Information report for SlHDZ45
Gene Details
|
|
Functional Descriptions
- We verified that Sl-miR166b cleaved transcripts of its target class III homeodomain-leucine zipper genes SlHDZ34 and SlHDZ45.
- JA/ET is involved in lncRNA39896–miR166b–SlHDZs module-mediated resistance.
- Silencing of SlHDZ34 and SlHDZ45 using VIGS technology decreased plant susceptibility to P. infestans.
- Jasmonic acid and ethylene contents were elevated following infection in the plants with enhanced resistance. Sl-lncRNA39896 is the first known lncRNA to negatively regulate resistance to P. infestans in tomato. We propose a novel mechanism in which the lncRNA39896–miR166b–HDZ module modulates resistance to P. infestans.
Functional Keywords
- resistance , ja , ethylene , jasmonic , jasmonic-acid
Literature and News
Gene Resources
- NCBI ID: 101259910
- UniProt accessions: A0A3Q7J0V0
- AlphaFoldDB: A0A3Q7J0V0
- EnsemblPlants: Solyc11g069470.2.1
- Gramene: Solyc11g069470.2.1
- GO: GO:0003677 , GO:0003700 , GO:0005634 , GO:0008289 , GO:0030154
- OMA: WSLINCD
- InterPro: IPR001356 , IPR002913 , IPR009057 , IPR013978 , IPR023393 , IPR044830
- PANTHER: PTHR45950 , PTHR45950:SF10
- SUPFAM: SSF46689 , SSF55961
- PROSITE: PS50071 , PS50848
- Gene3D: 1.10.10.60 , 3.30.530.20
- Pfam: PF00046 , PF01852 , PF08670
- SMR: A0A3Q7J0V0
- CDD: cd00086 , cd08875 , cd14686
- STRING: 4081.A0A3Q7J0V0
Sequences
cDNA Sequence
- >Solyc11g069470.3.1
AAGCTGCTAAGGAAGTAGTTTCAGGGAATATATCTACTTGGGGGTGTTTTGAAAATCTTGATTTTTTTTTCTGGGGTTTGGATTTGAGGGAAAATGGCTATGGTGGCTCAACAGCATAGGGAGAGTAGTAGTGGTAGTATTACTAAACATCTTGATAGTAGTGGAAAGTATGTTCGATATACGGCTGAGCAAGTTGAGGCTTTGGAGAGGGTTTATGCAGAGTGTCCTAAGCCTAGCTCGTTGCGTCGACAGCAATTGATCCGTGAATGTCATATTCTGTCGAATATCGAGCCTAAGCAGATCAAAGTTTGGTTTCAGAACAGAAGGTGTCGAGAGAAGCAAAGGAAAGAGTCTTCTCGATTGCAGACTGTGAACAGAAAGTTGTCTGCGATGAATAAACTGTTGATGGAGGAGAATGACCGCTTGCAGAAACAAGTCTCGCAGCTTGTATGTGAAAATGGCTATATGCGGCAACAATTGCAAAGTGTATCGGCGGCCACTACTGATGTAAGTTGTGAATCAGTGGTAACCACTCCTCAGCATTCCCTTAGAGATGCTAACAACCCTGCTGGACTACTACCAATTGCAGAAGAAACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCCGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTTGGGATTTTTGCCATCTCACACAGTTGCAGTGGAGTGGCAGCCCGAGCATGTGGTCTTGTTAGTTTAGAGCCAACAAAGATTGCTGATATCCTCAAAGATCGACCTTCTTGGTTCCGCGACTGCCGGAATGTTGAAGTTATCACAATGTTTCCTGCTGGAAATGGTGGTACAGTTGAGCTTTTGTATACCCAGATATATGCTCCCACAACTCTGGCTCCCGCGCGTGATTTTTGGACGCTGAGATACACAACAACCCTAGACAATGGTAGTCTCGTGGTTTGTGAAAGATCCCTATCTGGTAATGGGCCTGGCCCAAATCCTACTGCTGCTTCCCAGTTTGTAAGAGCTCAAATGCTTCCATCTGGATATCTGATCCGACCGTGTGATGGTGGAGGATCAATCATACATATTGTTGATCACCTGAATCTTGAGGCATGGAGTGCCCCTGAGATTTTGCGTCCACTCTATGAATCGTCGAAAGTTGTGGCACAGAAAATGACTATTGCAGCACTGCGATATGCAAGGCAACTAGCTCAAGAGACTAGCGGCGAGGTAGTATATGGTCTAGGAAGGCAACCTGCTGTTCTTCGAACATTTAGCCAGAGATTATGCAGAGGGTTCAATGATGCCATCAATGGATTCGGTGACGATGGCTGGTCAATGTTAAGTTCAGATGGTGCTGAAGATGTCATAGTTGCTGTCAATTCAAGGAAGAACCTCGCAACCACCTCCATTCCTCTTTCCCCGCTTGGTGGCGTCCTTTGTGCCAAAGCATCAATGCTACTCCAGAATGTCCCCCCTGCCGTACTGGTTCGGTTTCTGAGGGAGCACCGTTCAGAGTGGGCAGACTTTAATGTTGATGCTTTTGTAGCTTCTGCATTGAAGTCTTGTCCGTATACATATCCTGGGATGAGGCCTACCAGATTTACCGGTAGCCAGATAATAATGCCACTTGGCCACACAATTGAGCATGAAGAAATGCTTGAAGTTATTAGACTTGAAGGGCACTCTATTGGACAGGAAGATGCTTTTATGCCAAGAGATATTCACCTTTTACAGATGTGTAGTGGCACTGATGAGAATGCAGTTGGAGCCTGTTCTGAACTAGTTTTTGCCCCTATTGATGAGATGTTTCCAGATGATGCACCTTTGCTTCCCTCCGGATTTCGCATTATTCCTCTCGAATCAAAATCAGGTGATGCCCAGGATACGTTGAACGCACATAGAACATTAGATCTAGCATCAAGTCTTGAAGTGGGCCCAGCAACAAACTCGACTACTGGAGATGCAGCTTCTTGTTACAGTGCACGATCTGTACTGACAATCGCTTTCCAATTTCCATTTGAGGACAATCTTCAGGACAATGTGGCTACCATGGCCCGACAGTATGTTCGCAGTGTGGTTTCGTCTGTCCAACGAGTTGCCATGGCAATATCTCCTACGGGAATGAATCCTACACTGGGGGCCAAGCTTTCTCCAGGCTCACCAGAAGCTGTAACATTGTCGCATTGGATCTGCCAGAGCTATAGTTATCACATGGGAACAGAGTTACTTCGAGCTGATTCTAGTGGCGATGAATCAGTACTAAAGAATCTCTGGCAACACCAGGATGCAATTTTGTGCTGCTCATTGAAGTCGCTGCCAGTTTTCATTTTTGCTAATAAGGCCGGACTCGACATGCTGGAGACAACATTAGTTGCATTACAGGACATTTCTCTAGATAAGATATTTGATGAATCCGGAAGGAAAGTGTTGCTCTCAGAATTTGCCAAGATTATGGAACAGGGTTTCGCGTGTTTGCCTGGTGGTATCTGCATGTCAACAATGGGACGACATATTTCATATGAACAAGCTATCGCGTGGAAAGTGTTTGCGTCGTCTGAAGAAAATGCTGTCCACTGTTTGGCCTTTTCGTTTATCAACTGGTCATTCGTGTAATGCTATCATATTTTTTTTTTCTTTTTCGACCTTTCTCACAGAATACTGATAGCCAGGAACACAGTTGAATGAGGGGACAAACGAAATTTTTTGTAACATGTAAAATTCCCAGTTTCTTCTGCATTAATTTAATTAGACTGGAAGGTGTATTTCATTTCTTGATTTCTTGATACTCTTGTGTAAATCTTTTTAGTGCAGTTTTGTTTTTGTTTTTTTTCGAGTGAAATTGCTTGTTTCTGAA
CDS Sequence
- >Solyc11g069470.3.1
ATGGCTATGGTGGCTCAACAGCATAGGGAGAGTAGTAGTGGTAGTATTACTAAACATCTTGATAGTAGTGGAAAGTATGTTCGATATACGGCTGAGCAAGTTGAGGCTTTGGAGAGGGTTTATGCAGAGTGTCCTAAGCCTAGCTCGTTGCGTCGACAGCAATTGATCCGTGAATGTCATATTCTGTCGAATATCGAGCCTAAGCAGATCAAAGTTTGGTTTCAGAACAGAAGGTGTCGAGAGAAGCAAAGGAAAGAGTCTTCTCGATTGCAGACTGTGAACAGAAAGTTGTCTGCGATGAATAAACTGTTGATGGAGGAGAATGACCGCTTGCAGAAACAAGTCTCGCAGCTTGTATGTGAAAATGGCTATATGCGGCAACAATTGCAAAGTGTATCGGCGGCCACTACTGATGTAAGTTGTGAATCAGTGGTAACCACTCCTCAGCATTCCCTTAGAGATGCTAACAACCCTGCTGGACTACTACCAATTGCAGAAGAAACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCCGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTTGGGATTTTTGCCATCTCACACAGTTGCAGTGGAGTGGCAGCCCGAGCATGTGGTCTTGTTAGTTTAGAGCCAACAAAGATTGCTGATATCCTCAAAGATCGACCTTCTTGGTTCCGCGACTGCCGGAATGTTGAAGTTATCACAATGTTTCCTGCTGGAAATGGTGGTACAGTTGAGCTTTTGTATACCCAGATATATGCTCCCACAACTCTGGCTCCCGCGCGTGATTTTTGGACGCTGAGATACACAACAACCCTAGACAATGGTAGTCTCGTGGTTTGTGAAAGATCCCTATCTGGTAATGGGCCTGGCCCAAATCCTACTGCTGCTTCCCAGTTTGTAAGAGCTCAAATGCTTCCATCTGGATATCTGATCCGACCGTGTGATGGTGGAGGATCAATCATACATATTGTTGATCACCTGAATCTTGAGGCATGGAGTGCCCCTGAGATTTTGCGTCCACTCTATGAATCGTCGAAAGTTGTGGCACAGAAAATGACTATTGCAGCACTGCGATATGCAAGGCAACTAGCTCAAGAGACTAGCGGCGAGGTAGTATATGGTCTAGGAAGGCAACCTGCTGTTCTTCGAACATTTAGCCAGAGATTATGCAGAGGGTTCAATGATGCCATCAATGGATTCGGTGACGATGGCTGGTCAATGTTAAGTTCAGATGGTGCTGAAGATGTCATAGTTGCTGTCAATTCAAGGAAGAACCTCGCAACCACCTCCATTCCTCTTTCCCCGCTTGGTGGCGTCCTTTGTGCCAAAGCATCAATGCTACTCCAGAATGTCCCCCCTGCCGTACTGGTTCGGTTTCTGAGGGAGCACCGTTCAGAGTGGGCAGACTTTAATGTTGATGCTTTTGTAGCTTCTGCATTGAAGTCTTGTCCGTATACATATCCTGGGATGAGGCCTACCAGATTTACCGGTAGCCAGATAATAATGCCACTTGGCCACACAATTGAGCATGAAGAAATGCTTGAAGTTATTAGACTTGAAGGGCACTCTATTGGACAGGAAGATGCTTTTATGCCAAGAGATATTCACCTTTTACAGATGTGTAGTGGCACTGATGAGAATGCAGTTGGAGCCTGTTCTGAACTAGTTTTTGCCCCTATTGATGAGATGTTTCCAGATGATGCACCTTTGCTTCCCTCCGGATTTCGCATTATTCCTCTCGAATCAAAATCAGGTGATGCCCAGGATACGTTGAACGCACATAGAACATTAGATCTAGCATCAAGTCTTGAAGTGGGCCCAGCAACAAACTCGACTACTGGAGATGCAGCTTCTTGTTACAGTGCACGATCTGTACTGACAATCGCTTTCCAATTTCCATTTGAGGACAATCTTCAGGACAATGTGGCTACCATGGCCCGACAGTATGTTCGCAGTGTGGTTTCGTCTGTCCAACGAGTTGCCATGGCAATATCTCCTACGGGAATGAATCCTACACTGGGGGCCAAGCTTTCTCCAGGCTCACCAGAAGCTGTAACATTGTCGCATTGGATCTGCCAGAGCTATAGTTATCACATGGGAACAGAGTTACTTCGAGCTGATTCTAGTGGCGATGAATCAGTACTAAAGAATCTCTGGCAACACCAGGATGCAATTTTGTGCTGCTCATTGAAGTCGCTGCCAGTTTTCATTTTTGCTAATAAGGCCGGACTCGACATGCTGGAGACAACATTAGTTGCATTACAGGACATTTCTCTAGATAAGATATTTGATGAATCCGGAAGGAAAGTGTTGCTCTCAGAATTTGCCAAGATTATGGAACAGGGTTTCGCGTGTTTGCCTGGTGGTATCTGCATGTCAACAATGGGACGACATATTTCATATGAACAAGCTATCGCGTGGAAAGTGTTTGCGTCGTCTGAAGAAAATGCTGTCCACTGTTTGGCCTTTTCGTTTATCAACTGGTCATTCGTGTAA
Protein Sequence
- >Solyc11g069470.3.1
MAMVAQQHRESSSGSITKHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECHILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGYMRQQLQSVSAATTDVSCESVVTTPQHSLRDANNPAGLLPIAEETLAEFLSKATGTAVDWVPMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPTKIADILKDRPSWFRDCRNVEVITMFPAGNGGTVELLYTQIYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGNGPGPNPTAASQFVRAQMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSAPEILRPLYESSKVVAQKMTIAALRYARQLAQETSGEVVYGLGRQPAVLRTFSQRLCRGFNDAINGFGDDGWSMLSSDGAEDVIVAVNSRKNLATTSIPLSPLGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAFVASALKSCPYTYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSIGQEDAFMPRDIHLLQMCSGTDENAVGACSELVFAPIDEMFPDDAPLLPSGFRIIPLESKSGDAQDTLNAHRTLDLASSLEVGPATNSTTGDAASCYSARSVLTIAFQFPFEDNLQDNVATMARQYVRSVVSSVQRVAMAISPTGMNPTLGAKLSPGSPEAVTLSHWICQSYSYHMGTELLRADSSGDESVLKNLWQHQDAILCCSLKSLPVFIFANKAGLDMLETTLVALQDISLDKIFDESGRKVLLSEFAKIMEQGFACLPGGICMSTMGRHISYEQAIAWKVFASSEENAVHCLAFSFINWSFV*