Information report for SlRIP1b
Gene Details
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Functional Descriptions
- SlRIP1b is a global organellar RNA editing factor, required for normal fruit development in tomato plants.
- Mutants of SlRIP1b, obtained by CRISPR/Cas9 strategy, exhibited abnormal carpel development and grew into fruit with more locules.
- The SlRIP1b mutants display increased H2O2 and aberrant mitochondrial morphologies, which are associated with defects in cytochrome c biosynthesis and assembly of respiratory complex III.
- Our results indicate that SlRIP1b is a global editing factor that plays a key role in CCM and oxidative phosphorylation system biogenesis during fruit development in tomato plants.
Functional Keywords
- development , oxidative , h2o2
Literature and News
Gene Resources
- NCBI ID: 101259714
- UniProt accessions: A0A3Q7J557
- AlphaFoldDB: A0A3Q7J557
- EnsemblPlants: Solyc12g014230.2.1
- Gramene: Solyc12g014230.2.1
- KEGG: sly:101259714
- GO: GO:0005739 , GO:0016554 , GO:0080156
- OMA: HAGGMQQ
- InterPro: IPR039206 , IPR054059
- PANTHER: PTHR31346 , PTHR31346:SF30
- OrthoDB: A0A3Q7J557
- Pfam: PF21864
- SMR: A0A3Q7J557
- STRING: 4081.A0A3Q7J557
Sequences
cDNA Sequence
- >Solyc12g014230.2.1
CACAGAGCTAGCTAGGGTTTTGTTGAAACGAAAATGGCGTCTCGCTCTTTGCTCAATGCATTCAAACGCTCCTGCAACTCATTTTCTCTCTCTACAACTCCGAGCACTTACTCACTCCACCTTCTCCGACCACTTCATGCCGTTGCGGCCAACCTACGAAATGTCTCTCCGGCACCGACGCCGTTTTCTCGAGGTTTTGCCACTCGTCAAACGTCGTCGTCACTGAATGATCCAAATCCTAACTGGTCCAATCGACCTCCGAAGGAAACGATTTTGCTTGACGGCTGTGATTTTGAGCACTGGCTTGTTGTGATGGAGAAGCCTGAAGGTGATCCTACCAGAGATGAAATTATTGATAGCTACATCAAAACACTTGCTACGATTGTTGGAAGTGAGGAGGAAGCACGGATGAAGATTTATTCCGTCTCAACTAGACATTACTTTGCTTTTGGTGCCCTTGTATCTGAAGAGCTTTCTTATAAACTAAAAGAGCTGCCTAAGGTTCGTTGGGTGCTTCCTGATTCTTATCTCGATGTTAGAAATAAAGATTATGGAGGGGAACCTTTTATCAATGGACAGGCTGTACCATATGACCCGAAATACCATGAGGAATGGGTGAGAAACAATGCTCGTGCTAATGAGAGAAACAGGCGCAATGACCGACCTCGTAATTTTGATAGGTCCAGAAACTTTGAGAGAAGAAGAGAGATGCAGAATCAACCCAGTCAGAACCCTGGATCTAACATGGCAGCAGGGGGGCCTCCCAACATGGGCGGCATGCAGCAACCTAACATGGGTGGAATGCACCAGCAGCAAGGCATGGGAGGGCCACCACCTCATGCAGGCGGGATGCACCAGCAGCAAGGCTATGGAGGGCCACCACCTCATGCAGGCGGTATGCAGCAGCCGGACATGAGAGGACCACCCATGCAGCAGCAAGGCTATGGAGGGCCACCACCTCATGCTGGCGGGATGCAGCAGCCGGACATGAGAGGGCCACCCATGCAGCAGCAAGGCTATGGAGGGCCACCACCTCATGCAGGCGGGATGCAGCAGCCGGACATGAGAGGGCCACCCCGTGGAGGTGGGATGCAGCAGCCGAATATGCCACCAAACATGGGTGGAGTGCCTCCCAATAACTACGGAATGCCAAACAACGCACGTAATTTCCAATACAATGGTGGTGGACAGAACAATGGAGACACGCCTTACCAAACAGGTCCAGGGCCAAACCAGAGCTACGCTCCTAATACATCTGATGGGAACTCCTATCAGAATCCAAACATGGCTGGTAGAGATATGTCCAATTCTAATTACCGATGAGCAGCTGTAGATACGTGTTTAGTTGTCAATGCTAGATGGTTTATCTTCACAAAGTAATGTCTTAATGGAGTTTTGATAGCACGTTGTCCTCATAATAGTTGGAAGTACGAATTTTACATATTGAGTTATGCAGTGCCAAAAATTATTGGGATTTCCTTTTATT
CDS Sequence
- >Solyc12g014230.2.1
ATGGCGTCTCGCTCTTTGCTCAATGCATTCAAACGCTCCTGCAACTCATTTTCTCTCTCTACAACTCCGAGCACTTACTCACTCCACCTTCTCCGACCACTTCATGCCGTTGCGGCCAACCTACGAAATGTCTCTCCGGCACCGACGCCGTTTTCTCGAGGTTTTGCCACTCGTCAAACGTCGTCGTCACTGAATGATCCAAATCCTAACTGGTCCAATCGACCTCCGAAGGAAACGATTTTGCTTGACGGCTGTGATTTTGAGCACTGGCTTGTTGTGATGGAGAAGCCTGAAGGTGATCCTACCAGAGATGAAATTATTGATAGCTACATCAAAACACTTGCTACGATTGTTGGAAGTGAGGAGGAAGCACGGATGAAGATTTATTCCGTCTCAACTAGACATTACTTTGCTTTTGGTGCCCTTGTATCTGAAGAGCTTTCTTATAAACTAAAAGAGCTGCCTAAGGTTCGTTGGGTGCTTCCTGATTCTTATCTCGATGTTAGAAATAAAGATTATGGAGGGGAACCTTTTATCAATGGACAGGCTGTACCATATGACCCGAAATACCATGAGGAATGGGTGAGAAACAATGCTCGTGCTAATGAGAGAAACAGGCGCAATGACCGACCTCGTAATTTTGATAGGTCCAGAAACTTTGAGAGAAGAAGAGAGATGCAGAATCAACCCAGTCAGAACCCTGGATCTAACATGGCAGCAGGGGGGCCTCCCAACATGGGCGGCATGCAGCAACCTAACATGGGTGGAATGCACCAGCAGCAAGGCATGGGAGGGCCACCACCTCATGCAGGCGGGATGCACCAGCAGCAAGGCTATGGAGGGCCACCACCTCATGCAGGCGGTATGCAGCAGCCGGACATGAGAGGACCACCCATGCAGCAGCAAGGCTATGGAGGGCCACCACCTCATGCTGGCGGGATGCAGCAGCCGGACATGAGAGGGCCACCCATGCAGCAGCAAGGCTATGGAGGGCCACCACCTCATGCAGGCGGGATGCAGCAGCCGGACATGAGAGGGCCACCCCGTGGAGGTGGGATGCAGCAGCCGAATATGCCACCAAACATGGGTGGAGTGCCTCCCAATAACTACGGAATGCCAAACAACGCACGTAATTTCCAATACAATGGTGGTGGACAGAACAATGGAGACACGCCTTACCAAACAGGTCCAGGGCCAAACCAGAGCTACGCTCCTAATACATCTGATGGGAACTCCTATCAGAATCCAAACATGGCTGGTAGAGATATGTCCAATTCTAATTACCGATGA
Protein Sequence
- >Solyc12g014230.2.1
MASRSLLNAFKRSCNSFSLSTTPSTYSLHLLRPLHAVAANLRNVSPAPTPFSRGFATRQTSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSYIKTLATIVGSEEEARMKIYSVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRNFDRSRNFERRREMQNQPSQNPGSNMAAGGPPNMGGMQQPNMGGMHQQQGMGGPPPHAGGMHQQQGYGGPPPHAGGMQQPDMRGPPMQQQGYGGPPPHAGGMQQPDMRGPPMQQQGYGGPPPHAGGMQQPDMRGPPRGGGMQQPNMPPNMGGVPPNNYGMPNNARNFQYNGGGQNNGDTPYQTGPGPNQSYAPNTSDGNSYQNPNMAGRDMSNSNYR*