Information report for SlWD40
Gene Details
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Functional Descriptions
- SlWD40 overexpression and RNAi lines exhibited substantially accelerated and delayed ripening phenotypes compared with the wild type, respectively.
- A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator.
- Moreover, transcriptome analysis of these transgenics revealed that expression patterns of ethylene biosynthesis genes, phytoene synthase, pectate lyase, and branched chain amino transferase 2, in SlWD40-RNAi lines were similar to those of rin and nor fruits, which further demonstrated that SlWD40 may act as an important ripening regulator in conjunction with RIN and NOR.
- The co-expression networks, metabolome and transcriptome analysis indicated that SlWD40 acted as a positive regulator of tomato ripening with the key ripening TFs such as RIN, NOR, AP2a, and SlWRKYs.
Functional Keywords
Literature and News
Sequences
cDNA Sequence
- >Solyc04g005020.3.1
ATGGGATTTCTTCCATGTTCTTTGCTTTGTCAAGCAAAGAAAAAACCATTAGATTCTTGTGATCAAACTGAGTCTAGACATCTTTCCTCAAATTCTTCATCATCATTAATATCATTATCCTCGAGATCATTATCATTATCATCTAGGTCATTTTCTTCACAGCCAAGTTTACCATCAATTCCTTCTCTTTCTATATCATCCTCTCAAGTTGAACATCTCTCAAACACCTTCCACCACTGCTTAGCCACACTAACAGGCCATTCTTCCTACATATTTTGCCTATCCATCGCGGAAAAACACCTCTATTATGGCTCTTCCAATGGAGAAATCCTTGTATGTGACATAAACTCTTCAAAACAGGACAATTGTTTAAAAGAAAAGACAGTATGCCAAAGTGGAAGTGCAATCAAATCTATTGTCATGATGGGAGATAAGCTCTTCAGTTCCCACCAAGATCATAAAATCCGAGTATGGAAAATTGACAATGAGACACCTAATAGAAATTACAAGAGCATTGCCACCTTACCAACGATCAACGATCGTTGCGTGAAGCTATTTTGGACAAGGAACTACGTACAAGTTCGAAGACACAAGAAATGCACATGGGTACATCACGTAGACACGGTGTCAGCATTAGCCTTATCGAAAGATGGCTCTCTGCTTTACTCTGCTTCATGGGACAGAACATTTAAGATTTGGAGAAGTTCAGATTTCAAATGCCTAGAATCAGTATGGAATGCACATGACGACGCGATCAACTCAATAGTTGTATCGAATAATGGAGATGTTTACACTGGTTCAGCAGACAAGAAGATCAAAATATGGACTAAACAACAAGAAGGGGGTTCTAATAAACACACTCTTATGACTGCACTAGAGAAGCATAAATCAGCAGTGAATGCTTTGGCTCTTAGTAGAGATGGTTGTGTTTTATACTCTGGTGCTTGTGATAGGTCTATAATTGTGTGGGAGAAATTGCAAGTGTTAGGGGCAATAAGAGGACATAAAAAATCAATTTTGTGTTTGGCTGTGGTGTCAAATGATTTGTTATGTAGTGGATCAGCTGATAAAACAGTGAGAATATGGAAAAGAGGATTAGGAAAATTTTGTTATTCATGTTTGGCTGTGTTTGAAGGACATAGAGGTCCAGTTAAGTGTTTGAATGCAACTTTAGATACTCAAAAGTATGATGATAATGATTCTTGTTCTGGAAATTCTTACATCATTTATAGTGGTAGCTTGGATTGTGATGTTAAGGTTTGGAAACTTTGGGTTCCTAATTACCTCTAGCTAGGATTCATCTCTTTCATATGTACTAATAGGAACATATTGTAAATATAAAAAGAGGACTATTCTCACTTAATTTTCTGTCTCTCTTTTTAGTTAGAAAGTCCCACCATGGCTAAATGACAGAG
CDS Sequence
- >Solyc04g005020.3.1
ATGGGATTTCTTCCATGTTCTTTGCTTTGTCAAGCAAAGAAAAAACCATTAGATTCTTGTGATCAAACTGAGTCTAGACATCTTTCCTCAAATTCTTCATCATCATTAATATCATTATCCTCGAGATCATTATCATTATCATCTAGGTCATTTTCTTCACAGCCAAGTTTACCATCAATTCCTTCTCTTTCTATATCATCCTCTCAAGTTGAACATCTCTCAAACACCTTCCACCACTGCTTAGCCACACTAACAGGCCATTCTTCCTACATATTTTGCCTATCCATCGCGGAAAAACACCTCTATTATGGCTCTTCCAATGGAGAAATCCTTGTATGTGACATAAACTCTTCAAAACAGGACAATTGTTTAAAAGAAAAGACAGTATGCCAAAGTGGAAGTGCAATCAAATCTATTGTCATGATGGGAGATAAGCTCTTCAGTTCCCACCAAGATCATAAAATCCGAGTATGGAAAATTGACAATGAGACACCTAATAGAAATTACAAGAGCATTGCCACCTTACCAACGATCAACGATCGTTGCGTGAAGCTATTTTGGACAAGGAACTACGTACAAGTTCGAAGACACAAGAAATGCACATGGGTACATCACGTAGACACGGTGTCAGCATTAGCCTTATCGAAAGATGGCTCTCTGCTTTACTCTGCTTCATGGGACAGAACATTTAAGATTTGGAGAAGTTCAGATTTCAAATGCCTAGAATCAGTATGGAATGCACATGACGACGCGATCAACTCAATAGTTGTATCGAATAATGGAGATGTTTACACTGGTTCAGCAGACAAGAAGATCAAAATATGGACTAAACAACAAGAAGGGGGTTCTAATAAACACACTCTTATGACTGCACTAGAGAAGCATAAATCAGCAGTGAATGCTTTGGCTCTTAGTAGAGATGGTTGTGTTTTATACTCTGGTGCTTGTGATAGGTCTATAATTGTGTGGGAGAAATTGCAAGTGTTAGGGGCAATAAGAGGACATAAAAAATCAATTTTGTGTTTGGCTGTGGTGTCAAATGATTTGTTATGTAGTGGATCAGCTGATAAAACAGTGAGAATATGGAAAAGAGGATTAGGAAAATTTTGTTATTCATGTTTGGCTGTGTTTGAAGGACATAGAGGTCCAGTTAAGTGTTTGAATGCAACTTTAGATACTCAAAAGTATGATGATAATGATTCTTGTTCTGGAAATTCTTACATCATTTATAGTGGTAGCTTGGATTGTGATGTTAAGGTTTGGAAACTTTGGGTTCCTAATTACCTCTAG
Protein Sequence
- >Solyc04g005020.3.1
MGFLPCSLLCQAKKKPLDSCDQTESRHLSSNSSSSLISLSSRSLSLSSRSFSSQPSLPSIPSLSISSSQVEHLSNTFHHCLATLTGHSSYIFCLSIAEKHLYYGSSNGEILVCDINSSKQDNCLKEKTVCQSGSAIKSIVMMGDKLFSSHQDHKIRVWKIDNETPNRNYKSIATLPTINDRCVKLFWTRNYVQVRRHKKCTWVHHVDTVSALALSKDGSLLYSASWDRTFKIWRSSDFKCLESVWNAHDDAINSIVVSNNGDVYTGSADKKIKIWTKQQEGGSNKHTLMTALEKHKSAVNALALSRDGCVLYSGACDRSIIVWEKLQVLGAIRGHKKSILCLAVVSNDLLCSGSADKTVRIWKRGLGKFCYSCLAVFEGHRGPVKCLNATLDTQKYDDNDSCSGNSYIIYSGSLDCDVKVWKLWVPNYL*