGGCTCCAGTGGAGAGCGAGGAGCGGACATCCAACGAAAACCGTGTCGCGTCGGTGGAGCGGGAGCGGGAACCAGATGCCATGGCCATCGATGAAGCCGGCGAGAACCAGCAGGAAAAGGCTTCCGACGACGCTGTTGCTGCTACTGCTACTTGA
Protein Sequence:
- >462938428|Eragrostis_tef|B3|462938428
MAAKRCMNPACGAPAPGPGGGGDWRKGWPLRSGAFALLCDKCGLAYEQLVFCDIFHQKESGWRDCSFCAKRLHCGCIASKNSYDLLDGGGVQCVTCMKNSAAHSVSGQGAPKLFPSQSSLRFLGKSDELLLGRKFDQSPSMMVDPRNDDITIINKNSHPFMLRNIEVGQSSSFLRQKEIENGPRQQIKWEQATLSIGDIGKMPFLTRTQSALESPQCVRRDDSKDPTTDSTTSESLSEACLSMSLSIANNGSKMEATSTVERPILSPTTAMAEGRELTASLSPFQHAQRARNFLTRPPRVGEGAAFDPTRDVFSHLRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGRPLTIQDARGKEWHFQFRFWPNNNSRMYVLEGVTPCIQSLQLQAGDTVTFSRIEPGGKLVMGFRKATNTVSLPDSQISAIANGSLLSETLFSSTNENLSVVSGYPGFFQSIKGAADLHSSSLYDHHVNSADGDVSWLKTDKFGSRPDEGSLRFLQKRSRNIGSKSRRFLMDAEDALELKLTWEEAQELLRPAPTSKPTVVTIEDYEFEEYDVSGQGTPKLFPSQNSLQFFGKSDELLLGRKFDQSPSMMVDPRNDDITIINKNSHPFMLRNIEVGQSSSFLRQKEIENGPRQQIKWEQATLSIGDIGKMPFLTRTQSALESPQCVRRDDSKDPTTDSTTSESLSEACLSMSLSIANNGSKMEATSTVERPILSPTTAMAEGRELTASLSPFQHAQRARNFLTRPPRVGEGAAFDPTRDVFSHLRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGRPLTIQDARGKEWHFQFRFWPNNNSRMYVLEGVTPCIQSLQLQAGDTVTFSRIEPGGKLVMGFRKATNTVSLPDSQISAIANGSLLSETLFSSANENLSVVSGYPGFIQSIKGAADLHSSSLYDHHVNSADGDVSWLKTDKFGSRPDEGSLQFLQKRSRNIGSKSRRFLMDAEDALELKLTWEEAQELLRPAPTAKPTVVTIEDYEFEEYDEPPVFAKRSIFTVRATGEQDQWIQCDDCSKWRRLPLNVIVASKWTCTDNSWDPKSSSCSAPEELTPKELQSVLQQYEEMRRRKGSSYGLKLNVAEMDASSLDALATAAVYGEAGNQGTAVATTTKHPRHRPGCTCIVCIQPPSGKGPKHNPSCTCNVCMTVKRRFKTLMMRKKQRQSEREEAEASKKIQWMNRDEPEGSSLSRSPQTLDTTRDSDVTMFDKVPETNKGHIDLNFHPTVRDDQEQHGSQPRPVSMMGLLEVATRPLENYMKQNGLTSLAGEQGGSPSTVTAPPAPVESEERTSNENRVASVEREREPDAMAIDEAGENQQEKASDDAVAATAT