Information report for SlDEAD39
Gene Details
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Functional Descriptions
- The res (restored cell structure by salinity) tomato mutant reveals the role of the DEAD-box RNA helicase SlDEAD39 in plant development and salt response.
- Functional analysis of res mutant proved SlDEAD39 is involved in the in vivo processing of the chloroplast, 23S rRNA, at the hidden break-B site, a feature also supported by in vitro binding experiments of the protein.
- The function of SlDEAD39 is crucial for chloroplast structure and function under non-stressful culture conditions but not under salt-stress condition, where the chloroplastidial 23S rRNA processing is partially recovered, and therefore are chloroplast function and structure.
- SlDEAD39 must participate in the processing of the 23S transcript by specifically promoting the cleavage of the immature 23S rRNA at the hidden break B site.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 101257152
- UniProt accessions: A0A3Q7JB73
- AlphaFoldDB: A0A3Q7JB73
- EnsemblPlants: Solyc12g056740.2.1
- Gramene: Solyc12g056740.2.1
- KEGG: sly:101257152
- GO: GO:0003724 , GO:0003729 , GO:0005524 , GO:0016787
- OMA: VFRVSKF
- InterPro: IPR001650 , IPR011545 , IPR014001 , IPR014014 , IPR027417
- PANTHER: PTHR47960
- SUPFAM: SSF52540
- PROSITE: PS51192 , PS51194 , PS51195
- Gene3D: 3.40.50.300
- OrthoDB: A0A3Q7JB73
- Pfam: PF00270 , PF00271
- SMR: A0A3Q7JB73
- CDD: cd00268 , cd18787
- STRING: 4081.A0A3Q7JB73
Sequences
cDNA Sequence
- >Solyc12g056740.2.1
GTTGCCATTATCAGTAGTGGAGCTTTAGCCTCTGTATATACTCCATTAGAGTGTCATCAACCAAGCTTCAAGATAGCACAAATGGGAGTTACAGGCAGAGCCCTGCTCAACCTTTCTCTCCTCCCTTTTCGTTTTCCCTTAACCAGAAACCCTCTTCTTCCTCAGCCTCGCAGGGTTTATCTAGGGTTTAGACCCCTTTCTTCTACAACTACTACTGCTCCTTCTTATGCTGCTGTTGCTGAAGAAGAAGATGCACTTCAACCTGTTAAGCATTCAATTCTATTAGAAAGACTTAGACTTAGACATCTCAGAGAATCCCCAAAACCCAATTCAGAAATCAAGCAATTAGTACGGAAACAAGTAGAGGTTGATGATGGAGGTGTTAAGAAGAGTAAGAAGAAAGCGGTGGCGTCGAGTTTTGAGGAATTGGGGTTGACGGAAGAGGTTATGGGGGCTTTAGGTGAAATGGGTATTTCGGAACCGACTGAGATTCAGTCGATTGGTATACCTGCTGTGATTGAAGGGAAAAGTGTGGTATTGGGTTCACATACGGGTTCTGGGAAGACTCTTGCTTATATGTTGCCTATTGTTCAGTTGTTGAGGCGAGATGAGGAATTGGATGGTATGCTCATGAAGCCTAGGCGCCCCCGAGCTGTTGTGTTGTGCCCTACTAGGGAGCTCTGTGAGCAGGTTTTTCGTGTGGCAAAATCTATCAGTCATCATGCTCGATTTAGATCTACCATGGTTAGTGGTGGCGGACGTCTGAGACCTCAAGAAGATTGTTTGGCAAGCCCAATTGACATGATTGTGGGGACTCCAGGCAGGGTTCTACAACATATTGAAGAGGGAAATATGGTTTATGGTGACATCAGATACTTGGTCTTGGATGAGGCTGATACCATGTTTGATCGTGGTTTTGGTCCAGATATACGAAAATTTCTTGCGCCATTGAAAAACCGTGCTTCAAAGACTGATGATGAAGGATTTCAAACCGTTTTGGTGACGGCAACAATGACAAAGGCAGTTCAAAAGCTGGTTGATGAGGAATTTCAAGGGATTGAGCATTTACGTACTTCTTCATTGCATAAGAAGATTGCTTCTGCTCGTCATGATTTCATCAAGCTTTCAGGTTCTGAGAACAAGATGGAGGCGTTGCTACAGGTTCTTGAGCCAAGTTTAGCAAAGGGAAACAGGGTGATGGTATTCTGTAACACATTGAATTCTAGTCGTGCTGTGGATCACTTTCTCAATGAAACCCAAATTTCTACTGTAAACTACCATGGGGAAGTTCCAGCAGAGCAGAGGGTTGAAAACCTTGCAAAGTTTAAGAGCAATGAAGGAGATTGTCCTACTTTAGTCTGCACAGACTTGGCTGCTAGAGGACTGGACTTGGATGTGGATCATGTCATCATGTTTGATTTCCCTAAGAATTCTATTGACTATCTCCATCGCACGGGAAGGACTGCTCGTATGGGTGCCAAAGGGAAAGTAACAAGTTTAATTGCCAAAAAGGACTTACTTTTGGCCAATTGCATTGAGGAAGCCATAAAGAAGAATGAGAGCTTGGAGTCTCTCTCGGTAGACGGTATCAAAAGAGACAATGCCAGGTCTCGCATTACTGAACAGAAGGACAAGCGTGAAAAGTCGGTGAAAGTTTCAAATTCAAGAGGCAAGGCTACAGCTTCCACAGGCAAATCCTCTAGTGTTACAAGGAAGACTATCGATTCAAAAAGGTCTGCAAAGACTACCGATTCAAAAAGATCTCCAAAGACTACCGATTCTAAAAGATCCCCAGGAACCAAGTTTGGTAAAGTACCAGCTAAGTCAAAACCAAAGATAGCTATGAAAGTGTCCAAAAAGACCAGCAGTTCAACAGGAAAGAGACGAGTAGATAGCCGAAGCTCCAGTGTCTCCACAAAGAAACTAAATGTTGTTGGATTCAGGGGTAGGAGTTCATCATCGAGTAATAATACAAGGGTTAAGTCTGCTTAAAATGGCTAGAACTCAATCATGTATACGGAACTTTGTTTTCTTTTCTTTCTCTTGTAAAATTTACAATTGATGATTTTTGTGTTTTGGTCATCAAATTGTGCAATGCAAAGAGCCATTTTGTCAG
CDS Sequence
- >Solyc12g056740.2.1
ATGGGAGTTACAGGCAGAGCCCTGCTCAACCTTTCTCTCCTCCCTTTTCGTTTTCCCTTAACCAGAAACCCTCTTCTTCCTCAGCCTCGCAGGGTTTATCTAGGGTTTAGACCCCTTTCTTCTACAACTACTACTGCTCCTTCTTATGCTGCTGTTGCTGAAGAAGAAGATGCACTTCAACCTGTTAAGCATTCAATTCTATTAGAAAGACTTAGACTTAGACATCTCAGAGAATCCCCAAAACCCAATTCAGAAATCAAGCAATTAGTACGGAAACAAGTAGAGGTTGATGATGGAGGTGTTAAGAAGAGTAAGAAGAAAGCGGTGGCGTCGAGTTTTGAGGAATTGGGGTTGACGGAAGAGGTTATGGGGGCTTTAGGTGAAATGGGTATTTCGGAACCGACTGAGATTCAGTCGATTGGTATACCTGCTGTGATTGAAGGGAAAAGTGTGGTATTGGGTTCACATACGGGTTCTGGGAAGACTCTTGCTTATATGTTGCCTATTGTTCAGTTGTTGAGGCGAGATGAGGAATTGGATGGTATGCTCATGAAGCCTAGGCGCCCCCGAGCTGTTGTGTTGTGCCCTACTAGGGAGCTCTGTGAGCAGGTTTTTCGTGTGGCAAAATCTATCAGTCATCATGCTCGATTTAGATCTACCATGGTTAGTGGTGGCGGACGTCTGAGACCTCAAGAAGATTGTTTGGCAAGCCCAATTGACATGATTGTGGGGACTCCAGGCAGGGTTCTACAACATATTGAAGAGGGAAATATGGTTTATGGTGACATCAGATACTTGGTCTTGGATGAGGCTGATACCATGTTTGATCGTGGTTTTGGTCCAGATATACGAAAATTTCTTGCGCCATTGAAAAACCGTGCTTCAAAGACTGATGATGAAGGATTTCAAACCGTTTTGGTGACGGCAACAATGACAAAGGCAGTTCAAAAGCTGGTTGATGAGGAATTTCAAGGGATTGAGCATTTACGTACTTCTTCATTGCATAAGAAGATTGCTTCTGCTCGTCATGATTTCATCAAGCTTTCAGGTTCTGAGAACAAGATGGAGGCGTTGCTACAGGTTCTTGAGCCAAGTTTAGCAAAGGGAAACAGGGTGATGGTATTCTGTAACACATTGAATTCTAGTCGTGCTGTGGATCACTTTCTCAATGAAACCCAAATTTCTACTGTAAACTACCATGGGGAAGTTCCAGCAGAGCAGAGGGTTGAAAACCTTGCAAAGTTTAAGAGCAATGAAGGAGATTGTCCTACTTTAGTCTGCACAGACTTGGCTGCTAGAGGACTGGACTTGGATGTGGATCATGTCATCATGTTTGATTTCCCTAAGAATTCTATTGACTATCTCCATCGCACGGGAAGGACTGCTCGTATGGGTGCCAAAGGGAAAGTAACAAGTTTAATTGCCAAAAAGGACTTACTTTTGGCCAATTGCATTGAGGAAGCCATAAAGAAGAATGAGAGCTTGGAGTCTCTCTCGGTAGACGGTATCAAAAGAGACAATGCCAGGTCTCGCATTACTGAACAGAAGGACAAGCGTGAAAAGTCGGTGAAAGTTTCAAATTCAAGAGGCAAGGCTACAGCTTCCACAGGCAAATCCTCTAGTGTTACAAGGAAGACTATCGATTCAAAAAGGTCTGCAAAGACTACCGATTCAAAAAGATCTCCAAAGACTACCGATTCTAAAAGATCCCCAGGAACCAAGTTTGGTAAAGTACCAGCTAAGTCAAAACCAAAGATAGCTATGAAAGTGTCCAAAAAGACCAGCAGTTCAACAGGAAAGAGACGAGTAGATAGCCGAAGCTCCAGTGTCTCCACAAAGAAACTAAATGTTGTTGGATTCAGGGGTAGGAGTTCATCATCGAGTAATAATACAAGGGTTAAGTCTGCTTAA
Protein Sequence
- >Solyc12g056740.2.1
MGVTGRALLNLSLLPFRFPLTRNPLLPQPRRVYLGFRPLSSTTTTAPSYAAVAEEEDALQPVKHSILLERLRLRHLRESPKPNSEIKQLVRKQVEVDDGGVKKSKKKAVASSFEELGLTEEVMGALGEMGISEPTEIQSIGIPAVIEGKSVVLGSHTGSGKTLAYMLPIVQLLRRDEELDGMLMKPRRPRAVVLCPTRELCEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDCLASPIDMIVGTPGRVLQHIEEGNMVYGDIRYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKTDDEGFQTVLVTATMTKAVQKLVDEEFQGIEHLRTSSLHKKIASARHDFIKLSGSENKMEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLNETQISTVNYHGEVPAEQRVENLAKFKSNEGDCPTLVCTDLAARGLDLDVDHVIMFDFPKNSIDYLHRTGRTARMGAKGKVTSLIAKKDLLLANCIEEAIKKNESLESLSVDGIKRDNARSRITEQKDKREKSVKVSNSRGKATASTGKSSSVTRKTIDSKRSAKTTDSKRSPKTTDSKRSPGTKFGKVPAKSKPKIAMKVSKKTSSSTGKRRVDSRSSSVSTKKLNVVGFRGRSSSSSNNTRVKSA*