Information report for SlGRAS4
Gene Details
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Functional Descriptions
- SlGRAS4 mediates a novel regulatory pathway promoting chilling tolerance in tomato.
- Demonstrate that SlGRAS4, encoding a transcription factor induced by low temperature, promotes chilling tolerance in tomato leaves and fruit.
- SlGRAS4 can also directly bind tomato SlCBF promoters to activate their transcription without inducing any growth retardation.
- The study identifies the SlGRAS4-regulon as a new cold response pathway conferring cold stress tolerance in tomato independently of the ICE1-CBF pathway.
- SlGRAS4 accelerates fruit ripening by regulating ethylene biosynthesis genes and SlMADS1 in tomato.
Functional Keywords
Literature and News
- SlGRAS4 mediates a novel regulatory pathway promoting chilling tolerance in tomato. DOI: 10.1111/pbi.13328 ; PMID: 31916348
- Genome-wide identification, phylogeny and expression analysis of GRAS gene family in tomato. DOI: 10.1186/s12870-015-0590-6 ; PMID: 26302743
- SlGRAS4 accelerates fruit ripening by regulating ethylene biosynthesis genes and SlMADS1 in tomato. DOI: 10.1038/s41438-020-00431-9 ; PMID: 33384413
Gene Resources
- NCBI ID: 100037498
- UniProt accessions: Q00LP5
- EMBL: DQ399826
- EnsemblPlants: Solyc01g100200.3.1
- Gramene: Solyc01g100200.3.1
- KEGG: sly:100037498
- GO: GO:0003700 , GO:0005634 , GO:0006355 , GO:0043565
- OMA: RSEYHRD
- InterPro: IPR005202
- PANTHER: PTHR31636
- PROSITE: PS50985
- OrthoDB: Q00LP5
- Pfam: PF03514
- SMR: Q00LP5
- STRING: 4081.Q00LP5
- HOGENOM: CLU_011924_2_2_1
Sequences
cDNA Sequence
- >Solyc01g100200.3.1
TTCTAACCCTTCTTCTCTTCCTATTATTATACACTTGTATATATTCAAAGAGATATCATTTCTTAGCTTCCAACCTCAATACTACTTCTTCTACTACCACTTCAACAGCTATATATCAGGTACCATTCTCAGTTCCTATTTTTTGTTTCAGTTCTTCTTCTTCTTCTTCTTCTTTTTTTGGTTAGAATTTCTGGGATTGCTTTGATTTCTTCAATCAAACATCTCAGAATTTAGTAGCTCAAACCAATTTCCATGGAAGCCCTTTTTCAAGAACAGCTTTTTCCTTGTGCTGATTCTTTTATTTTTAGGCACCCTTCCATTCCAATGGATCCAAGAAAAGAAGTTATACAAAATGGACTCAATAATCATCCTAGTTTTGATCAAGATTACTTTTCAAATCATGTTGTTGGAGTGGGAGATTCTTCTCCTCCTCCTCAAGAGGAAGGGGAAAAGGACTATTCTGATGCAATGTACAAATTCTTAAGTCAGATGCTTATGGAAGAAGATGATTTGGAGAATAAGCCATGTATGTTTCATGACTGCATGGCTCTCCAAGCTAAAGAGAGATACTTATCTGATGTACTTCATGGATCCGAAAACAACTATTCCCCACAATCTGTCATTATCAATCCACACGATTCCTCTAGTTTTCTCAGCAACTATTCACCTGATTCTATTGAGTCACCTCAATGGGATCTTAATTTCGAATCCCCTGCTTCCATGTCCACTTTATCTAATCATGACTCTTTCTTCACTTCCTTCGGCAATGGCCATTTTGAAGAAGGAGCTGTCAATGTGTTACAAAGTGGCAGCAGCAGCAATTCACCAACTGGTCTGAGGGAAAAGAAAAATCGACATCGAGGAGATGTTGCTGCAGACCAGCAGAGGAGTAACAAACAGATGGCTACATTTGTTCATGATGAATCTGAACCATTGGAAATGTATGACAATGTGTTGCTTTGTTTAAACAATCCATATGTGGAACAGCATAGTGCTACTAGTATCACTTCCTACTCGCCGCCTAATGAAGCCAAAAAAACAAGCAAAGTTGGAAGGCCGAGAGGTGGTAGGAAGCATAGCAGCATTGTCAAGAAGGAAATGGTGGATTTGAGGGCTTTGTTGACTCAGTGTGCGCAGGCCATGGCAAACTATGATAGCAGAACAGCTAATGAGCTGCTGATGCGGATAAGAGAACACTCTACACCTCATGGCGATGGGACGGAGAGGTTGGCTCATTATCTTGCCAATGCCCTTGAAGCACGCCTGTCCGGCACGGGAACAGCTTTGTATACAGCCTACGCACCCAGTAGGATATCAGCTGCTAACATTTTGAAAGCTTACAAGGCATTTATCAGAGCATGTCCATTCAAGTTGCTGTCAAACATTTTCGCAAACAAGTATATCCGAAAGGTCATTGCTGGAGCACCAAAGATACACATAATTGATTTTGGTATCTTGTATGGTTTCCAATGGCCCTGTCTCATACAAGGTCTATCCATGAGGGCTGGGGGACCTCCAGAGCTTCGCATTACTGGAATCGATCTTCCCCAGCCAGGTTTCAAGCCAGCAGGGAGGGTTGAGGAGACAGGGCGTCGCTTGGAAAAGTACTGCAAGCGATTTAGTGTCCCTTTCGTATTCAAAGCCATCGCGAAGAAGTGGGAAAGCATCACGCTTGAAGAGCTTGAGGTTCAAAGGGATGAAGTGTTGGTAGTTAACAGTTTGTATAGGCTAGGAAACATACCTGATGAGACAGTAGTACCAAACAGTCCAAGGGATGCTGTCCTGAATTTAATCAGGAGGATCCGTCCTGATTTATTCATCCATGGTGCGTTGAACGGTACTTTCAACACTCCATTTTTCGTCACACGATTCAGGGAGGCGCTTTTTCACTTCTCTTCACTGTATGATATGTTTGAGGCTACTCTTCCCCGCGAGGACGAGGACAGAAAGCTATTCGAGGAAGAGGTTTTTGCAAGAGATGCTATGAACGTGATTGCTTGTGAAGGGACAGAGAGAGTTGAGAGACCTGAAACATACAAGCAGTGGCAACTTAGATGCGTTAGAGCTGGATTCAAACAGGTGCCACTTGACCAGGAGATTGTGAAGATAGTGAGGAATAAAGTGAGGTCGGAGTACCACAGGGACTTCTCAGTTGATGAAGATGGACACTGGATGCTACAAGGATGGAAAGGACGCGTAATTTACGCTCTCTCTTGTTGGAAGCCTACAAAGCAGTCTGTAAAATTAGTCTAGTTTATCAGGCCATTTCTTCTATGGCTGTATTTTCCTATGCTAGTGGAGTTTTATCTTTGTTTGTAGCAGCAGCATTTTGGAATTTATTCTAATTTAGTTTCACTCTCTCAAATGCTTCAAAAATTTCTCTCACTTGACGTGCAGAAGCATTACAAATGAAAGCCTTCTTTGAAGCTTAAACTCAAATAGCTTACGTGCATTTGGATTTTGGA
CDS Sequence
- >Solyc01g100200.3.1
ATGGAAGCCCTTTTTCAAGAACAGCTTTTTCCTTGTGCTGATTCTTTTATTTTTAGGCACCCTTCCATTCCAATGGATCCAAGAAAAGAAGTTATACAAAATGGACTCAATAATCATCCTAGTTTTGATCAAGATTACTTTTCAAATCATGTTGTTGGAGTGGGAGATTCTTCTCCTCCTCCTCAAGAGGAAGGGGAAAAGGACTATTCTGATGCAATGTACAAATTCTTAAGTCAGATGCTTATGGAAGAAGATGATTTGGAGAATAAGCCATGTATGTTTCATGACTGCATGGCTCTCCAAGCTAAAGAGAGATACTTATCTGATGTACTTCATGGATCCGAAAACAACTATTCCCCACAATCTGTCATTATCAATCCACACGATTCCTCTAGTTTTCTCAGCAACTATTCACCTGATTCTATTGAGTCACCTCAATGGGATCTTAATTTCGAATCCCCTGCTTCCATGTCCACTTTATCTAATCATGACTCTTTCTTCACTTCCTTCGGCAATGGCCATTTTGAAGAAGGAGCTGTCAATGTGTTACAAAGTGGCAGCAGCAGCAATTCACCAACTGGTCTGAGGGAAAAGAAAAATCGACATCGAGGAGATGTTGCTGCAGACCAGCAGAGGAGTAACAAACAGATGGCTACATTTGTTCATGATGAATCTGAACCATTGGAAATGTATGACAATGTGTTGCTTTGTTTAAACAATCCATATGTGGAACAGCATAGTGCTACTAGTATCACTTCCTACTCGCCGCCTAATGAAGCCAAAAAAACAAGCAAAGTTGGAAGGCCGAGAGGTGGTAGGAAGCATAGCAGCATTGTCAAGAAGGAAATGGTGGATTTGAGGGCTTTGTTGACTCAGTGTGCGCAGGCCATGGCAAACTATGATAGCAGAACAGCTAATGAGCTGCTGATGCGGATAAGAGAACACTCTACACCTCATGGCGATGGGACGGAGAGGTTGGCTCATTATCTTGCCAATGCCCTTGAAGCACGCCTGTCCGGCACGGGAACAGCTTTGTATACAGCCTACGCACCCAGTAGGATATCAGCTGCTAACATTTTGAAAGCTTACAAGGCATTTATCAGAGCATGTCCATTCAAGTTGCTGTCAAACATTTTCGCAAACAAGTATATCCGAAAGGTCATTGCTGGAGCACCAAAGATACACATAATTGATTTTGGTATCTTGTATGGTTTCCAATGGCCCTGTCTCATACAAGGTCTATCCATGAGGGCTGGGGGACCTCCAGAGCTTCGCATTACTGGAATCGATCTTCCCCAGCCAGGTTTCAAGCCAGCAGGGAGGGTTGAGGAGACAGGGCGTCGCTTGGAAAAGTACTGCAAGCGATTTAGTGTCCCTTTCGTATTCAAAGCCATCGCGAAGAAGTGGGAAAGCATCACGCTTGAAGAGCTTGAGGTTCAAAGGGATGAAGTGTTGGTAGTTAACAGTTTGTATAGGCTAGGAAACATACCTGATGAGACAGTAGTACCAAACAGTCCAAGGGATGCTGTCCTGAATTTAATCAGGAGGATCCGTCCTGATTTATTCATCCATGGTGCGTTGAACGGTACTTTCAACACTCCATTTTTCGTCACACGATTCAGGGAGGCGCTTTTTCACTTCTCTTCACTGTATGATATGTTTGAGGCTACTCTTCCCCGCGAGGACGAGGACAGAAAGCTATTCGAGGAAGAGGTTTTTGCAAGAGATGCTATGAACGTGATTGCTTGTGAAGGGACAGAGAGAGTTGAGAGACCTGAAACATACAAGCAGTGGCAACTTAGATGCGTTAGAGCTGGATTCAAACAGGTGCCACTTGACCAGGAGATTGTGAAGATAGTGAGGAATAAAGTGAGGTCGGAGTACCACAGGGACTTCTCAGTTGATGAAGATGGACACTGGATGCTACAAGGATGGAAAGGACGCGTAATTTACGCTCTCTCTTGTTGGAAGCCTACAAAGCAGTCTGTAAAATTAGTCTAG
Protein Sequence
- >Solyc01g100200.3.1
MEALFQEQLFPCADSFIFRHPSIPMDPRKEVIQNGLNNHPSFDQDYFSNHVVGVGDSSPPPQEEGEKDYSDAMYKFLSQMLMEEDDLENKPCMFHDCMALQAKERYLSDVLHGSENNYSPQSVIINPHDSSSFLSNYSPDSIESPQWDLNFESPASMSTLSNHDSFFTSFGNGHFEEGAVNVLQSGSSSNSPTGLREKKNRHRGDVAADQQRSNKQMATFVHDESEPLEMYDNVLLCLNNPYVEQHSATSITSYSPPNEAKKTSKVGRPRGGRKHSSIVKKEMVDLRALLTQCAQAMANYDSRTANELLMRIREHSTPHGDGTERLAHYLANALEARLSGTGTALYTAYAPSRISAANILKAYKAFIRACPFKLLSNIFANKYIRKVIAGAPKIHIIDFGILYGFQWPCLIQGLSMRAGGPPELRITGIDLPQPGFKPAGRVEETGRRLEKYCKRFSVPFVFKAIAKKWESITLEELEVQRDEVLVVNSLYRLGNIPDETVVPNSPRDAVLNLIRRIRPDLFIHGALNGTFNTPFFVTRFREALFHFSSLYDMFEATLPREDEDRKLFEEEVFARDAMNVIACEGTERVERPETYKQWQLRCVRAGFKQVPLDQEIVKIVRNKVRSEYHRDFSVDEDGHWMLQGWKGRVIYALSCWKPTKQSVKLV*