Information report for SlAP2c
Gene Details
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Functional Descriptions
- SlAP2c, an APETALA2 (AP2) family member, acts as a transcriptional repressor to regulate carotenoid biosynthesis in tomato (Solanum lycopersicum).
- Knockout of SlAP2c in both the “MicroTom” and “Ailsa Craig” backgrounds resulted in greater lycopene accumulation, whereas overexpression of this gene led to orange-ripe fruit with significantly lower lycopene contents than the wild type.
- We established that SlAP2c represses the expression of genes involved in lycopene biosynthesis by directly binding to the cis-elements in their promoters.
- Overexpression of SlAP2c alters the carotenoid composition of tomato fruits.
- SlAP2a, a homolog of SlAP2c, acts upstream of SlAP2c and alleviates the SlAP2c-induced repression of lycopene biosynthesis genes by inhibiting SlAP2c transcription during fruit ripening.
- SlAP2c relies on its EAR motif to recruit the co-repressors TOPLESS (TPL)2/4 and forms a complex with histone deacetylase (had)1/3, thereby reducing the histone acetylation levels of lycopene biosynthesis genes.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 100736534
- UniProt accessions: F6KQN2
- EMBL: HQ586951
- EnsemblPlants: Solyc02g093150.3.1
- Gramene: Solyc02g093150.3.1
- KEGG: sly:100736534
- GO: GO:0003677 , GO:0003700 , GO:0005634
- OMA: DIDWQRH
- InterPro: IPR001471 , IPR016177 , IPR036955
- PANTHER: PTHR32467 , PTHR32467:SF142
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- OrthoDB: F6KQN2
- Pfam: PF00847
- SMR: F6KQN2
- CDD: cd00018
- STRING: 4081.F6KQN2
Sequences
cDNA Sequence
- >Solyc02g093150.3.1
ATATTTAAAAGTCTAGGAAACTCAAAACAAGTCCTTTTGTAGCAATAGCCAAAAAATTAAATTGTTTTCTGTTTTTATAATTTGGATTGGGTATTTTTTGTAGAGAGAAAAATGTGGGATCTAAATGAATCAGAAGAAGGTTGTTCTTCACCGATAGAGTTTGAAGGCGATGATGAGAAAGGTAAACGGGTCGGATCCGTTTCGAATTCAAGTTCATCAGCTGTAGCTGTTGATGATATATCTGAAGAGGAATTAGATGGAGAAAGAGGGAAGAAAAAGAGAGGTAAAATTTTCGGCTTCTCTATGGTGGGTCTGGGTAACGGCGATGAAGAACAGCCGGTGACCCGACAGTTTTTTCCGGTTGATGAGTCGGAAATGGGTGGTGTTGCTGCTGAAAATGGATGCCCGAATTTTCCCAGAGCTCACTGGGTTGGAGTTAAATTTTACCAAACGGAGACACTTGGCAACACGGGATTGGCCAGGCCTGTAGATATGGTTCAGCAGCAACAGCAGCCTATTAAGAAGAGCCGCCGTGGACCAAGGTCTAGAAGCTCACAGTACCGTGGGGTTACCTTCTACCGGAGAACTGGCCGGTGGGAATCTCATATATGGGATTGTGGAAAACAAGTTTATCTAGGTGGATTTGATACTGCTCATGCAGCAGCTCGGGCATACGATAGGGCAGCCATAAAATTCCGGGGAGTAGAAGCCGACATAAACTTTAGCTTAGAAGATTATGAGTCCGATTTAAAACAGATGACAAGTTTAACAAAGGAAGAATTTGTGCATGTGCTTCGAAGACAAAGTACTGGTTTTCCGAGGGGAAGCTCCAAGTATAGAGGGGTGACTTTGCACAAATGTGGTAGATGGGAAGCTAGAATGGGACAGTTCTTAGGCAAAAAGTACGTTTATTTGGGACTCTTTGATACTGAGATTGAAGCTGCCAGAGCGTATGATAAAGCTGCCATCAAGTGTAACGGGAAGGATGCAGTTACAAATTTTGATCCAAGCATTTATGAGAATGAACTAAACTCAATTGAATCTACCGATAACGTGGCTGATCATAATCTGGATTTAAGTTTGGGTGGTTCAAGCTCAAAGCAAGGAAGTCAAGAATTGGGGGATAATAGAGGTCAAAATTCTTCATCAATAATGCAATTGGATATTGATTGGCAGCGCCATGGTTTAAGGCCTGAGAAGCAATCTGCCTTAATTGATGCTCGAAGAAGAGAAAACAGGTACAATGAAACAGAAACGTTGCAACTTTTAAGCCAGACGCACTTGCATTCTCCAGCCTCCTTGAAGCATAACAATAATAATAATAGTCAAGTGCAACGGTTTGGCCAATTTATGAGACCTGGTGATCAATCCCATATGATTCAAATGTTTCCACAGCAATTTGGCTCATCAAATTATCAAATTCAATTTCCAAGTGGCAGCAATGGTGGAAGAATTGGAGCTACAAATGTAAGAGATCTATCGCTTGCGGCGACGAGTAATGGTTCTTCACAATGGCAATCCAATTTTCCTCCTCAGATATTTGTAGCTGCTGCAGCATCATCAGGATTCCCTCAGCAGATAGTAAGACCTCAGAATTGGTCCTCAGAAAATGGTTTCCATCATTCACTCATGAGACCTTCTTGACTCATTTAATAACTTGCCATATTTCTATTTGTGTTTTTTTTAAGATAATGTGTAGATTAAAGGGTTGATATTCTTAATACTCCATATATATTACCTAAGGCTCTTGGTTTGAAATTAGAAAAGAAAAAAAAAAGGTAGACAAAATGTTTTGGAAAATATGTCTCCTCGTTAATTTGTCCAATACTAACTGATCGGCAAGCTTTTCAACTAGACTTGTATTAGTTTATTCTGACTATGAACTGCCAATTTGGCCCATTCTCTCTCATTGTAACTTGTATACATTTGGGCTCTAGCTTCTCATGTAGTATTTGAAATACTATAATTTATTATTCCTTTGTTTTTGTTTTTCTTGTAACAAAAGTCCAACTACTATGTCTACTAATATATGAAAAATTTTAACTTTT
CDS Sequence
- >Solyc02g093150.3.1
ATGTGGGATCTAAATGAATCAGAAGAAGGTTGTTCTTCACCGATAGAGTTTGAAGGCGATGATGAGAAAGGTAAACGGGTCGGATCCGTTTCGAATTCAAGTTCATCAGCTGTAGCTGTTGATGATATATCTGAAGAGGAATTAGATGGAGAAAGAGGGAAGAAAAAGAGAGGTAAAATTTTCGGCTTCTCTATGGTGGGTCTGGGTAACGGCGATGAAGAACAGCCGGTGACCCGACAGTTTTTTCCGGTTGATGAGTCGGAAATGGGTGGTGTTGCTGCTGAAAATGGATGCCCGAATTTTCCCAGAGCTCACTGGGTTGGAGTTAAATTTTACCAAACGGAGACACTTGGCAACACGGGATTGGCCAGGCCTGTAGATATGGTTCAGCAGCAACAGCAGCCTATTAAGAAGAGCCGCCGTGGACCAAGGTCTAGAAGCTCACAGTACCGTGGGGTTACCTTCTACCGGAGAACTGGCCGGTGGGAATCTCATATATGGGATTGTGGAAAACAAGTTTATCTAGGTGGATTTGATACTGCTCATGCAGCAGCTCGGGCATACGATAGGGCAGCCATAAAATTCCGGGGAGTAGAAGCCGACATAAACTTTAGCTTAGAAGATTATGAGTCCGATTTAAAACAGATGACAAGTTTAACAAAGGAAGAATTTGTGCATGTGCTTCGAAGACAAAGTACTGGTTTTCCGAGGGGAAGCTCCAAGTATAGAGGGGTGACTTTGCACAAATGTGGTAGATGGGAAGCTAGAATGGGACAGTTCTTAGGCAAAAAGTACGTTTATTTGGGACTCTTTGATACTGAGATTGAAGCTGCCAGAGCGTATGATAAAGCTGCCATCAAGTGTAACGGGAAGGATGCAGTTACAAATTTTGATCCAAGCATTTATGAGAATGAACTAAACTCAATTGAATCTACCGATAACGTGGCTGATCATAATCTGGATTTAAGTTTGGGTGGTTCAAGCTCAAAGCAAGGAAGTCAAGAATTGGGGGATAATAGAGGTCAAAATTCTTCATCAATAATGCAATTGGATATTGATTGGCAGCGCCATGGTTTAAGGCCTGAGAAGCAATCTGCCTTAATTGATGCTCGAAGAAGAGAAAACAGGTACAATGAAACAGAAACGTTGCAACTTTTAAGCCAGACGCACTTGCATTCTCCAGCCTCCTTGAAGCATAACAATAATAATAATAGTCAAGTGCAACGGTTTGGCCAATTTATGAGACCTGGTGATCAATCCCATATGATTCAAATGTTTCCACAGCAATTTGGCTCATCAAATTATCAAATTCAATTTCCAAGTGGCAGCAATGGTGGAAGAATTGGAGCTACAAATGTAAGAGATCTATCGCTTGCGGCGACGAGTAATGGTTCTTCACAATGGCAATCCAATTTTCCTCCTCAGATATTTGTAGCTGCTGCAGCATCATCAGGATTCCCTCAGCAGATAGTAAGACCTCAGAATTGGTCCTCAGAAAATGGTTTCCATCATTCACTCATGAGACCTTCTTGA
Protein Sequence
- >Solyc02g093150.3.1
MWDLNESEEGCSSPIEFEGDDEKGKRVGSVSNSSSSAVAVDDISEEELDGERGKKKRGKIFGFSMVGLGNGDEEQPVTRQFFPVDESEMGGVAAENGCPNFPRAHWVGVKFYQTETLGNTGLARPVDMVQQQQQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYESDLKQMTSLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELNSIESTDNVADHNLDLSLGGSSSKQGSQELGDNRGQNSSSIMQLDIDWQRHGLRPEKQSALIDARRRENRYNETETLQLLSQTHLHSPASLKHNNNNNSQVQRFGQFMRPGDQSHMIQMFPQQFGSSNYQIQFPSGSNGGRIGATNVRDLSLAATSNGSSQWQSNFPPQIFVAAAASSGFPQQIVRPQNWSSENGFHHSLMRPS*