Gene Details:

Functional Descriptions:

  • The miR166–SlHB15A regulatory module controls ovule development and parthenocarpic fruit set under adverse temperatures in tomato.
  • SlHB15A loss-of-function mutants display aberrant ovule development that mimics transcriptional changes occurring in fertilized ovules and leads to parthenocarpic fruit set under optimal and non-permissive temperatures, in field and greenhouse conditions.
  • Knockdown of SlHB15A alleles by miR166 leads to a continuum of aberrant ovules correlating with parthenocarpic fruit set.
  • Our findings demonstrate the role of SlHB15A as a sentinel to prevent fruit set in the absence of fertilization and provide a mean to enhance fruiting under extreme temperatures.
  • The miR166-targeted SlHB15A gene is expressed in the ovule integument and directly regulates auxin and ethylene signaling to prevent fruit set in the absence of fertilization.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >Solyc03g120910.4.1
    ATTGTTAACCAGTCCAAGATCCATCTTCTGATAATATCTCATCATGCCTACAAGATCTTCCTCTCTAGTCTTTGAAAATTTTGTAGGTGGTTCATGGGGTTGGTTTACTTTTTGTTGAAAAACTTAAAGATGCTTCAATTTTTGGGTACATGAAGAAGATCTGTTTCTGGGTTTGTGTGTTTTTTATCTTTTGAAGTCTAAAGCTTTGATCTTTTAGTGTTTCTCACACTTTTTTTTTTATCTTGTTTCAAGATTCAAAGGAAATGTTGTTAAAGATATTGTTTTTAAGTTCTTGAAGAATACTTTGATTCTTCTGTTTTTTTTTTTGGTAATGGTGAAAGATAAGTAAGGAAAGTGTGTATTTTTAGTAGTTTATTGTAAGCTCTGAAATCGAAAGATACAAGTTGTCTAGTGCCGTTTCAGTTTGGTAAATTGGTCTTCTCTTTTAGTATTACCAAGAAAAGGTCACTTCAAGACATTCTCATTTTGTTCAGAGCTCCCAATAAGAATAATGTTAAAAAAAGGTGAATTGTTGTGAAGACAAAAGTGAAGAAGAAGCAGAGTAACAGAGCTGGTTTTTTTTTCTCTCTCATTAAGGGCAAAGCATTCAAGTTTGTAAGATTTAAGAAAAAATGGCTTCCTGCAAGGATGGTAAGTCGGTGGTGTTGGATAACGGAAAGTATGTCCGGTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGATTGTCCTAAACCAAGTTCAATGCGCCGTCAGCAGCTTATCAGAGAATGTCCTATCCTCTCTAACATTGAACCTAAGCAAATCAAAGTTTGGTTCCAGAATCGAAGATGCAGGGAGAAACAGAGGAAAGAGGCGTCAAGGCTTCAGTCTGTGAATAGGAAGCTGACGGCAATGAACAAGCTATTAATGGAAGAAAATGATAGACTACAGAAGCAAGTTTCTCAACTGGTGTATGAAAATGGCTACTTTCGCAGGCAAAGTCACAGTACTCCACTTGCTACGAAAGATACCAGTTGTGATTCAGTAGTGACTAGTGGTCAGCACCACTTGACATCTCAGCATCCGCCGAGGGATGCTAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAACAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCAAGAGCTTGTGGCCTGGTTGGTCTCGAGCCAACGAGGGTCTCCGAAATCCTTAAGGATCGACCTTCTTGGTATCGTGACTGCCGGGTTGTTGAAGTTCTCAATGTGCTGCCTACTGCCAATGGTGGAACCATTGAACTCCTTTACATGCAGCTTTATGCACCAACAACGTTGGCACCTGCCCGTGATTTCTGGCTCTTACGTTATACAACTGTTATGGATGATGGCAGTCTCGTGGTGTGTGAAAGGTCACTTGGAAATACTCAAAATGGTCCAAGTATGCCACCTGTTCAGAATTTTGTGAGAGCAGAAATCCTACCTAGTGGATATCTGATTAGACCTTGTGAGGGGGGTGGTTCAATTATCCACATTGTTGATCATATGAATTTAGAGGCATGGAGTGTGCCTGAAGTCTTACGCCCACTTTATGAGTCATCAGCAGTGCTAGCTCAGAAGACGACAGTGGCTGCACTACGCTACCTCCGGCAGATTGCACAGGAGGTTTCACAGACTAATGTTACTAACTGGGGAAGACGACCCGCAGCTCTACGTGCATTAAGCCAGAGGCTGAGCAGAGGCTTCAATGAGGCTCTTAATGGTATAGCTGATGAGGGCTGGTCAATGCTGGATAGTGATGGAATGGATGATGTTACCATCCTTGTGAACTCTTCTCCTGACAAGTTGATGGGCTTAAACCTTCCTTTTGCGAATGGATTTTCACCTATGAGCAACGCGGTTATGTGTGCAAAAGCATCAATGCTTCTACAGAATGTGCCTCCGGCTATTCTTCTCAGGTTCCTACGTGAACATCGATCTGAATGGGCAGACAACAATATAGATGCTTATGCTGCTGCAGCCATTAAAGTTGGTCCCTGCAGCTTACCTGGGGCTCGAGTTGGTAACTTCGGGGGTCAAGTGATACTTCCACTCGCTCACACTGTTGAGCATGAAGAGTTGCTGGAGGTCATTAAGTTGGAAGGTCATTCTCCTGAGGACGCGATAATGCCACGAGATATGTTTCTATTGCAACTATGCAGTGGAATGGATGAAAATGCTGTTGGAACTTGTGCCGAACTCGTGTTTGCTCCTATTGATGCCTCTTTTGCTGATGATGCACCATTGCTTCCGTCTGGGTTTCGCATTATTTCACTCGAGTCTGGAAAGGAAGCGTCCAGTCCAAATCGTACCCTTGATCTTACTTCTGCTCTTGAGACTGGCCCAGCGGAAAACAAAGCAGCCAATGATCTTCACACTAGTGGTGGCTCATCAAGATCTGTCATGACAATTGCTTTTCAATTTGCTTTTGAAAGCCACATGCAAGAGAGTGTTGCTTCAATGGCTCGACAGTATGTCCGAAGCATTATTTCATCTGTTCAAAGAGTTGCATTAGCACTTTCACCATCTCATTTGGGTTCTCATGGAGGTCTTCGTTTGCCATTGGGGACTCCTGAAGCACATACATTAGCTCGTTGGATCTGCCAAAGTTACAGGTGCTTTTTGGGCGTGGAGCTTCTCAAATTGAATACTGATCAAGGAAGTGAATCAATCCTCAAAAGCCTATGGCATCACTCAGATGCTATTATCTGCTGCTCCGCTAAGGCTTTGCCAGTTTTCACATTTGCAAATCAGGCTGGTCTTGACATGCTCGAGACAACCTTGGTTGCACTTCAAGATATTACCTTGGAGAAAATATTTGATGATCATGGAAAGAAGAACCTCTGCACTGAGTTCCCCCAGATAATGCAACAGGGTTTTGCATGTCTACAAGGGGGAATTTGCTTGTCAAGCATGAGCAGACCTATATCTTATGAGAGAGCAGTAGCATGGAAAGTTATGAATGAAGAAGATACTGCTCATTGCATCTGTTTCATGTTTGTCAACTGGTCATTTGTCTAAGTTACTGTTCTTTAGATCTGTTTTAAAGGGATCAGTACACTAATACCTAAGAACCCTTAAATATTTTCCTTTCAGAATCAACATTTTGAACTAGTTGTGTGTGTTGAAAACTTGTTTATTGTTAAAACTTATGCTACTCAGTACCTTTATGCTATGTATTTTTTAATCCCGTGCTTCTT
CDS Sequence
  • >Solyc03g120910.4.1
    ATGGCTTCCTGCAAGGATGGTAAGTCGGTGGTGTTGGATAACGGAAAGTATGTCCGGTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGATTGTCCTAAACCAAGTTCAATGCGCCGTCAGCAGCTTATCAGAGAATGTCCTATCCTCTCTAACATTGAACCTAAGCAAATCAAAGTTTGGTTCCAGAATCGAAGATGCAGGGAGAAACAGAGGAAAGAGGCGTCAAGGCTTCAGTCTGTGAATAGGAAGCTGACGGCAATGAACAAGCTATTAATGGAAGAAAATGATAGACTACAGAAGCAAGTTTCTCAACTGGTGTATGAAAATGGCTACTTTCGCAGGCAAAGTCACAGTACTCCACTTGCTACGAAAGATACCAGTTGTGATTCAGTAGTGACTAGTGGTCAGCACCACTTGACATCTCAGCATCCGCCGAGGGATGCTAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAACAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCAAGAGCTTGTGGCCTGGTTGGTCTCGAGCCAACGAGGGTCTCCGAAATCCTTAAGGATCGACCTTCTTGGTATCGTGACTGCCGGGTTGTTGAAGTTCTCAATGTGCTGCCTACTGCCAATGGTGGAACCATTGAACTCCTTTACATGCAGCTTTATGCACCAACAACGTTGGCACCTGCCCGTGATTTCTGGCTCTTACGTTATACAACTGTTATGGATGATGGCAGTCTCGTGGTGTGTGAAAGGTCACTTGGAAATACTCAAAATGGTCCAAGTATGCCACCTGTTCAGAATTTTGTGAGAGCAGAAATCCTACCTAGTGGATATCTGATTAGACCTTGTGAGGGGGGTGGTTCAATTATCCACATTGTTGATCATATGAATTTAGAGGCATGGAGTGTGCCTGAAGTCTTACGCCCACTTTATGAGTCATCAGCAGTGCTAGCTCAGAAGACGACAGTGGCTGCACTACGCTACCTCCGGCAGATTGCACAGGAGGTTTCACAGACTAATGTTACTAACTGGGGAAGACGACCCGCAGCTCTACGTGCATTAAGCCAGAGGCTGAGCAGAGGCTTCAATGAGGCTCTTAATGGTATAGCTGATGAGGGCTGGTCAATGCTGGATAGTGATGGAATGGATGATGTTACCATCCTTGTGAACTCTTCTCCTGACAAGTTGATGGGCTTAAACCTTCCTTTTGCGAATGGATTTTCACCTATGAGCAACGCGGTTATGTGTGCAAAAGCATCAATGCTTCTACAGAATGTGCCTCCGGCTATTCTTCTCAGGTTCCTACGTGAACATCGATCTGAATGGGCAGACAACAATATAGATGCTTATGCTGCTGCAGCCATTAAAGTTGGTCCCTGCAGCTTACCTGGGGCTCGAGTTGGTAACTTCGGGGGTCAAGTGATACTTCCACTCGCTCACACTGTTGAGCATGAAGAGTTGCTGGAGGTCATTAAGTTGGAAGGTCATTCTCCTGAGGACGCGATAATGCCACGAGATATGTTTCTATTGCAACTATGCAGTGGAATGGATGAAAATGCTGTTGGAACTTGTGCCGAACTCGTGTTTGCTCCTATTGATGCCTCTTTTGCTGATGATGCACCATTGCTTCCGTCTGGGTTTCGCATTATTTCACTCGAGTCTGGAAAGGAAGCGTCCAGTCCAAATCGTACCCTTGATCTTACTTCTGCTCTTGAGACTGGCCCAGCGGAAAACAAAGCAGCCAATGATCTTCACACTAGTGGTGGCTCATCAAGATCTGTCATGACAATTGCTTTTCAATTTGCTTTTGAAAGCCACATGCAAGAGAGTGTTGCTTCAATGGCTCGACAGTATGTCCGAAGCATTATTTCATCTGTTCAAAGAGTTGCATTAGCACTTTCACCATCTCATTTGGGTTCTCATGGAGGTCTTCGTTTGCCATTGGGGACTCCTGAAGCACATACATTAGCTCGTTGGATCTGCCAAAGTTACAGGTGCTTTTTGGGCGTGGAGCTTCTCAAATTGAATACTGATCAAGGAAGTGAATCAATCCTCAAAAGCCTATGGCATCACTCAGATGCTATTATCTGCTGCTCCGCTAAGGCTTTGCCAGTTTTCACATTTGCAAATCAGGCTGGTCTTGACATGCTCGAGACAACCTTGGTTGCACTTCAAGATATTACCTTGGAGAAAATATTTGATGATCATGGAAAGAAGAACCTCTGCACTGAGTTCCCCCAGATAATGCAACAGGGTTTTGCATGTCTACAAGGGGGAATTTGCTTGTCAAGCATGAGCAGACCTATATCTTATGAGAGAGCAGTAGCATGGAAAGTTATGAATGAAGAAGATACTGCTCATTGCATCTGTTTCATGTTTGTCAACTGGTCATTTGTCTAA
Protein Sequence
  • >Solyc03g120910.4.1
    MASCKDGKSVVLDNGKYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQSVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRRQSHSTPLATKDTSCDSVVTSGQHHLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVSEILKDRPSWYRDCRVVEVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSMPPVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSAVLAQKTTVAALRYLRQIAQEVSQTNVTNWGRRPAALRALSQRLSRGFNEALNGIADEGWSMLDSDGMDDVTILVNSSPDKLMGLNLPFANGFSPMSNAVMCAKASMLLQNVPPAILLRFLREHRSEWADNNIDAYAAAAIKVGPCSLPGARVGNFGGQVILPLAHTVEHEELLEVIKLEGHSPEDAIMPRDMFLLQLCSGMDENAVGTCAELVFAPIDASFADDAPLLPSGFRIISLESGKEASSPNRTLDLTSALETGPAENKAANDLHTSGGSSRSVMTIAFQFAFESHMQESVASMARQYVRSIISSVQRVALALSPSHLGSHGGLRLPLGTPEAHTLARWICQSYRCFLGVELLKLNTDQGSESILKSLWHHSDAIICCSAKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKNLCTEFPQIMQQGFACLQGGICLSSMSRPISYERAVAWKVMNEEDTAHCICFMFVNWSFV*