Information report for Zm00001eb373970
Gene Details
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Functional Annotation
- Refseq: XP_008659167.1 — auxin response factor 16 isoform X1
- Swissprot: A3B9A0 — ARFP_ORYSJ; Auxin response factor 16
- TrEMBL: D9HNV4 — D9HNV4_MAIZE; Auxin response factor
- STRING: Zm00001eb373970 — (Zea mays)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009723 — Biological Process — response to ethylene
- GO:0009734 — Biological Process — auxin-activated signaling pathway
- GO:0010311 — Biological Process — lateral root formation
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0043565 — Molecular Function — sequence-specific DNA binding
- GO:0046983 — Molecular Function — protein dimerization activity
Family Introduction
- Auxin response factors (ARF) are transcription factors that regulate the expression of auxin response genes. ARFs bind with specificity to TGTCTC auxin response elements (AuxRE) in promoters of these genes and function in combination with Aux/IAA (auxin/indole acetic acid) repressors, which dimerize with ARF activators in an auxin-regulated manner.
- Most ARFs consist of an amino-terminal DNA-binding domain (DBD), a middle region that functions as an activation domain (AD) or repression domain (RD), and a carboxy-terminal dimerization domain (CTD). The ARF DBD is classified as a plant-specific B3-type, but requires additional amino-terminal and carboxy-terminal amino acids for efficient in vitro binding to TGTCTC AuxREs.
- The ARF ADs and RDs are located just carboxy-terminal to the DBDs and contain biased amino acid sequences. ARF ADs are enriched in glutamine along with serine and leucine residues, while ARF RDs are enriched in serine, proline, leucine and glycine residues.
Literature and News
- Auxin response factors. DOI: 10.1016/j.pbi.2007.08.014 ; PMID: 17900969
Gene Resources
Homologs
- Oryza sativa: OsARF16
- Panicum virgatum: Pavir.4NG069200.1.p, Pavir.4KG097600.1.p
- Setaria italica: Seita.4G040100.1.p
- Setaria viridis: Sevir.4G037900.3.p, Sevir.4G037900.1.p, Sevir.4G037900.2.p
- Triticum aestivum: Traes_7DS_7375BED72.2, Traes_7BS_3FD792335.1
Sequences
CDS Sequence:
- >Zm00001eb373970|Zea_mays|ARF|Zm00001eb373970
ATGAAGGATCACGGATCGGGCGGCGTCACTCCCAGCCCCGCAGAAGGGGAAAAGAAACCCATCAACTCGGAGCTGTGGCACGCTTGTGCGGGGCCCCTGGTGTCGTTGCCCCCGGTGGGCAGTCTCGTCGTATACTTCCCGCAGGGCCATAGTGAACAGGTTGCTGCTTCAATGCATAAGGAGCTGGACACCGTCCCCAGCTACCCATCTCTGCCTTCTAAGTTGATCTGCAAGCTCCTAAGTCTCACCTTACATGCAGATTCTGAAACTGATGAAGTTTATGCCCAGATGATGCTTCAGCCTGTGAACAAATATGATCGAGACGCAATGCTGGCATCTGAACTGGGTCTGAAACAAAACAAGCAACCAACAGAATTCTTTTGCAAGACGTTGACAGCAAGCGACACAAGTACGCATGGGGGATTCTCAGTGCCACGCCGTGCAGCTGAGAAGATATTTCCACCGCTAGACTTTACGATGCAACCACCAGCCCAAGAACTCATTGCCAAGGATCTGCATGATATTTCATGGAAATTTCGACATATCTATCGAGGTCAACCGAAGAGGCATCTTTTGACAACTGGTTGGAGTGTCTTCGTCAGTACAAAAAGGCTGTTAGCCGGTGATTCAGTTCTCTTTATAAGGGACGAGAAATCTCAACTTCTCTTAGGTATAAGGCGTGCTAGCAGACCCCAACCAGCTCTGTCATCATCAGTTTTATCAAGTGACAGCATGCACATTGGAATCCTTGCAGCAGCAGCCCATGCTGCCGCAAATAGTAGCCCATTTACTATTTTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTCATCCCTTTAGCAAAATACAATAAGGCTTTGTATACACAAGTGTCCCTTGGAATGCGATTCAGAATGCTCTTTGAGACAGAGGATTCAGGGGTAAGAAGATACATGGGCACGATCACAGGCATTGGCGACTTAGATCCACTGCGATGGAAGAATTCTCATTGGCGAAACCTTCAGGTTGGTTGGGATGAATCGACTGCATCTGAGAGGCGCACCCGTGTTTCGATATGGGAGATTGAACCAGTTGCTACACCATTTTATATATGCCCACCACCATTTTTCAGGCCAAAGCTTCCTAAGCAAGCAGGAATGCCAGATGATGAAAACGAGGTTGAGAGTGCTTTCAAAAGAGCGATGCCATGGCTTGCTGATGACTTCGCTCTGAAAGATGTCCAAAATGCATTATTTCCAGGCCTGAGCCTAGTTCAATGGATGGCTATGCAGCAAAATCCTCAGATGCTAGCAACTGCTTCCCCTGCTGTACAGTCGCAGTACTTGACCTCTAATGCACTGGGTATGCAGGATGGGATAGGCAGTGTCAGTGAAGATCCAACAAAAAGATTGACTATGCAGGCCCAAAATATTGGCTTACCTAATTTACAGGCTGGTTCGAAAGTGGACCACCCTGCAATTACCCCATTAGCTCAACACCAGCAACAGCCTCACCATGTATTGCAACAACAGCAGGTCCAACCACTGCAGCAAAGTTCTGCGATCCTACAGCAACAGCAAGCCCAGTTGTTGCAGCAAAATGCCATTCACTTGCAGCAGCAGCAAGAACAACTCCAACGGCAACAATCACAGCCGCAGCAACAGTTCAAAGCTACTGCATGTCTTCAGTCATCGGATCAGCACAAGCTGAAAGAGCAACAGCCTTCAGGTGGACAAGCTGCCTCACAAGTACATTTGTTAAACCAGATTTTGCAACCATCTTCATCTCAGCTACAACAGCTGGGTTTACCCAAGTCACCTACTCAGCGCCCAGGGTTACCAAGTCTAACAACAATGGGTTCTTTGCAGCAGTCACAATTACCTCAGACTCCACAGCCGCAACAAACAGCAGAATACCACCAGGCACTCCTACAAAGTCAACAACCCCAACTACAACAGCTATCACAATCAGAACTGCAGCTGCAGCTGCTTCAAAAGATTCAACAACAAAATCTGCTATCTCAACTGAACCCACAGCATCAGTCCCAGCTGATCCAACAATTGTCTCAGAAAAGCCAGGAAATTCTCCAGCAACAAGTTCTTCAACATCAGTTTGGTGGTGCTGATGCCATGGGTCAGCTCAAACATTTACAGCAAACACCTTTGAACCATAATACAGGATCCTTGCCACCCCAGCAACTTGTAAGATCACACTCAGCACTCACTGAGAGCGAAGAACCTTCCAGCTCAACAGTTCCATCTGGCAGCCGTATCTCCCCAATAAATTCATTTAGTAGAGCAAACCAAGGAACCAGAAATTTGCCTGAGATGCCAGCAACACCGCACATTGAGCACTTACTTCAGGAAATTCAAAGTAAGACAGATAATCGAATCAAGAATGATATACAAGGTAGTAAGGAAACGGTCCATGCACCTAATCGTCATCTAGCTTCAGATCAACTTGATGCGTCATCTGCTACCTCCTTTTGCTTAGATGAGAGCCCACGAGAAGGCTTTTCCTTTCCTCCAGTTTGTTTGGATAACAATGTTCAAGTTGATCCAAGAGAGAATTTTCTTATTGCGGAAAATGTGGACACATTAATGCCTGACGCCCTGTTGTCAAGAGGGATGTCGTCTGGAAAGGGTATATGCAATCTACCTTCTGGACAAAGGGATCATAGGGATGTGGAAAACGAGCTATCCTCTGCTGCATTCAGCTCCCAGTCATTTGGTGTGCCGGACATGTCTTTTAAGCCTGGATGTTCAAGTGATGTTGCTGTTGCTGATGGTGGAATGGCAAGCCAAGGACTGTGGAATAGTCAAACACAGCGGATGAGAACCTTCACCAAGGTTCAAAAGCGTGGATCCGTTGGGAGATCAATTGATATAACACGGTACCGAGGTTACGAAGATCTTCGGCATGATCTTGCATGCATGTTCGGTATTCAAGGGCAGCTTGAAGATCCCTACAGGACGGACTGGAAGCTGGTCTATGTTGACCACGAAAATGACATCCTCCTTGTTGGCGACGACCCATGGGAGGAGTTTGTAAGCTGTGTCAAGAGCATTAAAATATTGTCATCTGTTGAAGTACAGCAAATGAGCTTGGATGGTGACCTTGGCTGCATCCCTCAAACTCAAGCCTGTAGTGCTTCTGATGACGCAAATGCATGGAGGGCCTGA
Protein Sequence:
- >Zm00001eb373970|Zea_mays|ARF|Zm00001eb373970
MKDHGSGGVTPSPAEGEKKPINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDTVPSYPSLPSKLICKLLSLTLHADSETDEVYAQMMLQPVNKYDRDAMLASELGLKQNKQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKSQLLLGIRRASRPQPALSSSVLSSDSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQMLATASPAVQSQYLTSNALGMQDGIGSVSEDPTKRLTMQAQNIGLPNLQAGSKVDHPAITPLAQHQQQPHHVLQQQQVQPLQQSSAILQQQQAQLLQQNAIHLQQQQEQLQRQQSQPQQQFKATACLQSSDQHKLKEQQPSGGQAASQVHLLNQILQPSSSQLQQLGLPKSPTQRPGLPSLTTMGSLQQSQLPQTPQPQQTAEYHQALLQSQQPQLQQLSQSELQLQLLQKIQQQNLLSQLNPQHQSQLIQQLSQKSQEILQQQVLQHQFGGADAMGQLKHLQQTPLNHNTGSLPPQQLVRSHSALTESEEPSSSTVPSGSRISPINSFSRANQGTRNLPEMPATPHIEHLLQEIQSKTDNRIKNDIQGSKETVHAPNRHLASDQLDASSATSFCLDESPREGFSFPPVCLDNNVQVDPRENFLIAENVDTLMPDALLSRGMSSGKGICNLPSGQRDHRDVENELSSAAFSSQSFGVPDMSFKPGCSSDVAVADGGMASQGLWNSQTQRMRTFTKVQKRGSVGRSIDITRYRGYEDLRHDLACMFGIQGQLEDPYRTDWKLVYVDHENDILLVGDDPWEEFVSCVKSIKILSSVEVQQMSLDGDLGCIPQTQACSASDDANAWRA