Information report for 462926302
Gene Details
Functional Annotation
- Refseq: XP_025825039.1 — putative B3 domain-containing protein Os04g0347400 isoform X1
- Refseq: XP_025825040.1 — putative B3 domain-containing protein Os04g0347400 isoform X2
- TrEMBL: A0A2T8IBP9 — A0A2T8IBP9_9POAL; Uncharacterized protein
- TrEMBL: A0A2T8IBT7 — A0A2T8IBT7_9POAL; Uncharacterized protein
- STRING: Pavir.Gb02050.1.p — (Panicum virgatum)
- GO:0003677 — Molecular Function — DNA binding
Family Introduction
- The plant-specific B3 superfamily encompasses well-characterized families, such as the auxin response factor (ARF) family and the LAV family, as well as less well understood families, such as RAV and REM.
- All members of the B3 superfamily contain an ~ 110 amino acid region called the B3 domain. This domain was initially named because it was the third basic domain in the maize gene VIVIPAROUS1 (VP1).
- The first and second basic domains (B1 and B2) are specific to the VP1-like proteins, but genes that contain the B3 domain are widespread in plant genomes. The B3 domain of VP1 encodes a sequence-specific DNA binding activity.
Literature and News
Gene Resources
Homologs
- Panicum virgatum: Pavir.7NG075500.1.p, Pavir.7NG075500.2.p, Pavir.7NG075500.6.p, Pavir.7NG075500.4.p, Pavir.7NG076100.2.p, Pavir.7NG076100.1.p, Pavir.7KG131200.2.p, Pavir.7KG131200.1.p, Pavir.7NG076000.2.p, Pavir.7NG076000.1.p, Pavir.7KG012700.1.p, Pavir.7NG075900.2.p, Pavir.7NG075900.1.p, Pavir.7KG012500.1.p, Pavir.7NG076100.4.p, Pavir.7NG076100.3.p, Pavir.7NG075500.7.p, Pavir.7NG075500.5.p, Pavir.7NG075500.3.p
- Setaria italica: Seita.7G054200.3.p, Seita.7G054200.1.p
Sequences
CDS Sequence:
- >462926302|Eragrostis_tef|B3|462926302
ATGGCTTCATTCGGCCGCTCCGGTACCGCCGTCGCCCGGAAGCACCTGCGGGTGCTGCTTCCTTTCTTCCGCAAGAGTCTGGTAAGAGCAACACCTTCCGCCGCCGTTGCGCCGCGAAAAAAATCCCCAGCACGAGGAACTAATTTACCTTGCATTTCGCAGCGCATTCCCGACGAGCTCGCCGAGGACATCGGCGCCGCGGAGGCCCACGTCGAAATCCCTTTCGGCAAGGGCAAGGTCCGGCGGCGCGTCGAGGTGGGGCGGGACGGCGACGGCGCGTTCTTGGGGCGCGGGTGGAAGGAGTTCGCGGCCGCGTGCGGCGTCGGCGCGGGGTGGCTCCTGGTGCTCCGGCACCGCGGCGGCGGCGTGCTCACCGTCAAGGCGTTCGACGACAGCGGCTGGGTTGTCGCGGCCGCGTGCGGCGTCGGCGCGGGGTGGCTCCTGGTGCTCCGGCACCGCGGCGGCGGCGTGCTCACCGTCAAGGCGTTCGACGACAGCGGCTGCTTCAGGGAGCTAGGCAGTCCGCCGCCTGCAGGTAAAGATTCCACCTTTTCTTCCCGTGGTGTCAATTTCTCAATAATTTTTCCACCAGTGAATGAATTTCGAACTGATCGTAGTAAGTCGCAACTGTATTGTTCAGCTGAAGTAACCACGAGCAGCAAAGATGCCACCCGAAGGCTGCAGTTCATTAGTGTGCTTTCGCAGGATTCATTGACAAAGATGCTATTGCCTTCTATGTTTGTGCGACAATGCATTCCCAATGAAGGCCTCAACACTCTTAAGGTCATTGTTTTCGGCCCACTTGGCAAAGTGTATCCCATTGGGCTCGAGATGAACCAATCAGATCTGTTCTTCGCAGGTGGCTGGTCACAATTTTTAGCATTTCATGGCATCACTGAAGCTAATGTTCTCCTGTTAAGGTACGAGGCAAATATGGTGTTCACTGTCAAAGTGTTCACTGCTGATGGATGCCAGATGGAGTCCAAACACAAGGACATCAAAATGCAACAATGTGACGACGAACGGCAGCAAGCAATTTCTGTGGCCAGTTGGAAGTGTAAGAGCAAGAACAATTGGCCAAGTAGTGAAGAACAAAAGAAACCAACAGGATCCATGACTTCTTTGCCCAAGTCACCATTACTGATGAAATCTATCTATGAAATCGGTCCGCCGTCATGGATAAAGAAGCAGATCAATCCCAATGCACTTGCAAAGGAACTTGCTTTGGCAACAGCTTTCTGTGATGCAATTGGGTTGCGGGAACATTGCACAGTCACTCTCAAGACCTCAATGGACAGCTCTGAATCTTGGCAAGTGCTTGGTTCCAAGATAAAGAATAAGAGCTACCGTCTTGGGCAGGGTTGGAAGAAGTTCTGCCTGGACAACAATCTCGAACTAGGTGATATCTGCACATTCAGTGTTGTTGAGACCACAGTTTGGCATGTAGATGTCACGCGTAGTAAGGAAAAGATAAAGCAGTTCCGCTATGTAAACCCTTCTACTTCCAGTAGCAAGCGTATGAGCAACATCAACAGGTCAAGTCGTAAAGGGAAAAATAGACCAAAAGGCTCCAGGACTTATTTGAACAAGGCATTGTCAAAGACAAAATGTGTCGTCGAGATTGGACCACCAGCTTGGATCAAGAAGGAGATCAACACCTGCGCAATAAACAATAAGCTTGTAAGCACGATCATTTCTCTATCGATGCAATATTTGGCACCGGAATTCTGTGAGGCGATTGGAATCCAGGAACCTTGTATTATCACACTCAAGACCTCAACGAGCAGCACTAAGGCTTGGCAGACCCGTGTTATTCCATACAAGAATAGCAGCCACCATGTTGGGGGGTTGGGCTGGAAGAGTTTCTGCCAGGAGAATGGGATCAAATTGGGCGACGTCTGCACTTTCAACATTGTTGAAACCACCGAGTGGCATGTCACCATCACGTGTAGCCGACGGAGCCTCGGAGGCTCACCACCTTCGTCCTGGGCTATGCCGCCGTCCGGCGATCACGGCGGCGCCAAGGTCGAGCACCTACGGGTCCTCCTCCCTTTCTCCCGCGGCAGCCTGCGCATCCCGGACGCGCTCGCCGCGGAGATCGGCGCCGGCGAGGCCCTCGTCGTCGGCCCTTCCGTCGGCAAGGTCAATTTCCATCGCGTCGAGGTCGGGCGGGACGGCGACGGCGCGTTCCTCGGCCGCGGGTGGCCGGAGTTCGCCGCCGCCTGCGGCGTCGGCGCGGGGTGGCTCCTGGTCCTGCGCCACCGCGGCCGCGGCGTGCTTACCGTCAAGGCGTTCGACGCCAGCTGCTGCCTCAAGGAGCTCGGCACTTCCGCTCCACCAGCAGCAACCGTGATCAACAAAGAAGCTCCTCATAGGCTGCAGTTCATCAGTGTGCTTCGAAAAGATTCCATGAAAAAGATGTCAATACCTGCTACGGTCGTGCAACATTACATGCCAAAAGAGCAACCCAATAACAACAGTACGGCCATCTTTTTGGGGCCCCTTTGTAAAGTTTGGCACATAGATCTCGAGATGAATCAGTCGGATGTGTTCTTCGTAGGTCGCTGGTCACAGTTTTTGGCGTTTCATGGCATCACTGAAGCTAATGCACTACTGTTAAGGTACAAGGGCAATATGGTGTTTAAAATCAAAGTGTTTGAGTCAGATGGATGCCAGAGAGAGTCCAAACTAAGGGACATCCAAATACAGCAACCATTGCGAGATATCGAAGAGCAAAAGAGAGCACCATCTGCTTCCATTCAGAAGCGTAAGATCAAGGACAATTGGCCTGGTGAAAAACGAAAGAAACCAAAATGCTTCATGATTTCATCGAACAAGGCATCATCACAGTGGAAAACTGTGTATGAGATTGGGCCGCCGTCATGGATAAGGAAGCATGTCAACACCAATACACTTCAAAATCAACTTGTACGCACAGCCATTTACCTCGCTTTGCCAATATCTTTCTGCGATGCTATCGGGTTGCAGGAAACTTGCACGATCACACTTAAGACCTCAATGAACAGCATTGGGTCTTGGCTAGTGCATGGTCGCCCATACGAGAACAACAGCTACAAGTTTGCACGGGGTTGGAGGAGGTCCAGCAAGGACAACTGTCTCGGGGAAGGCGACATCTGCACGTTCCTTGTGGTTAAGACCACATTGTGGCATGTTGTTATAACACGTTATCATGAAAAGATAAATCATCTCTGCAATCTGGAATCCCCTTTTGTGTCCAGTAGGAAGTACAAGAGCAAGAATGATTGGCGAAGCAGTGAAGGACAAAAGACGCAGGAAGGCTCCATGACTTTGAACAAGGCTTCATTACAAACGAAATGTGTCTTCGAGATTGGGCCGCCATCTTCGATAAAGAAAATGACCAATACCACCAACACACTTGAGAACACCTTGGTACATTGTCGGAAGATGAAAGGAGGAAAGGAGCAGAAAGATGCCAAAGCAAAGAAACAAGTGCAGTTGCCGGAAGAAGAACAGTTGCAGATAAGGAAGAGATGCGCAGGCAGGACTTGGTGCCGCCTCTTCGGAGACAGGGGGTGGAAGAAATTCTGCAAGGAGAATGGGCTCAAGGCTCAAGGAATGGCGCCTGCACCATCGATCAGTGAAGTTGAAACTGTGTGGTGGCATGTCGGAATAACGAAGCTAGGACAACGATACCAGACA
Protein Sequence:
- >462926302|Eragrostis_tef|B3|462926302
MASFGRSGTAVARKHLRVLLPFFRKSLVRATPSAAVAPRKKSPARGTNLPCISQRIPDELAEDIGAAEAHVEIPFGKGKVRRRVEVGRDGDGAFLGRGWKEFAAACGVGAGWLLVLRHRGGGVLTVKAFDDSGWVVAAACGVGAGWLLVLRHRGGGVLTVKAFDDSGCFRELGSPPPAGKDSTFSSRGVNFSIIFPPVNEFRTDRSKSQLYCSAEVTTSSKDATRRLQFISVLSQDSLTKMLLPSMFVRQCIPNEGLNTLKVIVFGPLGKVYPIGLEMNQSDLFFAGGWSQFLAFHGITEANVLLLRYEANMVFTVKVFTADGCQMESKHKDIKMQQCDDERQQAISVASWKCKSKNNWPSSEEQKKPTGSMTSLPKSPLLMKSIYEIGPPSWIKKQINPNALAKELALATAFCDAIGLREHCTVTLKTSMDSSESWQVLGSKIKNKSYRLGQGWKKFCLDNNLELGDICTFSVVETTVWHVDVTRSKEKIKQFRYVNPSTSSSKRMSNINRSSRKGKNRPKGSRTYLNKALSKTKCVVEIGPPAWIKKEINTCAINNKLVSTIISLSMQYLAPEFCEAIGIQEPCIITLKTSTSSTKAWQTRVIPYKNSSHHVGGLGWKSFCQENGIKLGDVCTFNIVETTEWHVTITCSRRSLGGSPPSSWAMPPSGDHGGAKVEHLRVLLPFSRGSLRIPDALAAEIGAGEALVVGPSVGKVNFHRVEVGRDGDGAFLGRGWPEFAAACGVGAGWLLVLRHRGRGVLTVKAFDASCCLKELGTSAPPAATVINKEAPHRLQFISVLRKDSMKKMSIPATVVQHYMPKEQPNNNSTAIFLGPLCKVWHIDLEMNQSDVFFVGRWSQFLAFHGITEANALLLRYKGNMVFKIKVFESDGCQRESKLRDIQIQQPLRDIEEQKRAPSASIQKRKIKDNWPGEKRKKPKCFMISSNKASSQWKTVYEIGPPSWIRKHVNTNTLQNQLVRTAIYLALPISFCDAIGLQETCTITLKTSMNSIGSWLVHGRPYENNSYKFARGWRRSSKDNCLGEGDICTFLVVKTTLWHVVITRYHEKINHLCNLESPFVSSRKYKSKNDWRSSEGQKTQEGSMTLNKASLQTKCVFEIGPPSSIKKMTNTTNTLENTLVHCRKMKGGKEQKDAKAKKQVQLPEEEQLQIRKRCAGRTWCRLFGDRGWKKFCKENGLKAQGMAPAPSISEVETVWWHVGITKLGQRYQT