Gene Details:

• Gene ID: EMT31390
• Gene Family: ARF Family
• Description: ARF Family protein
• Species: Aegilops tauschii
• Source: ARF family gene from PlantTFDB

Protein Features:

• Gene3D:  G3DSA:2.40.330.10
• SuperFamily:  SSF101936
• Pfam:  PF02362
• PROSITE profile:  PS50863
• SMART:  SM01019
• Pfam:  PF06507
• PROSITE profile:  PS51745
• SuperFamily:  SSF54277
• Pfam:  PF02309
• InterPro:  IPR015300    IPR003340    IPR010525    IPR000270    IPR033389

Annotation Proteins:

• Refseq:  XP_020160868.1  — auxin response factor 11 isoform X1
• Swissprot:  Q01K26  — ARFK_ORYSI; Auxin response factor 11
• Swissprot:  Q8S983  — ARFK_ORYSJ; Auxin response factor 11
• TrEMBL:  M8C287  — M8C287_AEGTA; Auxin response factor
• STRING:  EMT31390  — (Aegilops tauschii)

Gene Ontology:

• GO:0006346  — Biological Process — methylation-dependent chromatin silencing
• GO:0007155  — Biological Process — cell adhesion
• GO:0009734  — Biological Process — auxin-activated signaling pathway
• GO:0009741  — Biological Process — response to brassinosteroid
• GO:0009855  — Biological Process — determination of bilateral symmetry
• GO:0009909  — Biological Process — regulation of flower development
• GO:0009942  — Biological Process — longitudinal axis specification
• GO:0009965  — Biological Process — leaf morphogenesis
• GO:0010014  — Biological Process — meristem initiation
• GO:0010073  — Biological Process — meristem maintenance
• GO:0010090  — Biological Process — trichome morphogenesis
• GO:0010305  — Biological Process — leaf vascular tissue pattern formation
• GO:0016246  — Biological Process — RNA interference
• GO:0031048  — Biological Process — chromatin silencing by small RNA
• GO:0045010  — Biological Process — actin nucleation
• GO:0048439  — Biological Process — flower morphogenesis
• GO:0048481  — Biological Process — plant ovule development
• GO:0048527  — Biological Process — lateral root development
• GO:0048765  — Biological Process — root hair cell differentiation
• GO:0051567  — Biological Process — histone H3-K9 methylation
• GO:0071555  — Biological Process — cell wall organization
• GO:0005634  — Cellular Component — nucleus
• GO:0016020  — Cellular Component — membrane
• GO:0003700  — Molecular Function — transcription factor activity, sequence-specific DNA binding
• GO:0042802  — Molecular Function — identical protein binding
• GO:0044212  — Molecular Function — transcription regulatory region DNA binding

Family Introduction:

• Auxin response factors (ARF) are transcription factors that regulate the expression of auxin response genes. ARFs bind with specificity to TGTCTC auxin response elements (AuxRE) in promoters of these genes and function in combination with Aux/IAA (auxin/indole acetic acid) repressors, which dimerize with ARF activators in an auxin-regulated manner.
• Most ARFs consist of an amino-terminal DNA-binding domain (DBD), a middle region that functions as an activation domain (AD) or repression domain (RD), and a carboxy-terminal dimerization domain (CTD). The ARF DBD is classified as a plant-specific B3-type, but requires additional amino-terminal and carboxy-terminal amino acids for efficient in vitro binding to TGTCTC AuxREs.
• The ARF ADs and RDs are located just carboxy-terminal to the DBDs and contain biased amino acid sequences. ARF ADs are enriched in glutamine along with serine and leucine residues, while ARF RDs are enriched in serine, proline, leucine and glycine residues.

Literature:

• Auxin response factors.   DOI:  10.1016/j.pbi.2007.08.014 ;  PMID:  17900969

Sequences: