Gene Details:
- Gene ID: Solyc11g068740
- Gene Symbol: SlMBD5
- Gene Name: methyl CpG binding domain protein 5
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- Tomato MBD5, a methyl CpG binding domain protein, physically interacting with UV-damaged DNA binding protein-1, functions in multiple processes.
- SlMBD5 was shown to target to nucleus and dimerizes via its MBD motif.
- Overexpressing SlMBD5 resulted in diverse developmental alterations including darker green fruits with increased plastid level and elevated pigmentation, as well as enhanced expression of SlGLK2, a key regulator of plastid biogenesis.
- SlMBD5 interacts with tomato UV-damaged DNA binding protein 1 (DDB1) in vitro and in vivo.
Function-related keywords:
- nucleus , plastid , pigmentation , protein
Literature:
- Tomato MBD5, a methyl CpG binding domain protein, physically interacting with UV-damaged DNA binding protein-1, functions in multiple processes. DOI: 10.1111/nph.13745 ; PMID: 26551231
Related News:
Gene Resources:
Orthologs:
Sequences:
cDNA Sequence
- >Solyc11g068740.2.1
ATTTTACTTTATTCGAATTGATTTTGTTTTCTTTCTATCTAGTGACTCTCTCAACGCTTCCGATGACTGAGGCCGCCTCCGTATCGTCCATCCCGCCGGCAACCGTTACCGGCGACGACTTCCGTGATGACTCTCTACCGCGGGATCCACTGTTACAGTCCGGAACCTACATCGACGCTGAGTCGAATGTTGACACTACACCGAACAAAGGCGTAAGGCCAAATGCAGGTAATGTGCCCGATCTAACTCCGGCGCCGGCGGAGGGGACTCAGGAGATTCAGTCGGTGGATACGGTGGCGCAGACGGTGACGCCTCTGCGTTATGGGAGTAGATCGGCAGAGGTGAGTGTAGAGAGACCGACCTGGTTGCCGGAGAGTTGGAGGTTCGAAGCGAAAGTTCGTACCTCTGGCGCTACTGCTGGAACTGTTGATAGATACTATTATGAACCAGTCACCGGGAGTAAATTCCGGTCAAAGACTGAGGTGCTTTATTTCCTAGAAACTGGTGGCAAGCGCAAGAAGGCAATTACTGGAACTACTGGCAGTGGCACTGATGCTACACCATCTGAGACTCCCCCAATCAAAAAACAGAAGAAGAGTATCTCGAAAACAAAGAAGGTTACTTCTTTCTACTTTGATTCTGGGAATCCGCCCCAGAGCGTGTGCTGGGTTCAAACAGATACTTCCGCAGACACTTGGACACCTTCATGTAATGGCAGCGTGGTTCCTGGAACCCGGAAGCAAGAATGGGATGCTGTGTTCTTAAGTGTATCAAAGCTGAAGCGAAGGAACACACAAACAGGGAGATAGGCGGCTCTAATGTGTACTATACACTAACAGTGAACAAACCTTTTTCTGGATCTATCTAGACTAGATAGTATGTCAAATGCCCGCCTGAATTTGCCTTACTTCTTTTGGTTTTAGCTAAGGGCTCTCATAGGTGTTGATAACTTCTTGTTTTGGCCTCATGGAATAGGCAAAAGTTGCTTCACCTATATCTGTTCATCATGTAATCTTATGGTATTTTGGAATTAATTAGTTTCAAGACCTTCCGTATTAAGTAAAATACCAATGAATTTGAAGCATTTTAGTAGGATTGACATGATATTGTTGCAATTGTGAAAATATTGTAGTTATTGAGTAT
CDS Sequence
- >Solyc11g068740.2.1
ATGACTGAGGCCGCCTCCGTATCGTCCATCCCGCCGGCAACCGTTACCGGCGACGACTTCCGTGATGACTCTCTACCGCGGGATCCACTGTTACAGTCCGGAACCTACATCGACGCTGAGTCGAATGTTGACACTACACCGAACAAAGGCGTAAGGCCAAATGCAGGTAATGTGCCCGATCTAACTCCGGCGCCGGCGGAGGGGACTCAGGAGATTCAGTCGGTGGATACGGTGGCGCAGACGGTGACGCCTCTGCGTTATGGGAGTAGATCGGCAGAGGTGAGTGTAGAGAGACCGACCTGGTTGCCGGAGAGTTGGAGGTTCGAAGCGAAAGTTCGTACCTCTGGCGCTACTGCTGGAACTGTTGATAGATACTATTATGAACCAGTCACCGGGAGTAAATTCCGGTCAAAGACTGAGGTGCTTTATTTCCTAGAAACTGGTGGCAAGCGCAAGAAGGCAATTACTGGAACTACTGGCAGTGGCACTGATGCTACACCATCTGAGACTCCCCCAATCAAAAAACAGAAGAAGAGTATCTCGAAAACAAAGAAGGTTACTTCTTTCTACTTTGATTCTGGGAATCCGCCCCAGAGCGTGTGCTGGGTTCAAACAGATACTTCCGCAGACACTTGGACACCTTCATGTAATGGCAGCGTGGTTCCTGGAACCCGGAAGCAAGAATGGGATGCTGTGTTCTTAAGTGTATCAAAGCTGAAGCGAAGGAACACACAAACAGGGAGATAG
Protein Sequence
- >Solyc11g068740.2.1
MTEAASVSSIPPATVTGDDFRDDSLPRDPLLQSGTYIDAESNVDTTPNKGVRPNAGNVPDLTPAPAEGTQEIQSVDTVAQTVTPLRYGSRSAEVSVERPTWLPESWRFEAKVRTSGATAGTVDRYYYEPVTGSKFRSKTEVLYFLETGGKRKKAITGTTGSGTDATPSETPPIKKQKKSISKTKKVTSFYFDSGNPPQSVCWVQTDTSADTWTPSCNGSVVPGTRKQEWDAVFLSVSKLKRRNTQTGR*