Information report for SlGRAS9
Gene Details
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Functional Descriptions
- The SlGRAS9-SlZHD17 transcriptional cascade regulates chlorophyll and carbohydrate metabolism contributing to fruit quality traits in tomato.
- Knockout or knockdown of SlGRAS9 or SlZHD17 resulted in marked increase in chlorophyll content, reprogrammed chloroplast biogenesis and enhanced accumulation of starch and soluble sugars.
- Combined genome-wide transcriptomic profiling and promoter-binding experiments unveiled a complex mechanism in which the SlGRAS9/SlZHD17 regulatory module modulates the expression of chloroplast and sugar metabolism either via a sequential transcriptional cascade or through binding of both TFs to the same gene promoters, or, alternatively, via parallel pathways where each of the TFs act on different target genes.
- Both SlGRAS9 and SlZHD17 can also directly bind the promoter of SlPOR-B to regulate its expression.
Functional Keywords
Literature and News
- The SlGRAS9-SlZHD17 transcriptional cascade regulates chlorophyll and carbohydrate metabolism contributing to fruit quality traits in tomato. DOI: 10.1111/nph.19530 ; PMID: 38263687
- Genome-wide identification, phylogeny and expression analysis of GRAS gene family in tomato. DOI: 10.1186/s12870-015-0590-6 ; PMID: 26302743
Gene Resources
- NCBI ID: 100037501
- UniProt accessions: A0A3Q7GUI2
- AlphaFoldDB: A0A3Q7GUI2
- EnsemblPlants: Solyc06g036170.1.1
- Gramene: Solyc06g036170.1.1
- KEGG: sly:100037501
- GO: GO:0003700 , GO:0005634 , GO:0006355 , GO:0043565
- OMA: LTDCMVL
- InterPro: IPR005202
- PANTHER: PTHR31636
- PROSITE: PS50985
- OrthoDB: A0A3Q7GUI2
- Pfam: PF03514
- SMR: A0A3Q7GUI2
- STRING: 4081.A0A3Q7GUI2
Sequences
cDNA Sequence
- >Solyc06g036170.1.1
ATGTCCTCGGATTTCTCCGGCGGAGTTCCAGACTTTCACGGCGGCGCCGGTAGATCCAGCTTGATTCCGATGAACAACTCCCAGCCACAAATTCAATTAACCCAACGCCCTGACGGAGTTTCTCAGAATCTCCACCGGAGACCTATGTTCATCGGGAAACGGTCACTCGCAGCCTTTCAACAGCAGCAACAGTTTCAGTTTCTACAACAACAACAGCAGCAACAAGGTTTGGGATTTTATCTACGTAACGTGAAGCCTAGAAATTACCAGCAGGCATCTCCAATTTCTCCTCTAGATTACTCTGTTTCTTCCTCGTTGATTTCATCTGAATTTTCTCCGATGACTCCACGCCATCCTCTCCCGATTTCCACGGCGAACACGAACGGGGTTTTATCTTCTGGTAACCCGAATTGTTCAGCAGTTGCTTCTTACCTAAATCAGGTACAGAACAGTTTATACCAGGAATCAGAGGAAAAAATGATGAATCGACTGCATGAGTTAGAGAAACAGCTCCTAGAAGACAACAATGAGGAGGAAGAAGATACAGTCTCTGTTGTGACTAACAACGACGAGTGGTCGGAAACAATAAAGAATCTGATTACTCCGACTAGTAACCACTTATCCCCGGCATCATCTACGTCTTCATGTTCTTCTTCTATGGAATCTCCGCCAGTATCTTCTCCCAGGCAGTCTATTGTCGAAGCTGCTACCGCAATAATCGACGGAAAAACCAATGTTGCAGTACAGATCCTCACGCGCCTCGCACAGGTAGCTGATGTTAGAGGGTCTTCCGAACAGCGGCTGACGGCGTACATGGTTTCAGCACTCCGATCGCGCGTGAACTCCACGGAGTACCCACCGCCCGTGATGGAGCTGCGTAGCAAAGAGCACGCAGTTTCAGCTCAAAACCTCTACGAGATATCCCCGTGTTTCAAGCTAGGATTTATGGCAGCTAATTTCGCCATTGTTGAAGCTGTAGCTGATCATCCCTCAAACAAAATTCACGTCATTGATTTCGACATAGGACAAGGTGGACAATACTTGCATTTACTACACGCGCTAGCTTCCAAGAAAACAGATTATCCCATCAGCTTAAGAATCACGGCGATCACAACAGAGTTCACGGTCAGAGCTGATCACAGTTTAAAATCCATTGAAGATGATCTGAGAAGTCTAGCAAACAAAATCGGTATTTCCTTGATTTTCAAAGTAATTTCACGTACAATCACCGATTTGAGTAGGGGAAAATTAGGGATTGAACACGACGAAGCTTTAGCAGTGAATTTCGCATACAGATTATATAGATTACCCGACGAGAGCGTAACAACAGAGAATCTAAGAGACGAGCTTCTCCGGCGAGTGAAGGGGTTATCACCAAAGGTGGTGACATTAGTAGAGCAAGAGTTGAACGGGAACACGGCGGCGTTTGTGGCGCGTGTAAACGAGGCGTGTGGATATTACGGAGCATTGTTGGATTCACTGGATGCAACTGTATCAAGAGAGGAAACGGGTCGGGTCAAGATCGAAGAAGGGCTGAGTCGTAAATTAACAAACTCGGTAGCGTGTGAAGGTAGGGATCGTTTGGAGAGATGCGAGGTGTTTGGTAAATGGAGGGCCCGAATGAGTATGGCTGGGTTCGGGCCGAGGCCCATGAGTCAACAAATTGCTGATTCACTGCTTAAGAGGCTTAACTCGGGCCCACGTGGCAATCCAGGATTCAATGTGAATGAACAAAGTGGGGGTATTAGGTTTGGATGGATGGGAAAAACCCTCACCGTTGCTTCTGCTTGGTGTTAA
CDS Sequence
- >Solyc06g036170.1.1
ATGTCCTCGGATTTCTCCGGCGGAGTTCCAGACTTTCACGGCGGCGCCGGTAGATCCAGCTTGATTCCGATGAACAACTCCCAGCCACAAATTCAATTAACCCAACGCCCTGACGGAGTTTCTCAGAATCTCCACCGGAGACCTATGTTCATCGGGAAACGGTCACTCGCAGCCTTTCAACAGCAGCAACAGTTTCAGTTTCTACAACAACAACAGCAGCAACAAGGTTTGGGATTTTATCTACGTAACGTGAAGCCTAGAAATTACCAGCAGGCATCTCCAATTTCTCCTCTAGATTACTCTGTTTCTTCCTCGTTGATTTCATCTGAATTTTCTCCGATGACTCCACGCCATCCTCTCCCGATTTCCACGGCGAACACGAACGGGGTTTTATCTTCTGGTAACCCGAATTGTTCAGCAGTTGCTTCTTACCTAAATCAGGTACAGAACAGTTTATACCAGGAATCAGAGGAAAAAATGATGAATCGACTGCATGAGTTAGAGAAACAGCTCCTAGAAGACAACAATGAGGAGGAAGAAGATACAGTCTCTGTTGTGACTAACAACGACGAGTGGTCGGAAACAATAAAGAATCTGATTACTCCGACTAGTAACCACTTATCCCCGGCATCATCTACGTCTTCATGTTCTTCTTCTATGGAATCTCCGCCAGTATCTTCTCCCAGGCAGTCTATTGTCGAAGCTGCTACCGCAATAATCGACGGAAAAACCAATGTTGCAGTACAGATCCTCACGCGCCTCGCACAGGTAGCTGATGTTAGAGGGTCTTCCGAACAGCGGCTGACGGCGTACATGGTTTCAGCACTCCGATCGCGCGTGAACTCCACGGAGTACCCACCGCCCGTGATGGAGCTGCGTAGCAAAGAGCACGCAGTTTCAGCTCAAAACCTCTACGAGATATCCCCGTGTTTCAAGCTAGGATTTATGGCAGCTAATTTCGCCATTGTTGAAGCTGTAGCTGATCATCCCTCAAACAAAATTCACGTCATTGATTTCGACATAGGACAAGGTGGACAATACTTGCATTTACTACACGCGCTAGCTTCCAAGAAAACAGATTATCCCATCAGCTTAAGAATCACGGCGATCACAACAGAGTTCACGGTCAGAGCTGATCACAGTTTAAAATCCATTGAAGATGATCTGAGAAGTCTAGCAAACAAAATCGGTATTTCCTTGATTTTCAAAGTAATTTCACGTACAATCACCGATTTGAGTAGGGGAAAATTAGGGATTGAACACGACGAAGCTTTAGCAGTGAATTTCGCATACAGATTATATAGATTACCCGACGAGAGCGTAACAACAGAGAATCTAAGAGACGAGCTTCTCCGGCGAGTGAAGGGGTTATCACCAAAGGTGGTGACATTAGTAGAGCAAGAGTTGAACGGGAACACGGCGGCGTTTGTGGCGCGTGTAAACGAGGCGTGTGGATATTACGGAGCATTGTTGGATTCACTGGATGCAACTGTATCAAGAGAGGAAACGGGTCGGGTCAAGATCGAAGAAGGGCTGAGTCGTAAATTAACAAACTCGGTAGCGTGTGAAGGTAGGGATCGTTTGGAGAGATGCGAGGTGTTTGGTAAATGGAGGGCCCGAATGAGTATGGCTGGGTTCGGGCCGAGGCCCATGAGTCAACAAATTGCTGATTCACTGCTTAAGAGGCTTAACTCGGGCCCACGTGGCAATCCAGGATTCAATGTGAATGAACAAAGTGGGGGTATTAGGTTTGGATGGATGGGAAAAACCCTCACCGTTGCTTCTGCTTGGTGTTAA
Protein Sequence
- >Solyc06g036170.1.1
MSSDFSGGVPDFHGGAGRSSLIPMNNSQPQIQLTQRPDGVSQNLHRRPMFIGKRSLAAFQQQQQFQFLQQQQQQQGLGFYLRNVKPRNYQQASPISPLDYSVSSSLISSEFSPMTPRHPLPISTANTNGVLSSGNPNCSAVASYLNQVQNSLYQESEEKMMNRLHELEKQLLEDNNEEEEDTVSVVTNNDEWSETIKNLITPTSNHLSPASSTSSCSSSMESPPVSSPRQSIVEAATAIIDGKTNVAVQILTRLAQVADVRGSSEQRLTAYMVSALRSRVNSTEYPPPVMELRSKEHAVSAQNLYEISPCFKLGFMAANFAIVEAVADHPSNKIHVIDFDIGQGGQYLHLLHALASKKTDYPISLRITAITTEFTVRADHSLKSIEDDLRSLANKIGISLIFKVISRTITDLSRGKLGIEHDEALAVNFAYRLYRLPDESVTTENLRDELLRRVKGLSPKVVTLVEQELNGNTAAFVARVNEACGYYGALLDSLDATVSREETGRVKIEEGLSRKLTNSVACEGRDRLERCEVFGKWRARMSMAGFGPRPMSQQIADSLLKRLNSGPRGNPGFNVNEQSGGIRFGWMGKTLTVASAWC*