Gene Details:
- Gene ID: Solyc06g036170
- Gene Symbol: SlGRAS9
- Gene Name: GRAS transcription factor 9
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- The SlGRAS9-SlZHD17 transcriptional cascade regulates chlorophyll and carbohydrate metabolism contributing to fruit quality traits in tomato.
- Knockout or knockdown of SlGRAS9 or SlZHD17 resulted in marked increase in chlorophyll content, reprogrammed chloroplast biogenesis and enhanced accumulation of starch and soluble sugars.
- Combined genome-wide transcriptomic profiling and promoter-binding experiments unveiled a complex mechanism in which the SlGRAS9/SlZHD17 regulatory module modulates the expression of chloroplast and sugar metabolism either via a sequential transcriptional cascade or through binding of both TFs to the same gene promoters, or, alternatively, via parallel pathways where each of the TFs act on different target genes.
- Both SlGRAS9 and SlZHD17 can also directly bind the promoter of SlPOR-B to regulate its expression.
Function-related keywords:
- chloroplast , starch , quality , sugar , chlorophyll , chlorophyll-content , chlorophyll-biogenesis , chloroplast-biogenesis , starch-accumulation , carbohydrate-metabolism
Literature:
- The SlGRAS9-SlZHD17 transcriptional cascade regulates chlorophyll and carbohydrate metabolism contributing to fruit quality traits in tomato. DOI: 10.1111/nph.19530 ; PMID: 38263687
- Genome-wide identification, phylogeny and expression analysis of GRAS gene family in tomato. DOI: 10.1186/s12870-015-0590-6 ; PMID: 26302743
Related News:
Gene Resources:
- NCBI ID: 100037501
- UniProt accessions: A0A3Q7GUI2
Orthologs:
Sequences:
cDNA Sequence
- >Solyc06g036170.1.1
ATGTCCTCGGATTTCTCCGGCGGAGTTCCAGACTTTCACGGCGGCGCCGGTAGATCCAGCTTGATTCCGATGAACAACTCCCAGCCACAAATTCAATTAACCCAACGCCCTGACGGAGTTTCTCAGAATCTCCACCGGAGACCTATGTTCATCGGGAAACGGTCACTCGCAGCCTTTCAACAGCAGCAACAGTTTCAGTTTCTACAACAACAACAGCAGCAACAAGGTTTGGGATTTTATCTACGTAACGTGAAGCCTAGAAATTACCAGCAGGCATCTCCAATTTCTCCTCTAGATTACTCTGTTTCTTCCTCGTTGATTTCATCTGAATTTTCTCCGATGACTCCACGCCATCCTCTCCCGATTTCCACGGCGAACACGAACGGGGTTTTATCTTCTGGTAACCCGAATTGTTCAGCAGTTGCTTCTTACCTAAATCAGGTACAGAACAGTTTATACCAGGAATCAGAGGAAAAAATGATGAATCGACTGCATGAGTTAGAGAAACAGCTCCTAGAAGACAACAATGAGGAGGAAGAAGATACAGTCTCTGTTGTGACTAACAACGACGAGTGGTCGGAAACAATAAAGAATCTGATTACTCCGACTAGTAACCACTTATCCCCGGCATCATCTACGTCTTCATGTTCTTCTTCTATGGAATCTCCGCCAGTATCTTCTCCCAGGCAGTCTATTGTCGAAGCTGCTACCGCAATAATCGACGGAAAAACCAATGTTGCAGTACAGATCCTCACGCGCCTCGCACAGGTAGCTGATGTTAGAGGGTCTTCCGAACAGCGGCTGACGGCGTACATGGTTTCAGCACTCCGATCGCGCGTGAACTCCACGGAGTACCCACCGCCCGTGATGGAGCTGCGTAGCAAAGAGCACGCAGTTTCAGCTCAAAACCTCTACGAGATATCCCCGTGTTTCAAGCTAGGATTTATGGCAGCTAATTTCGCCATTGTTGAAGCTGTAGCTGATCATCCCTCAAACAAAATTCACGTCATTGATTTCGACATAGGACAAGGTGGACAATACTTGCATTTACTACACGCGCTAGCTTCCAAGAAAACAGATTATCCCATCAGCTTAAGAATCACGGCGATCACAACAGAGTTCACGGTCAGAGCTGATCACAGTTTAAAATCCATTGAAGATGATCTGAGAAGTCTAGCAAACAAAATCGGTATTTCCTTGATTTTCAAAGTAATTTCACGTACAATCACCGATTTGAGTAGGGGAAAATTAGGGATTGAACACGACGAAGCTTTAGCAGTGAATTTCGCATACAGATTATATAGATTACCCGACGAGAGCGTAACAACAGAGAATCTAAGAGACGAGCTTCTCCGGCGAGTGAAGGGGTTATCACCAAAGGTGGTGACATTAGTAGAGCAAGAGTTGAACGGGAACACGGCGGCGTTTGTGGCGCGTGTAAACGAGGCGTGTGGATATTACGGAGCATTGTTGGATTCACTGGATGCAACTGTATCAAGAGAGGAAACGGGTCGGGTCAAGATCGAAGAAGGGCTGAGTCGTAAATTAACAAACTCGGTAGCGTGTGAAGGTAGGGATCGTTTGGAGAGATGCGAGGTGTTTGGTAAATGGAGGGCCCGAATGAGTATGGCTGGGTTCGGGCCGAGGCCCATGAGTCAACAAATTGCTGATTCACTGCTTAAGAGGCTTAACTCGGGCCCACGTGGCAATCCAGGATTCAATGTGAATGAACAAAGTGGGGGTATTAGGTTTGGATGGATGGGAAAAACCCTCACCGTTGCTTCTGCTTGGTGTTAA
CDS Sequence
- >Solyc06g036170.1.1
ATGTCCTCGGATTTCTCCGGCGGAGTTCCAGACTTTCACGGCGGCGCCGGTAGATCCAGCTTGATTCCGATGAACAACTCCCAGCCACAAATTCAATTAACCCAACGCCCTGACGGAGTTTCTCAGAATCTCCACCGGAGACCTATGTTCATCGGGAAACGGTCACTCGCAGCCTTTCAACAGCAGCAACAGTTTCAGTTTCTACAACAACAACAGCAGCAACAAGGTTTGGGATTTTATCTACGTAACGTGAAGCCTAGAAATTACCAGCAGGCATCTCCAATTTCTCCTCTAGATTACTCTGTTTCTTCCTCGTTGATTTCATCTGAATTTTCTCCGATGACTCCACGCCATCCTCTCCCGATTTCCACGGCGAACACGAACGGGGTTTTATCTTCTGGTAACCCGAATTGTTCAGCAGTTGCTTCTTACCTAAATCAGGTACAGAACAGTTTATACCAGGAATCAGAGGAAAAAATGATGAATCGACTGCATGAGTTAGAGAAACAGCTCCTAGAAGACAACAATGAGGAGGAAGAAGATACAGTCTCTGTTGTGACTAACAACGACGAGTGGTCGGAAACAATAAAGAATCTGATTACTCCGACTAGTAACCACTTATCCCCGGCATCATCTACGTCTTCATGTTCTTCTTCTATGGAATCTCCGCCAGTATCTTCTCCCAGGCAGTCTATTGTCGAAGCTGCTACCGCAATAATCGACGGAAAAACCAATGTTGCAGTACAGATCCTCACGCGCCTCGCACAGGTAGCTGATGTTAGAGGGTCTTCCGAACAGCGGCTGACGGCGTACATGGTTTCAGCACTCCGATCGCGCGTGAACTCCACGGAGTACCCACCGCCCGTGATGGAGCTGCGTAGCAAAGAGCACGCAGTTTCAGCTCAAAACCTCTACGAGATATCCCCGTGTTTCAAGCTAGGATTTATGGCAGCTAATTTCGCCATTGTTGAAGCTGTAGCTGATCATCCCTCAAACAAAATTCACGTCATTGATTTCGACATAGGACAAGGTGGACAATACTTGCATTTACTACACGCGCTAGCTTCCAAGAAAACAGATTATCCCATCAGCTTAAGAATCACGGCGATCACAACAGAGTTCACGGTCAGAGCTGATCACAGTTTAAAATCCATTGAAGATGATCTGAGAAGTCTAGCAAACAAAATCGGTATTTCCTTGATTTTCAAAGTAATTTCACGTACAATCACCGATTTGAGTAGGGGAAAATTAGGGATTGAACACGACGAAGCTTTAGCAGTGAATTTCGCATACAGATTATATAGATTACCCGACGAGAGCGTAACAACAGAGAATCTAAGAGACGAGCTTCTCCGGCGAGTGAAGGGGTTATCACCAAAGGTGGTGACATTAGTAGAGCAAGAGTTGAACGGGAACACGGCGGCGTTTGTGGCGCGTGTAAACGAGGCGTGTGGATATTACGGAGCATTGTTGGATTCACTGGATGCAACTGTATCAAGAGAGGAAACGGGTCGGGTCAAGATCGAAGAAGGGCTGAGTCGTAAATTAACAAACTCGGTAGCGTGTGAAGGTAGGGATCGTTTGGAGAGATGCGAGGTGTTTGGTAAATGGAGGGCCCGAATGAGTATGGCTGGGTTCGGGCCGAGGCCCATGAGTCAACAAATTGCTGATTCACTGCTTAAGAGGCTTAACTCGGGCCCACGTGGCAATCCAGGATTCAATGTGAATGAACAAAGTGGGGGTATTAGGTTTGGATGGATGGGAAAAACCCTCACCGTTGCTTCTGCTTGGTGTTAA
Protein Sequence
- >Solyc06g036170.1.1
MSSDFSGGVPDFHGGAGRSSLIPMNNSQPQIQLTQRPDGVSQNLHRRPMFIGKRSLAAFQQQQQFQFLQQQQQQQGLGFYLRNVKPRNYQQASPISPLDYSVSSSLISSEFSPMTPRHPLPISTANTNGVLSSGNPNCSAVASYLNQVQNSLYQESEEKMMNRLHELEKQLLEDNNEEEEDTVSVVTNNDEWSETIKNLITPTSNHLSPASSTSSCSSSMESPPVSSPRQSIVEAATAIIDGKTNVAVQILTRLAQVADVRGSSEQRLTAYMVSALRSRVNSTEYPPPVMELRSKEHAVSAQNLYEISPCFKLGFMAANFAIVEAVADHPSNKIHVIDFDIGQGGQYLHLLHALASKKTDYPISLRITAITTEFTVRADHSLKSIEDDLRSLANKIGISLIFKVISRTITDLSRGKLGIEHDEALAVNFAYRLYRLPDESVTTENLRDELLRRVKGLSPKVVTLVEQELNGNTAAFVARVNEACGYYGALLDSLDATVSREETGRVKIEEGLSRKLTNSVACEGRDRLERCEVFGKWRARMSMAGFGPRPMSQQIADSLLKRLNSGPRGNPGFNVNEQSGGIRFGWMGKTLTVASAWC*