Information report for SlHB15A
Gene Details
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Functional Descriptions
- The miR166–SlHB15A regulatory module controls ovule development and parthenocarpic fruit set under adverse temperatures in tomato.
- SlHB15A loss-of-function mutants display aberrant ovule development that mimics transcriptional changes occurring in fertilized ovules and leads to parthenocarpic fruit set under optimal and non-permissive temperatures, in field and greenhouse conditions.
- Knockdown of SlHB15A alleles by miR166 leads to a continuum of aberrant ovules correlating with parthenocarpic fruit set.
- Our findings demonstrate the role of SlHB15A as a sentinel to prevent fruit set in the absence of fertilization and provide a mean to enhance fruiting under extreme temperatures.
- The miR166-targeted SlHB15A gene is expressed in the ovule integument and directly regulates auxin and ethylene signaling to prevent fruit set in the absence of fertilization.
Functional Keywords
Literature and News
- The miR166-SlHB15A regulatory module controls ovule development and parthenocarpic fruit set under adverse temperatures in tomato. DOI: 10.1016/j.molp.2021.05.005 ; PMID: 33964458
- Guarding tomato fruit setting in adverse temperatures through the miRNA166-SlHB15A regulatory module. DOI: 10.1016/j.molp.2021.06.020 ; PMID: 34182155
Gene Resources
- NCBI ID: 101257548
- UniProt accessions: A0A3Q7FTR8
- AlphaFoldDB: A0A3Q7FTR8
- EnsemblPlants: Solyc03g120910.3.1
- Gramene: Solyc03g120910.3.1
- GO: GO:0003677 , GO:0003700 , GO:0005634 , GO:0008289 , GO:0030154
- OMA: MMPREMF
- InterPro: IPR001356 , IPR002913 , IPR009057 , IPR013978 , IPR023393 , IPR044830
- PANTHER: PTHR45950 , PTHR45950:SF1
- SUPFAM: SSF46689 , SSF55961
- PROSITE: PS50071 , PS50848
- Gene3D: 1.10.10.60 , 3.30.530.20
- Pfam: PF00046 , PF01852 , PF08670
- CDD: cd00086 , cd08875 , cd14686
- STRING: 4081.A0A3Q7FTR8
Sequences
cDNA Sequence
- >Solyc03g120910.4.1
ATTGTTAACCAGTCCAAGATCCATCTTCTGATAATATCTCATCATGCCTACAAGATCTTCCTCTCTAGTCTTTGAAAATTTTGTAGGTGGTTCATGGGGTTGGTTTACTTTTTGTTGAAAAACTTAAAGATGCTTCAATTTTTGGGTACATGAAGAAGATCTGTTTCTGGGTTTGTGTGTTTTTTATCTTTTGAAGTCTAAAGCTTTGATCTTTTAGTGTTTCTCACACTTTTTTTTTTATCTTGTTTCAAGATTCAAAGGAAATGTTGTTAAAGATATTGTTTTTAAGTTCTTGAAGAATACTTTGATTCTTCTGTTTTTTTTTTTGGTAATGGTGAAAGATAAGTAAGGAAAGTGTGTATTTTTAGTAGTTTATTGTAAGCTCTGAAATCGAAAGATACAAGTTGTCTAGTGCCGTTTCAGTTTGGTAAATTGGTCTTCTCTTTTAGTATTACCAAGAAAAGGTCACTTCAAGACATTCTCATTTTGTTCAGAGCTCCCAATAAGAATAATGTTAAAAAAAGGTGAATTGTTGTGAAGACAAAAGTGAAGAAGAAGCAGAGTAACAGAGCTGGTTTTTTTTTCTCTCTCATTAAGGGCAAAGCATTCAAGTTTGTAAGATTTAAGAAAAAATGGCTTCCTGCAAGGATGGTAAGTCGGTGGTGTTGGATAACGGAAAGTATGTCCGGTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGATTGTCCTAAACCAAGTTCAATGCGCCGTCAGCAGCTTATCAGAGAATGTCCTATCCTCTCTAACATTGAACCTAAGCAAATCAAAGTTTGGTTCCAGAATCGAAGATGCAGGGAGAAACAGAGGAAAGAGGCGTCAAGGCTTCAGTCTGTGAATAGGAAGCTGACGGCAATGAACAAGCTATTAATGGAAGAAAATGATAGACTACAGAAGCAAGTTTCTCAACTGGTGTATGAAAATGGCTACTTTCGCAGGCAAAGTCACAGTACTCCACTTGCTACGAAAGATACCAGTTGTGATTCAGTAGTGACTAGTGGTCAGCACCACTTGACATCTCAGCATCCGCCGAGGGATGCTAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAACAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCAAGAGCTTGTGGCCTGGTTGGTCTCGAGCCAACGAGGGTCTCCGAAATCCTTAAGGATCGACCTTCTTGGTATCGTGACTGCCGGGTTGTTGAAGTTCTCAATGTGCTGCCTACTGCCAATGGTGGAACCATTGAACTCCTTTACATGCAGCTTTATGCACCAACAACGTTGGCACCTGCCCGTGATTTCTGGCTCTTACGTTATACAACTGTTATGGATGATGGCAGTCTCGTGGTGTGTGAAAGGTCACTTGGAAATACTCAAAATGGTCCAAGTATGCCACCTGTTCAGAATTTTGTGAGAGCAGAAATCCTACCTAGTGGATATCTGATTAGACCTTGTGAGGGGGGTGGTTCAATTATCCACATTGTTGATCATATGAATTTAGAGGCATGGAGTGTGCCTGAAGTCTTACGCCCACTTTATGAGTCATCAGCAGTGCTAGCTCAGAAGACGACAGTGGCTGCACTACGCTACCTCCGGCAGATTGCACAGGAGGTTTCACAGACTAATGTTACTAACTGGGGAAGACGACCCGCAGCTCTACGTGCATTAAGCCAGAGGCTGAGCAGAGGCTTCAATGAGGCTCTTAATGGTATAGCTGATGAGGGCTGGTCAATGCTGGATAGTGATGGAATGGATGATGTTACCATCCTTGTGAACTCTTCTCCTGACAAGTTGATGGGCTTAAACCTTCCTTTTGCGAATGGATTTTCACCTATGAGCAACGCGGTTATGTGTGCAAAAGCATCAATGCTTCTACAGAATGTGCCTCCGGCTATTCTTCTCAGGTTCCTACGTGAACATCGATCTGAATGGGCAGACAACAATATAGATGCTTATGCTGCTGCAGCCATTAAAGTTGGTCCCTGCAGCTTACCTGGGGCTCGAGTTGGTAACTTCGGGGGTCAAGTGATACTTCCACTCGCTCACACTGTTGAGCATGAAGAGTTGCTGGAGGTCATTAAGTTGGAAGGTCATTCTCCTGAGGACGCGATAATGCCACGAGATATGTTTCTATTGCAACTATGCAGTGGAATGGATGAAAATGCTGTTGGAACTTGTGCCGAACTCGTGTTTGCTCCTATTGATGCCTCTTTTGCTGATGATGCACCATTGCTTCCGTCTGGGTTTCGCATTATTTCACTCGAGTCTGGAAAGGAAGCGTCCAGTCCAAATCGTACCCTTGATCTTACTTCTGCTCTTGAGACTGGCCCAGCGGAAAACAAAGCAGCCAATGATCTTCACACTAGTGGTGGCTCATCAAGATCTGTCATGACAATTGCTTTTCAATTTGCTTTTGAAAGCCACATGCAAGAGAGTGTTGCTTCAATGGCTCGACAGTATGTCCGAAGCATTATTTCATCTGTTCAAAGAGTTGCATTAGCACTTTCACCATCTCATTTGGGTTCTCATGGAGGTCTTCGTTTGCCATTGGGGACTCCTGAAGCACATACATTAGCTCGTTGGATCTGCCAAAGTTACAGGTGCTTTTTGGGCGTGGAGCTTCTCAAATTGAATACTGATCAAGGAAGTGAATCAATCCTCAAAAGCCTATGGCATCACTCAGATGCTATTATCTGCTGCTCCGCTAAGGCTTTGCCAGTTTTCACATTTGCAAATCAGGCTGGTCTTGACATGCTCGAGACAACCTTGGTTGCACTTCAAGATATTACCTTGGAGAAAATATTTGATGATCATGGAAAGAAGAACCTCTGCACTGAGTTCCCCCAGATAATGCAACAGGGTTTTGCATGTCTACAAGGGGGAATTTGCTTGTCAAGCATGAGCAGACCTATATCTTATGAGAGAGCAGTAGCATGGAAAGTTATGAATGAAGAAGATACTGCTCATTGCATCTGTTTCATGTTTGTCAACTGGTCATTTGTCTAAGTTACTGTTCTTTAGATCTGTTTTAAAGGGATCAGTACACTAATACCTAAGAACCCTTAAATATTTTCCTTTCAGAATCAACATTTTGAACTAGTTGTGTGTGTTGAAAACTTGTTTATTGTTAAAACTTATGCTACTCAGTACCTTTATGCTATGTATTTTTTAATCCCGTGCTTCTT
CDS Sequence
- >Solyc03g120910.4.1
ATGGCTTCCTGCAAGGATGGTAAGTCGGTGGTGTTGGATAACGGAAAGTATGTCCGGTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGATTGTCCTAAACCAAGTTCAATGCGCCGTCAGCAGCTTATCAGAGAATGTCCTATCCTCTCTAACATTGAACCTAAGCAAATCAAAGTTTGGTTCCAGAATCGAAGATGCAGGGAGAAACAGAGGAAAGAGGCGTCAAGGCTTCAGTCTGTGAATAGGAAGCTGACGGCAATGAACAAGCTATTAATGGAAGAAAATGATAGACTACAGAAGCAAGTTTCTCAACTGGTGTATGAAAATGGCTACTTTCGCAGGCAAAGTCACAGTACTCCACTTGCTACGAAAGATACCAGTTGTGATTCAGTAGTGACTAGTGGTCAGCACCACTTGACATCTCAGCATCCGCCGAGGGATGCTAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAACAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCAAGAGCTTGTGGCCTGGTTGGTCTCGAGCCAACGAGGGTCTCCGAAATCCTTAAGGATCGACCTTCTTGGTATCGTGACTGCCGGGTTGTTGAAGTTCTCAATGTGCTGCCTACTGCCAATGGTGGAACCATTGAACTCCTTTACATGCAGCTTTATGCACCAACAACGTTGGCACCTGCCCGTGATTTCTGGCTCTTACGTTATACAACTGTTATGGATGATGGCAGTCTCGTGGTGTGTGAAAGGTCACTTGGAAATACTCAAAATGGTCCAAGTATGCCACCTGTTCAGAATTTTGTGAGAGCAGAAATCCTACCTAGTGGATATCTGATTAGACCTTGTGAGGGGGGTGGTTCAATTATCCACATTGTTGATCATATGAATTTAGAGGCATGGAGTGTGCCTGAAGTCTTACGCCCACTTTATGAGTCATCAGCAGTGCTAGCTCAGAAGACGACAGTGGCTGCACTACGCTACCTCCGGCAGATTGCACAGGAGGTTTCACAGACTAATGTTACTAACTGGGGAAGACGACCCGCAGCTCTACGTGCATTAAGCCAGAGGCTGAGCAGAGGCTTCAATGAGGCTCTTAATGGTATAGCTGATGAGGGCTGGTCAATGCTGGATAGTGATGGAATGGATGATGTTACCATCCTTGTGAACTCTTCTCCTGACAAGTTGATGGGCTTAAACCTTCCTTTTGCGAATGGATTTTCACCTATGAGCAACGCGGTTATGTGTGCAAAAGCATCAATGCTTCTACAGAATGTGCCTCCGGCTATTCTTCTCAGGTTCCTACGTGAACATCGATCTGAATGGGCAGACAACAATATAGATGCTTATGCTGCTGCAGCCATTAAAGTTGGTCCCTGCAGCTTACCTGGGGCTCGAGTTGGTAACTTCGGGGGTCAAGTGATACTTCCACTCGCTCACACTGTTGAGCATGAAGAGTTGCTGGAGGTCATTAAGTTGGAAGGTCATTCTCCTGAGGACGCGATAATGCCACGAGATATGTTTCTATTGCAACTATGCAGTGGAATGGATGAAAATGCTGTTGGAACTTGTGCCGAACTCGTGTTTGCTCCTATTGATGCCTCTTTTGCTGATGATGCACCATTGCTTCCGTCTGGGTTTCGCATTATTTCACTCGAGTCTGGAAAGGAAGCGTCCAGTCCAAATCGTACCCTTGATCTTACTTCTGCTCTTGAGACTGGCCCAGCGGAAAACAAAGCAGCCAATGATCTTCACACTAGTGGTGGCTCATCAAGATCTGTCATGACAATTGCTTTTCAATTTGCTTTTGAAAGCCACATGCAAGAGAGTGTTGCTTCAATGGCTCGACAGTATGTCCGAAGCATTATTTCATCTGTTCAAAGAGTTGCATTAGCACTTTCACCATCTCATTTGGGTTCTCATGGAGGTCTTCGTTTGCCATTGGGGACTCCTGAAGCACATACATTAGCTCGTTGGATCTGCCAAAGTTACAGGTGCTTTTTGGGCGTGGAGCTTCTCAAATTGAATACTGATCAAGGAAGTGAATCAATCCTCAAAAGCCTATGGCATCACTCAGATGCTATTATCTGCTGCTCCGCTAAGGCTTTGCCAGTTTTCACATTTGCAAATCAGGCTGGTCTTGACATGCTCGAGACAACCTTGGTTGCACTTCAAGATATTACCTTGGAGAAAATATTTGATGATCATGGAAAGAAGAACCTCTGCACTGAGTTCCCCCAGATAATGCAACAGGGTTTTGCATGTCTACAAGGGGGAATTTGCTTGTCAAGCATGAGCAGACCTATATCTTATGAGAGAGCAGTAGCATGGAAAGTTATGAATGAAGAAGATACTGCTCATTGCATCTGTTTCATGTTTGTCAACTGGTCATTTGTCTAA
Protein Sequence
- >Solyc03g120910.4.1
MASCKDGKSVVLDNGKYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQSVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRRQSHSTPLATKDTSCDSVVTSGQHHLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVSEILKDRPSWYRDCRVVEVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSMPPVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSAVLAQKTTVAALRYLRQIAQEVSQTNVTNWGRRPAALRALSQRLSRGFNEALNGIADEGWSMLDSDGMDDVTILVNSSPDKLMGLNLPFANGFSPMSNAVMCAKASMLLQNVPPAILLRFLREHRSEWADNNIDAYAAAAIKVGPCSLPGARVGNFGGQVILPLAHTVEHEELLEVIKLEGHSPEDAIMPRDMFLLQLCSGMDENAVGTCAELVFAPIDASFADDAPLLPSGFRIISLESGKEASSPNRTLDLTSALETGPAENKAANDLHTSGGSSRSVMTIAFQFAFESHMQESVASMARQYVRSIISSVQRVALALSPSHLGSHGGLRLPLGTPEAHTLARWICQSYRCFLGVELLKLNTDQGSESILKSLWHHSDAIICCSAKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKNLCTEFPQIMQQGFACLQGGICLSSMSRPISYERAVAWKVMNEEDTAHCICFMFVNWSFV*