Gene Details:

Functional Descriptions:

  • We verified that Sl-miR166b cleaved transcripts of its target class III homeodomain-leucine zipper genes SlHDZ34 and SlHDZ45.
  • JA/ET is involved in lncRNA39896–miR166b–SlHDZs module-mediated resistance.
  • Silencing of SlHDZ34 and SlHDZ45 using VIGS technology decreased plant susceptibility to P. infestans.
  • Jasmonic acid and ethylene contents were elevated following infection in the plants with enhanced resistance. Sl-lncRNA39896 is the first known lncRNA to negatively regulate resistance to P. infestans in tomato. We propose a novel mechanism in which the lncRNA39896–miR166b–HDZ module modulates resistance to P. infestans.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >Solyc11g069470.3.1
    AAGCTGCTAAGGAAGTAGTTTCAGGGAATATATCTACTTGGGGGTGTTTTGAAAATCTTGATTTTTTTTTCTGGGGTTTGGATTTGAGGGAAAATGGCTATGGTGGCTCAACAGCATAGGGAGAGTAGTAGTGGTAGTATTACTAAACATCTTGATAGTAGTGGAAAGTATGTTCGATATACGGCTGAGCAAGTTGAGGCTTTGGAGAGGGTTTATGCAGAGTGTCCTAAGCCTAGCTCGTTGCGTCGACAGCAATTGATCCGTGAATGTCATATTCTGTCGAATATCGAGCCTAAGCAGATCAAAGTTTGGTTTCAGAACAGAAGGTGTCGAGAGAAGCAAAGGAAAGAGTCTTCTCGATTGCAGACTGTGAACAGAAAGTTGTCTGCGATGAATAAACTGTTGATGGAGGAGAATGACCGCTTGCAGAAACAAGTCTCGCAGCTTGTATGTGAAAATGGCTATATGCGGCAACAATTGCAAAGTGTATCGGCGGCCACTACTGATGTAAGTTGTGAATCAGTGGTAACCACTCCTCAGCATTCCCTTAGAGATGCTAACAACCCTGCTGGACTACTACCAATTGCAGAAGAAACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCCGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTTGGGATTTTTGCCATCTCACACAGTTGCAGTGGAGTGGCAGCCCGAGCATGTGGTCTTGTTAGTTTAGAGCCAACAAAGATTGCTGATATCCTCAAAGATCGACCTTCTTGGTTCCGCGACTGCCGGAATGTTGAAGTTATCACAATGTTTCCTGCTGGAAATGGTGGTACAGTTGAGCTTTTGTATACCCAGATATATGCTCCCACAACTCTGGCTCCCGCGCGTGATTTTTGGACGCTGAGATACACAACAACCCTAGACAATGGTAGTCTCGTGGTTTGTGAAAGATCCCTATCTGGTAATGGGCCTGGCCCAAATCCTACTGCTGCTTCCCAGTTTGTAAGAGCTCAAATGCTTCCATCTGGATATCTGATCCGACCGTGTGATGGTGGAGGATCAATCATACATATTGTTGATCACCTGAATCTTGAGGCATGGAGTGCCCCTGAGATTTTGCGTCCACTCTATGAATCGTCGAAAGTTGTGGCACAGAAAATGACTATTGCAGCACTGCGATATGCAAGGCAACTAGCTCAAGAGACTAGCGGCGAGGTAGTATATGGTCTAGGAAGGCAACCTGCTGTTCTTCGAACATTTAGCCAGAGATTATGCAGAGGGTTCAATGATGCCATCAATGGATTCGGTGACGATGGCTGGTCAATGTTAAGTTCAGATGGTGCTGAAGATGTCATAGTTGCTGTCAATTCAAGGAAGAACCTCGCAACCACCTCCATTCCTCTTTCCCCGCTTGGTGGCGTCCTTTGTGCCAAAGCATCAATGCTACTCCAGAATGTCCCCCCTGCCGTACTGGTTCGGTTTCTGAGGGAGCACCGTTCAGAGTGGGCAGACTTTAATGTTGATGCTTTTGTAGCTTCTGCATTGAAGTCTTGTCCGTATACATATCCTGGGATGAGGCCTACCAGATTTACCGGTAGCCAGATAATAATGCCACTTGGCCACACAATTGAGCATGAAGAAATGCTTGAAGTTATTAGACTTGAAGGGCACTCTATTGGACAGGAAGATGCTTTTATGCCAAGAGATATTCACCTTTTACAGATGTGTAGTGGCACTGATGAGAATGCAGTTGGAGCCTGTTCTGAACTAGTTTTTGCCCCTATTGATGAGATGTTTCCAGATGATGCACCTTTGCTTCCCTCCGGATTTCGCATTATTCCTCTCGAATCAAAATCAGGTGATGCCCAGGATACGTTGAACGCACATAGAACATTAGATCTAGCATCAAGTCTTGAAGTGGGCCCAGCAACAAACTCGACTACTGGAGATGCAGCTTCTTGTTACAGTGCACGATCTGTACTGACAATCGCTTTCCAATTTCCATTTGAGGACAATCTTCAGGACAATGTGGCTACCATGGCCCGACAGTATGTTCGCAGTGTGGTTTCGTCTGTCCAACGAGTTGCCATGGCAATATCTCCTACGGGAATGAATCCTACACTGGGGGCCAAGCTTTCTCCAGGCTCACCAGAAGCTGTAACATTGTCGCATTGGATCTGCCAGAGCTATAGTTATCACATGGGAACAGAGTTACTTCGAGCTGATTCTAGTGGCGATGAATCAGTACTAAAGAATCTCTGGCAACACCAGGATGCAATTTTGTGCTGCTCATTGAAGTCGCTGCCAGTTTTCATTTTTGCTAATAAGGCCGGACTCGACATGCTGGAGACAACATTAGTTGCATTACAGGACATTTCTCTAGATAAGATATTTGATGAATCCGGAAGGAAAGTGTTGCTCTCAGAATTTGCCAAGATTATGGAACAGGGTTTCGCGTGTTTGCCTGGTGGTATCTGCATGTCAACAATGGGACGACATATTTCATATGAACAAGCTATCGCGTGGAAAGTGTTTGCGTCGTCTGAAGAAAATGCTGTCCACTGTTTGGCCTTTTCGTTTATCAACTGGTCATTCGTGTAATGCTATCATATTTTTTTTTTCTTTTTCGACCTTTCTCACAGAATACTGATAGCCAGGAACACAGTTGAATGAGGGGACAAACGAAATTTTTTGTAACATGTAAAATTCCCAGTTTCTTCTGCATTAATTTAATTAGACTGGAAGGTGTATTTCATTTCTTGATTTCTTGATACTCTTGTGTAAATCTTTTTAGTGCAGTTTTGTTTTTGTTTTTTTTCGAGTGAAATTGCTTGTTTCTGAA
CDS Sequence
  • >Solyc11g069470.3.1
    ATGGCTATGGTGGCTCAACAGCATAGGGAGAGTAGTAGTGGTAGTATTACTAAACATCTTGATAGTAGTGGAAAGTATGTTCGATATACGGCTGAGCAAGTTGAGGCTTTGGAGAGGGTTTATGCAGAGTGTCCTAAGCCTAGCTCGTTGCGTCGACAGCAATTGATCCGTGAATGTCATATTCTGTCGAATATCGAGCCTAAGCAGATCAAAGTTTGGTTTCAGAACAGAAGGTGTCGAGAGAAGCAAAGGAAAGAGTCTTCTCGATTGCAGACTGTGAACAGAAAGTTGTCTGCGATGAATAAACTGTTGATGGAGGAGAATGACCGCTTGCAGAAACAAGTCTCGCAGCTTGTATGTGAAAATGGCTATATGCGGCAACAATTGCAAAGTGTATCGGCGGCCACTACTGATGTAAGTTGTGAATCAGTGGTAACCACTCCTCAGCATTCCCTTAGAGATGCTAACAACCCTGCTGGACTACTACCAATTGCAGAAGAAACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCCGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTTGGGATTTTTGCCATCTCACACAGTTGCAGTGGAGTGGCAGCCCGAGCATGTGGTCTTGTTAGTTTAGAGCCAACAAAGATTGCTGATATCCTCAAAGATCGACCTTCTTGGTTCCGCGACTGCCGGAATGTTGAAGTTATCACAATGTTTCCTGCTGGAAATGGTGGTACAGTTGAGCTTTTGTATACCCAGATATATGCTCCCACAACTCTGGCTCCCGCGCGTGATTTTTGGACGCTGAGATACACAACAACCCTAGACAATGGTAGTCTCGTGGTTTGTGAAAGATCCCTATCTGGTAATGGGCCTGGCCCAAATCCTACTGCTGCTTCCCAGTTTGTAAGAGCTCAAATGCTTCCATCTGGATATCTGATCCGACCGTGTGATGGTGGAGGATCAATCATACATATTGTTGATCACCTGAATCTTGAGGCATGGAGTGCCCCTGAGATTTTGCGTCCACTCTATGAATCGTCGAAAGTTGTGGCACAGAAAATGACTATTGCAGCACTGCGATATGCAAGGCAACTAGCTCAAGAGACTAGCGGCGAGGTAGTATATGGTCTAGGAAGGCAACCTGCTGTTCTTCGAACATTTAGCCAGAGATTATGCAGAGGGTTCAATGATGCCATCAATGGATTCGGTGACGATGGCTGGTCAATGTTAAGTTCAGATGGTGCTGAAGATGTCATAGTTGCTGTCAATTCAAGGAAGAACCTCGCAACCACCTCCATTCCTCTTTCCCCGCTTGGTGGCGTCCTTTGTGCCAAAGCATCAATGCTACTCCAGAATGTCCCCCCTGCCGTACTGGTTCGGTTTCTGAGGGAGCACCGTTCAGAGTGGGCAGACTTTAATGTTGATGCTTTTGTAGCTTCTGCATTGAAGTCTTGTCCGTATACATATCCTGGGATGAGGCCTACCAGATTTACCGGTAGCCAGATAATAATGCCACTTGGCCACACAATTGAGCATGAAGAAATGCTTGAAGTTATTAGACTTGAAGGGCACTCTATTGGACAGGAAGATGCTTTTATGCCAAGAGATATTCACCTTTTACAGATGTGTAGTGGCACTGATGAGAATGCAGTTGGAGCCTGTTCTGAACTAGTTTTTGCCCCTATTGATGAGATGTTTCCAGATGATGCACCTTTGCTTCCCTCCGGATTTCGCATTATTCCTCTCGAATCAAAATCAGGTGATGCCCAGGATACGTTGAACGCACATAGAACATTAGATCTAGCATCAAGTCTTGAAGTGGGCCCAGCAACAAACTCGACTACTGGAGATGCAGCTTCTTGTTACAGTGCACGATCTGTACTGACAATCGCTTTCCAATTTCCATTTGAGGACAATCTTCAGGACAATGTGGCTACCATGGCCCGACAGTATGTTCGCAGTGTGGTTTCGTCTGTCCAACGAGTTGCCATGGCAATATCTCCTACGGGAATGAATCCTACACTGGGGGCCAAGCTTTCTCCAGGCTCACCAGAAGCTGTAACATTGTCGCATTGGATCTGCCAGAGCTATAGTTATCACATGGGAACAGAGTTACTTCGAGCTGATTCTAGTGGCGATGAATCAGTACTAAAGAATCTCTGGCAACACCAGGATGCAATTTTGTGCTGCTCATTGAAGTCGCTGCCAGTTTTCATTTTTGCTAATAAGGCCGGACTCGACATGCTGGAGACAACATTAGTTGCATTACAGGACATTTCTCTAGATAAGATATTTGATGAATCCGGAAGGAAAGTGTTGCTCTCAGAATTTGCCAAGATTATGGAACAGGGTTTCGCGTGTTTGCCTGGTGGTATCTGCATGTCAACAATGGGACGACATATTTCATATGAACAAGCTATCGCGTGGAAAGTGTTTGCGTCGTCTGAAGAAAATGCTGTCCACTGTTTGGCCTTTTCGTTTATCAACTGGTCATTCGTGTAA
Protein Sequence
  • >Solyc11g069470.3.1
    MAMVAQQHRESSSGSITKHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECHILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGYMRQQLQSVSAATTDVSCESVVTTPQHSLRDANNPAGLLPIAEETLAEFLSKATGTAVDWVPMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPTKIADILKDRPSWFRDCRNVEVITMFPAGNGGTVELLYTQIYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGNGPGPNPTAASQFVRAQMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSAPEILRPLYESSKVVAQKMTIAALRYARQLAQETSGEVVYGLGRQPAVLRTFSQRLCRGFNDAINGFGDDGWSMLSSDGAEDVIVAVNSRKNLATTSIPLSPLGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAFVASALKSCPYTYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSIGQEDAFMPRDIHLLQMCSGTDENAVGACSELVFAPIDEMFPDDAPLLPSGFRIIPLESKSGDAQDTLNAHRTLDLASSLEVGPATNSTTGDAASCYSARSVLTIAFQFPFEDNLQDNVATMARQYVRSVVSSVQRVAMAISPTGMNPTLGAKLSPGSPEAVTLSHWICQSYSYHMGTELLRADSSGDESVLKNLWQHQDAILCCSLKSLPVFIFANKAGLDMLETTLVALQDISLDKIFDESGRKVLLSEFAKIMEQGFACLPGGICMSTMGRHISYEQAIAWKVFASSEENAVHCLAFSFINWSFV*