Gene Details:
- Gene ID: Solyc04g005020
- Gene Symbol: SlWD40
- Gene Name: WD-40 repeats
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- SlWD40 overexpression and RNAi lines exhibited substantially accelerated and delayed ripening phenotypes compared with the wild type, respectively.
- A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator.
- Moreover, transcriptome analysis of these transgenics revealed that expression patterns of ethylene biosynthesis genes, phytoene synthase, pectate lyase, and branched chain amino transferase 2, in SlWD40-RNAi lines were similar to those of rin and nor fruits, which further demonstrated that SlWD40 may act as an important ripening regulator in conjunction with RIN and NOR.
- The co-expression networks, metabolome and transcriptome analysis indicated that SlWD40 acted as a positive regulator of tomato ripening with the key ripening TFs such as RIN, NOR, AP2a, and SlWRKYs.
Function-related keywords:
Literature:
- A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. DOI: 10.1093/plphys/kiac200 ; PMID: 35512210
Related News:
Gene Resources:
Orthologs:
Sequences:
cDNA Sequence
- >Solyc04g005020.3.1
ATGGGATTTCTTCCATGTTCTTTGCTTTGTCAAGCAAAGAAAAAACCATTAGATTCTTGTGATCAAACTGAGTCTAGACATCTTTCCTCAAATTCTTCATCATCATTAATATCATTATCCTCGAGATCATTATCATTATCATCTAGGTCATTTTCTTCACAGCCAAGTTTACCATCAATTCCTTCTCTTTCTATATCATCCTCTCAAGTTGAACATCTCTCAAACACCTTCCACCACTGCTTAGCCACACTAACAGGCCATTCTTCCTACATATTTTGCCTATCCATCGCGGAAAAACACCTCTATTATGGCTCTTCCAATGGAGAAATCCTTGTATGTGACATAAACTCTTCAAAACAGGACAATTGTTTAAAAGAAAAGACAGTATGCCAAAGTGGAAGTGCAATCAAATCTATTGTCATGATGGGAGATAAGCTCTTCAGTTCCCACCAAGATCATAAAATCCGAGTATGGAAAATTGACAATGAGACACCTAATAGAAATTACAAGAGCATTGCCACCTTACCAACGATCAACGATCGTTGCGTGAAGCTATTTTGGACAAGGAACTACGTACAAGTTCGAAGACACAAGAAATGCACATGGGTACATCACGTAGACACGGTGTCAGCATTAGCCTTATCGAAAGATGGCTCTCTGCTTTACTCTGCTTCATGGGACAGAACATTTAAGATTTGGAGAAGTTCAGATTTCAAATGCCTAGAATCAGTATGGAATGCACATGACGACGCGATCAACTCAATAGTTGTATCGAATAATGGAGATGTTTACACTGGTTCAGCAGACAAGAAGATCAAAATATGGACTAAACAACAAGAAGGGGGTTCTAATAAACACACTCTTATGACTGCACTAGAGAAGCATAAATCAGCAGTGAATGCTTTGGCTCTTAGTAGAGATGGTTGTGTTTTATACTCTGGTGCTTGTGATAGGTCTATAATTGTGTGGGAGAAATTGCAAGTGTTAGGGGCAATAAGAGGACATAAAAAATCAATTTTGTGTTTGGCTGTGGTGTCAAATGATTTGTTATGTAGTGGATCAGCTGATAAAACAGTGAGAATATGGAAAAGAGGATTAGGAAAATTTTGTTATTCATGTTTGGCTGTGTTTGAAGGACATAGAGGTCCAGTTAAGTGTTTGAATGCAACTTTAGATACTCAAAAGTATGATGATAATGATTCTTGTTCTGGAAATTCTTACATCATTTATAGTGGTAGCTTGGATTGTGATGTTAAGGTTTGGAAACTTTGGGTTCCTAATTACCTCTAGCTAGGATTCATCTCTTTCATATGTACTAATAGGAACATATTGTAAATATAAAAAGAGGACTATTCTCACTTAATTTTCTGTCTCTCTTTTTAGTTAGAAAGTCCCACCATGGCTAAATGACAGAG
CDS Sequence
- >Solyc04g005020.3.1
ATGGGATTTCTTCCATGTTCTTTGCTTTGTCAAGCAAAGAAAAAACCATTAGATTCTTGTGATCAAACTGAGTCTAGACATCTTTCCTCAAATTCTTCATCATCATTAATATCATTATCCTCGAGATCATTATCATTATCATCTAGGTCATTTTCTTCACAGCCAAGTTTACCATCAATTCCTTCTCTTTCTATATCATCCTCTCAAGTTGAACATCTCTCAAACACCTTCCACCACTGCTTAGCCACACTAACAGGCCATTCTTCCTACATATTTTGCCTATCCATCGCGGAAAAACACCTCTATTATGGCTCTTCCAATGGAGAAATCCTTGTATGTGACATAAACTCTTCAAAACAGGACAATTGTTTAAAAGAAAAGACAGTATGCCAAAGTGGAAGTGCAATCAAATCTATTGTCATGATGGGAGATAAGCTCTTCAGTTCCCACCAAGATCATAAAATCCGAGTATGGAAAATTGACAATGAGACACCTAATAGAAATTACAAGAGCATTGCCACCTTACCAACGATCAACGATCGTTGCGTGAAGCTATTTTGGACAAGGAACTACGTACAAGTTCGAAGACACAAGAAATGCACATGGGTACATCACGTAGACACGGTGTCAGCATTAGCCTTATCGAAAGATGGCTCTCTGCTTTACTCTGCTTCATGGGACAGAACATTTAAGATTTGGAGAAGTTCAGATTTCAAATGCCTAGAATCAGTATGGAATGCACATGACGACGCGATCAACTCAATAGTTGTATCGAATAATGGAGATGTTTACACTGGTTCAGCAGACAAGAAGATCAAAATATGGACTAAACAACAAGAAGGGGGTTCTAATAAACACACTCTTATGACTGCACTAGAGAAGCATAAATCAGCAGTGAATGCTTTGGCTCTTAGTAGAGATGGTTGTGTTTTATACTCTGGTGCTTGTGATAGGTCTATAATTGTGTGGGAGAAATTGCAAGTGTTAGGGGCAATAAGAGGACATAAAAAATCAATTTTGTGTTTGGCTGTGGTGTCAAATGATTTGTTATGTAGTGGATCAGCTGATAAAACAGTGAGAATATGGAAAAGAGGATTAGGAAAATTTTGTTATTCATGTTTGGCTGTGTTTGAAGGACATAGAGGTCCAGTTAAGTGTTTGAATGCAACTTTAGATACTCAAAAGTATGATGATAATGATTCTTGTTCTGGAAATTCTTACATCATTTATAGTGGTAGCTTGGATTGTGATGTTAAGGTTTGGAAACTTTGGGTTCCTAATTACCTCTAG
Protein Sequence
- >Solyc04g005020.3.1
MGFLPCSLLCQAKKKPLDSCDQTESRHLSSNSSSSLISLSSRSLSLSSRSFSSQPSLPSIPSLSISSSQVEHLSNTFHHCLATLTGHSSYIFCLSIAEKHLYYGSSNGEILVCDINSSKQDNCLKEKTVCQSGSAIKSIVMMGDKLFSSHQDHKIRVWKIDNETPNRNYKSIATLPTINDRCVKLFWTRNYVQVRRHKKCTWVHHVDTVSALALSKDGSLLYSASWDRTFKIWRSSDFKCLESVWNAHDDAINSIVVSNNGDVYTGSADKKIKIWTKQQEGGSNKHTLMTALEKHKSAVNALALSRDGCVLYSGACDRSIIVWEKLQVLGAIRGHKKSILCLAVVSNDLLCSGSADKTVRIWKRGLGKFCYSCLAVFEGHRGPVKCLNATLDTQKYDDNDSCSGNSYIIYSGSLDCDVKVWKLWVPNYL*