Gene Details:
- Gene ID: Solyc06g008490
- Gene Symbol: SlJMJ6
- Gene Name: JmjC domain-containing protein
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- Found that the tomato (Solanum lycopersicum) SlJMJ6 encodes a histone lysine demethylase that specifically demethylates H3K27 methylation.
- Overexpression of SlJMJ6 accelerates tomato fruit ripening, which is associated with the upregulated expression of a large number of ripening-related genes.
- Numerous SlJMJ6-regulated genes are involved in transcription regulation, ethylene biosynthesis, cell wall degradation and hormone signaling.
- Our results demonstrate that SlJMJ6 is a ripening-prompting H3K27me3 demethylase that activates the expression of the ripening-related genes by modulating H3K27me3, thereby facilitating tomato fruit ripening.
Function-related keywords:
Literature:
- Histone demethylase SlJMJ6 promotes fruit ripening by removing H3K27 methylation of ripening-related genes in tomato. DOI: 10.1111/nph.16590 ; PMID: 32255501
Related News:
Gene Resources:
- NCBI ID: 101244589
- UniProt accessions: A0A3Q7GSF4
Orthologs:
Sequences:
cDNA Sequence
- >Solyc06g008490.3.1
AGATTATTTCAGTCGAATTATGAAGAAGAATCTTGAAAAGAAAAAAATCCTCCATGGTTAATTCCTTAAAGTTTAGTCTTCAAGTACGAGGTTTATGAGTTTTCTTTCCTGTACAAACCCTTCTCTCCATTTTCAAATCAAGTTCTGCTGATACCCTTTTGACCCTGCAACTCCAGAATTACTAACACCTTTTTCTAGTGCTATTTTGTCTTGGTGTTGATGGGGGCCAAGCGCATCAGATTACAGGGTGAATGTGATGACAGGAAAAGATTTTCAGTTCCACCTGGTTTTGAATCACTAACGTCTTTCACACTACAGAAGGTAGAAAATAATGAGGAAGCCTGTAACTCTGTGGCTGTTGGGAATGAGTCTGAGCAAGGTCCTGTCCAGGTTGCTTCTACAGCCACAATTATTAGCACAGGAAAGCTTAAGAGTTCTGTTAGGCGTAGGCCTTGGATACTTGATGATCATGTTGATCACATGGAAGAGAATTTTGAATGTGAATCTGATAAGGGTTCGTCTTCACACGCTTATCTTCCCAGAGGAGTGATCCGTGGATGTTCCAGTTGTCACAACTGCCAGAAGGTTATTGCAAGAAGTCGTCCGGAATCGGCACGGATCCCTTCACTTGATGAAGCTCCTGTACTCCATCCTACTGAAGAGGAATTTAAAGATACTCTCAAGTACGTTGCAAGCATCCTTCCACATGTCAAGCAATATGGAGTATGCCGTATTGTTCCTCCCTCTTCCTGGAGACCACCTTGCCGCATTGAAGAAGAGGACACGAGGTGTGGAGTCAACACTCGTATCCAGCGCATTAGTGACCTCCAGAGTCTGTTTTTAAAGATGAGACTTGAGGGAGCCCATAAGAAGACTAATAATAGGCGGCAGAAAATCCCAAGTATGAAGCCAGAGTTTGGACACAGCGTGGAACGTAAAGAATTTGGTTGTTGTGATGAACACTTTGAATTTGAAAGTGGACCAAAGTTTAAGTTGAAGTCTTTCAAGAATTACGCTGATCATTTCAAGAGGCAGTACTTTGTCAAGGAAGATCAGATCACAGCTTCAAACTTCAATTCAGATGCAATGCAGATGCTGTCAGAACCATCTATTCCTGATATTGAAGGGGAATACTGGAGAATTATTGAGAATCCAACTGAAGAAATTGAGGTGCTCCATGGGAATACTACGGAAACTAGTGCAAGCCAAAGTGGTTTTCCACTTAAAACCAATCCACGGGATGTAACTGCATGTCCAGAATATGTGGAATCAGGTTGGAACTTGAACAATACCCCTAAGCTTCAAGATTCTCTTCTCCGTTTTGAGAGTTGTAACAGTTCCTCTATTTTGCTTCCCCGGCTCTCCTTTGGAATGTGTTTTTCGTCTAATCAGTGGAGAATTGAAGAGCACCACTTATATTTGCTATCCTACATACATTTTGGCGCTCCAAGAATATTTTATGGGGTTCCCGGGAGTCATCGTTGCAAGTTTGAGGAAGCTGTCAAGAAGCATCTCCCACCGTTGTCAGCACATCCTTGTTTGCTTCACAACCTTGCCACACAATTCTCTCCTTCTATATTGACTTCAGAGGGTATACCTGTTTATCGTTGTGTGCAAAATCCAAAGGAGTTTGTTCTCATACTCCCTGGAGCATACCATGCAGAGTTTGATAGTGGATTTAATTGTTATGAAGCAGTAAATTTCTCTCCCTTTGACTGGTTACCACATGGTCAGAACGCTGTGGAACTGTACCGTGAGCAGGACAGAAAGACATCAATCTCCCATGATAAACTGTTGCTTGAAGCAGCTGCAGAAGCAATTAGGACCTTAGGAGAACTTGCACTGCGCAACAACAATTCTTTTGATGATTCAAAATGGAGAACAGTCTGTCGGAACTATGGTTATTTGACAAAAGCACTTAAGACACGGGTTGCCACCGAAGCGAGAAGACGGAAATATCTGTTTGCTTCTCTTGAATCACGAAAGATGGAGGATGACTTTTGTGCCACCACCAAACAGGAATGTGTTGCATGCTTCTGTGACCTATACCTTTCTGCCATTGGCTGCAAATGTTCTGCACATAAATATACTTGTCTTCTTCATGCCAAACAACTATGTGATTGTGCTTGGAGCGAGAGGTATTTGCTTATACGGTATGAAATAGATGAGTTGAACATCATGGTTGAAGATTTGGATCGAAAAGTAAGTGCAGTTCATAACAGGGCAAAAGAAAAACTTGGATTGCCTGTATCCGATGTTTCTAAAGATGCTATCAATGAAGTAGGTATGGAAACAATGAAGCATAAACCTGTAATTCCTAATGTGGAACTCTCCGAGAGTACATCTCACCGTTCAACCTCCAGACAAGCATCAGATATTCAACAGTACAGGAATGTAGATGTTTTCTTTGCACCTTCAGTTGTTCCAAGTTCAACAACAATGAATTTGAACCATCGATCACAATTGAAAGAAAACGTTCATGATGAGAATAAAGTTCTATTGCCAAAAGTATCACAGAATACTGCTGTTGGTGAAAATATTGCAACTTCTTCCAGTACAGTTCTCAAGAAACATCTTGCACAGGGGTCTTCATCGACAGTTAGAGATGTAATTATTCTCAGTGATGATGAAGATTAGCAAACCCCCATACCATATCACAAACGGTAACAAGCATTTATATGTCAGTTCTCTGCTGTAAGTTTGCTGATTGTAAAACTTGAATTATGTAACATGACTGGGAAATGCTCTTTCAACTCAATCTTGGCACTTTGTTTCGTGTATATCTGTTCTGGTACTCTTTTTGTTTAATCGAATCAACAGCTATTGACATTTA
CDS Sequence
- >Solyc06g008490.3.1
ATGGGGGCCAAGCGCATCAGATTACAGGGTGAATGTGATGACAGGAAAAGATTTTCAGTTCCACCTGGTTTTGAATCACTAACGTCTTTCACACTACAGAAGGTAGAAAATAATGAGGAAGCCTGTAACTCTGTGGCTGTTGGGAATGAGTCTGAGCAAGGTCCTGTCCAGGTTGCTTCTACAGCCACAATTATTAGCACAGGAAAGCTTAAGAGTTCTGTTAGGCGTAGGCCTTGGATACTTGATGATCATGTTGATCACATGGAAGAGAATTTTGAATGTGAATCTGATAAGGGTTCGTCTTCACACGCTTATCTTCCCAGAGGAGTGATCCGTGGATGTTCCAGTTGTCACAACTGCCAGAAGGTTATTGCAAGAAGTCGTCCGGAATCGGCACGGATCCCTTCACTTGATGAAGCTCCTGTACTCCATCCTACTGAAGAGGAATTTAAAGATACTCTCAAGTACGTTGCAAGCATCCTTCCACATGTCAAGCAATATGGAGTATGCCGTATTGTTCCTCCCTCTTCCTGGAGACCACCTTGCCGCATTGAAGAAGAGGACACGAGGTGTGGAGTCAACACTCGTATCCAGCGCATTAGTGACCTCCAGAGTCTGTTTTTAAAGATGAGACTTGAGGGAGCCCATAAGAAGACTAATAATAGGCGGCAGAAAATCCCAAGTATGAAGCCAGAGTTTGGACACAGCGTGGAACGTAAAGAATTTGGTTGTTGTGATGAACACTTTGAATTTGAAAGTGGACCAAAGTTTAAGTTGAAGTCTTTCAAGAATTACGCTGATCATTTCAAGAGGCAGTACTTTGTCAAGGAAGATCAGATCACAGCTTCAAACTTCAATTCAGATGCAATGCAGATGCTGTCAGAACCATCTATTCCTGATATTGAAGGGGAATACTGGAGAATTATTGAGAATCCAACTGAAGAAATTGAGGTGCTCCATGGGAATACTACGGAAACTAGTGCAAGCCAAAGTGGTTTTCCACTTAAAACCAATCCACGGGATGTAACTGCATGTCCAGAATATGTGGAATCAGGTTGGAACTTGAACAATACCCCTAAGCTTCAAGATTCTCTTCTCCGTTTTGAGAGTTGTAACAGTTCCTCTATTTTGCTTCCCCGGCTCTCCTTTGGAATGTGTTTTTCGTCTAATCAGTGGAGAATTGAAGAGCACCACTTATATTTGCTATCCTACATACATTTTGGCGCTCCAAGAATATTTTATGGGGTTCCCGGGAGTCATCGTTGCAAGTTTGAGGAAGCTGTCAAGAAGCATCTCCCACCGTTGTCAGCACATCCTTGTTTGCTTCACAACCTTGCCACACAATTCTCTCCTTCTATATTGACTTCAGAGGGTATACCTGTTTATCGTTGTGTGCAAAATCCAAAGGAGTTTGTTCTCATACTCCCTGGAGCATACCATGCAGAGTTTGATAGTGGATTTAATTGTTATGAAGCAGTAAATTTCTCTCCCTTTGACTGGTTACCACATGGTCAGAACGCTGTGGAACTGTACCGTGAGCAGGACAGAAAGACATCAATCTCCCATGATAAACTGTTGCTTGAAGCAGCTGCAGAAGCAATTAGGACCTTAGGAGAACTTGCACTGCGCAACAACAATTCTTTTGATGATTCAAAATGGAGAACAGTCTGTCGGAACTATGGTTATTTGACAAAAGCACTTAAGACACGGGTTGCCACCGAAGCGAGAAGACGGAAATATCTGTTTGCTTCTCTTGAATCACGAAAGATGGAGGATGACTTTTGTGCCACCACCAAACAGGAATGTGTTGCATGCTTCTGTGACCTATACCTTTCTGCCATTGGCTGCAAATGTTCTGCACATAAATATACTTGTCTTCTTCATGCCAAACAACTATGTGATTGTGCTTGGAGCGAGAGGTATTTGCTTATACGGTATGAAATAGATGAGTTGAACATCATGGTTGAAGATTTGGATCGAAAAGTAAGTGCAGTTCATAACAGGGCAAAAGAAAAACTTGGATTGCCTGTATCCGATGTTTCTAAAGATGCTATCAATGAAGTAGGTATGGAAACAATGAAGCATAAACCTGTAATTCCTAATGTGGAACTCTCCGAGAGTACATCTCACCGTTCAACCTCCAGACAAGCATCAGATATTCAACAGTACAGGAATGTAGATGTTTTCTTTGCACCTTCAGTTGTTCCAAGTTCAACAACAATGAATTTGAACCATCGATCACAATTGAAAGAAAACGTTCATGATGAGAATAAAGTTCTATTGCCAAAAGTATCACAGAATACTGCTGTTGGTGAAAATATTGCAACTTCTTCCAGTACAGTTCTCAAGAAACATCTTGCACAGGGGTCTTCATCGACAGTTAGAGATGTAATTATTCTCAGTGATGATGAAGATTAG
Protein Sequence
- >Solyc06g008490.3.1
MGAKRIRLQGECDDRKRFSVPPGFESLTSFTLQKVENNEEACNSVAVGNESEQGPVQVASTATIISTGKLKSSVRRRPWILDDHVDHMEENFECESDKGSSSHAYLPRGVIRGCSSCHNCQKVIARSRPESARIPSLDEAPVLHPTEEEFKDTLKYVASILPHVKQYGVCRIVPPSSWRPPCRIEEEDTRCGVNTRIQRISDLQSLFLKMRLEGAHKKTNNRRQKIPSMKPEFGHSVERKEFGCCDEHFEFESGPKFKLKSFKNYADHFKRQYFVKEDQITASNFNSDAMQMLSEPSIPDIEGEYWRIIENPTEEIEVLHGNTTETSASQSGFPLKTNPRDVTACPEYVESGWNLNNTPKLQDSLLRFESCNSSSILLPRLSFGMCFSSNQWRIEEHHLYLLSYIHFGAPRIFYGVPGSHRCKFEEAVKKHLPPLSAHPCLLHNLATQFSPSILTSEGIPVYRCVQNPKEFVLILPGAYHAEFDSGFNCYEAVNFSPFDWLPHGQNAVELYREQDRKTSISHDKLLLEAAAEAIRTLGELALRNNNSFDDSKWRTVCRNYGYLTKALKTRVATEARRRKYLFASLESRKMEDDFCATTKQECVACFCDLYLSAIGCKCSAHKYTCLLHAKQLCDCAWSERYLLIRYEIDELNIMVEDLDRKVSAVHNRAKEKLGLPVSDVSKDAINEVGMETMKHKPVIPNVELSESTSHRSTSRQASDIQQYRNVDVFFAPSVVPSSTTMNLNHRSQLKENVHDENKVLLPKVSQNTAVGENIATSSSTVLKKHLAQGSSSTVRDVIILSDDED*