Gene Details:

  • Gene ID: Aco025401.1
  • Gene Family: ARF Family
  • Description: ARF Family protein
  • Species: Ananas comosus
  • Source: ARF family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_020114530.1  — auxin response factor 11
  • Swissprot:  Q01K26  — ARFK_ORYSI; Auxin response factor 11
  • Swissprot:  Q8S983  — ARFK_ORYSJ; Auxin response factor 11
  • TrEMBL:  A0A199W338  — A0A199W338_ANACO; Auxin response factor
  • STRING:  BRADI5G25157.1  — (Brachypodium distachyon)

Gene Ontology:

  • GO:0006355  — Biological Process — regulation of transcription, DNA-templated
  • GO:0009733  — Biological Process — response to auxin
  • GO:0009908  — Biological Process — flower development
  • GO:0009942  — Biological Process — longitudinal axis specification
  • GO:0010305  — Biological Process — leaf vascular tissue pattern formation
  • GO:0048364  — Biological Process — root development
  • GO:0048507  — Biological Process — meristem development
  • GO:0005634  — Cellular Component — nucleus
  • GO:0016020  — Cellular Component — membrane
  • GO:0042802  — Molecular Function — identical protein binding
  • GO:0044212  — Molecular Function — transcription regulatory region DNA binding

Family Introduction:

  • Auxin response factors (ARF) are transcription factors that regulate the expression of auxin response genes. ARFs bind with specificity to TGTCTC auxin response elements (AuxRE) in promoters of these genes and function in combination with Aux/IAA (auxin/indole acetic acid) repressors, which dimerize with ARF activators in an auxin-regulated manner.
  • Most ARFs consist of an amino-terminal DNA-binding domain (DBD), a middle region that functions as an activation domain (AD) or repression domain (RD), and a carboxy-terminal dimerization domain (CTD). The ARF DBD is classified as a plant-specific B3-type, but requires additional amino-terminal and carboxy-terminal amino acids for efficient in vitro binding to TGTCTC AuxREs.
  • The ARF ADs and RDs are located just carboxy-terminal to the DBDs and contain biased amino acid sequences. ARF ADs are enriched in glutamine along with serine and leucine residues, while ARF RDs are enriched in serine, proline, leucine and glycine residues.

Literature:

Sequences:

CDS Sequence:
  • >Aco025401.1|Ananas_comosus|ARF|Aco025401.1
    ATGTGTTCCACTCTGGAGCAGGGGAAGAGCGCTTGTTTGAGCAGTGCAGCTCCGGTGCTCGACGAAATGAAGCTTCTCGCAGAAGCGCAGTGTAAGACAGGTGCAAAGAATGTGATACACTCTGAGCTTTGGCATGCCTGCGCTGGCCCACTTGTGTCGCTGCCGCCGCCAGGAAGCCTTGTGTATTATTTTCCCCAGGGACATAGTGAACAGGTGACAGCTACAACTAGAAGGACTGCAAATTCGCACATTCCTAACTACCCGAATCTCCCGTCTCAGTTGATGTGTCAAGTTCACAATGTCACGCTGCATGCTGACAAGGATACCGACGAGATTTATGCCCAGATGACCCTTCAGCCAGTGAACTCTGAAAGCGATATTCTTCCTATCCCAGATCTTGGGCTTACAAGAAGTAAGCATCCAACTGATTTCTTCTGCAAGAATTTAACTGCAAGCGATACGAGCACACATGGTGGCTTCTCAGTGCCTCGAAGAGCTGCAGAAAAGCTTTTCCCCCAACTGGATTATTCTGTCCAACCCCCAAATCAGGAGCTCACCGTCCGAGATTTGCACGATAACTTGTGGACATTTCGGCACATTTATCGTGGACAGCCAAAGCGACATCTTCTGACGACTGGGTGGAGCCTCTTCGTTGGTACAAAACGACTAAAAGCTGGGGATGCTGTCTTGTTTATAAGGGATGAGAAGTCCCAGCTACTGTTGGGTGTAAGACGCGCAAATCGTCAACAAAGTGCATTGCCTTCATCCGTACTGTCCACTGATAGCATGCACATAGGTGTCCTGGCTGCTGCAGCCCATGCTGCAGCCAACCGCAGCCCGTTCACGGTTTACTATAACCCAAGGGCATGCCCTTCGGATTTTATAATACCATTAGCAAAGTACAATAAAGCTGCATATACGCAGGTATCAGTTGGGATGAGATTTGGAATGATGTTTGAGACAGAAGAGTCTACCAAAAGAAGATACATGGGCACGATAGTGGGAATCAATGACTACGACCCCTTAAGATGGCCTAATTCGAAGTGGCGCAATTTACAGGTAGAATGGGACGAATATGGCTGTGGAGAGAGACCAGAAAGGGTTAGCCTATTTGAAATTGAAATGCCGGAGAGCCTTTTTGTTTTTCCTTCTCCATCAGTGAATCCAAAGCGCCAATGCCTTCCTGGATGTTCTATGCCTGGGACAGAGTCCATTGGATTTCAGAACATGACATCAAGGAGTGTAGAGAATATGTATGGCAGTGTTGATCATTTAGTCTCTGGTTTAGCTATGAAGTTTCTAAATCACTTTCAGAATTCTAACGTAAGCGGCCAGCTCGAGTGCCTGCAGCCATTATATGGTAGCACAGTACACGACATCAAGTGCAATTTCATCTCGAGATCTTATCCTGCTATTTTACCAACATCTAGTGCAATTCAATATCCACTCAAGCAGAAGGATGTACTTGGAAATTTGGAAATGCAGAAGGAACTTCATCTTCCACTGCAAAATGCCCATTTAGAAAATCGTAGCTCCCAAAGTTGTCGTTTGCCTCGAGGTGCTGATTTAGTTTGCGCATCAGGGGTGCATGTGGCTTCCCAAGAACAATGTGAGGAAGAATCTAATTCAGGTCTAAATTGCGTGGATCGAAATGAAAAAAATGAAGCTTCAGTTCCAGCCGAAAATCAAGATGAGGAGTATCATTCTATGAAGAGACAACTGTCTGATCAATCTCTGACAGACCATTTAGAATGTCGTAATGGTGAAAACTCCTCCGACCCACTTAATCATGAGAACTTTTTTTCCAAAATTATTGATAGCCAGGGGCTACAACATGACAAATGCAGTGATCTCCAGCAAATTAAACAGCATCTTGATCCCGTCGTGATGTCAACAAATCAAGAATCAAGTTGCTCACCTGATAACAGCGACCCAGTCAGCAAACCGCCACTTCAAGGATGCATGTCGCATTTTTTGGATAATGCGGATTGGATGTTCCAGCCTTCTTATTATCAAGATTTTAGTGGCATCCAACATAGCCTAACAACTGATGATAGGCCAGATGCTCTATTTTTGTCCGCTTCAGAGAATATTACAAATTCCTCTGCTGATATATCTTCAATAGTAAACCCACGAGCTTTCGATCCCCACGAAACCTTTCAATCCCCCTACCTTTCAGATTTGCATACTCTCCAATGCCTGCCGAATTCTGTTCAAGAATTCTTAGGCAGCCCAGAGCTAAATCCACTAAGCTTTATTTCATCGGAGGATCAAAATGTAGCTGTTCAAGCATCTAACAAATGTGGAAGGAAGGGCTTATCGGAGAAGAGCAACGATCAGAGCGAGACTTTCAGTAATCTCCACTTTGAAGACGGCGACAGAGGCTTTCTTGTCGGTCCATCCGCTCAAGCTACGACAACCTTAGAGGACTTTGACTTAGGGGAATATTCCAAATTTAATGTTCCTTTCCAAAGTCTTGCCTGTGACTTCGTTTCGCAGGAAATGCAGTCTCAGATTACCTCAACAAGCTTTGCAGAGTCTCAAGTCATTTCTCTACACGAAAATTTTGACCACTCCGGAGGTATTTCGTCTTGCAGTATTGATGCATCTGATTACGATTGGAGTAGAGATACCAAGAAGCAAGTCTCCCAACCGCCTTTGAGAACATTCACGAAGGTTCAAAAGCTAGGATCAGTTGGAAGATCAATAGATGTGACACGCTTTAGGGACTACCGAGAATTAAAATCTGCAATTGCTTTCATGTTTGGACTTGAGGGGAAGCTGGATGATAGCAGCTGTTCAGAGTGGAAGCTTGTTTACGTAGATTATGAAAACGATGTTCTTCTTGTTGGAGATGACCCTTGGGAGGAGTTCATTAACTGTGTAAGATGCATCAGAATCTTATCTCCTTCTGAAGTACAACAGATGAGCCAAGACGGCCTGCAGCTCATGAATGGTTTCGTCCAACTGGGTCAATAG
Protein Sequence:
  • >Aco025401.1|Ananas_comosus|ARF|Aco025401.1
    MCSTLEQGKSACLSSAAPVLDEMKLLAEAQCKTGAKNVIHSELWHACAGPLVSLPPPGSLVYYFPQGHSEQVTATTRRTANSHIPNYPNLPSQLMCQVHNVTLHADKDTDEIYAQMTLQPVNSESDILPIPDLGLTRSKHPTDFFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSVQPPNQELTVRDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVGTKRLKAGDAVLFIRDEKSQLLLGVRRANRQQSALPSSVLSTDSMHIGVLAAAAHAAANRSPFTVYYNPRACPSDFIIPLAKYNKAAYTQVSVGMRFGMMFETEESTKRRYMGTIVGINDYDPLRWPNSKWRNLQVEWDEYGCGERPERVSLFEIEMPESLFVFPSPSVNPKRQCLPGCSMPGTESIGFQNMTSRSVENMYGSVDHLVSGLAMKFLNHFQNSNVSGQLECLQPLYGSTVHDIKCNFISRSYPAILPTSSAIQYPLKQKDVLGNLEMQKELHLPLQNAHLENRSSQSCRLPRGADLVCASGVHVASQEQCEEESNSGLNCVDRNEKNEASVPAENQDEEYHSMKRQLSDQSLTDHLECRNGENSSDPLNHENFFSKIIDSQGLQHDKCSDLQQIKQHLDPVVMSTNQESSCSPDNSDPVSKPPLQGCMSHFLDNADWMFQPSYYQDFSGIQHSLTTDDRPDALFLSASENITNSSADISSIVNPRAFDPHETFQSPYLSDLHTLQCLPNSVQEFLGSPELNPLSFISSEDQNVAVQASNKCGRKGLSEKSNDQSETFSNLHFEDGDRGFLVGPSAQATTTLEDFDLGEYSKFNVPFQSLACDFVSQEMQSQITSTSFAESQVISLHENFDHSGGISSCSIDASDYDWSRDTKKQVSQPPLRTFTKVQKLGSVGRSIDVTRFRDYRELKSAIAFMFGLEGKLDDSSCSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSQDGLQLMNGFVQLGQ*