Information report for SlDQD;SDH2
Gene Details
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Functional Descriptions
- The MADS-box protein SlTAGL1 regulates a ripening-associated SlDQD/SDH2 involved in flavonoid biosynthesis and resistance against Botrytis cinerea in post-harvest tomato fruit.
- A ripening-associated SlDQD/SDH member, SlDQD/SDH2, that plays a key role in shikimate and flavonoid metabolism. Overexpression of this gene resulted in an increased content of shikimate and flavonoids, while knockout of this gene by CRISPR/Cas9 mediated gene editing led to a significantly lower content of shikimate and flavonoids by downregulation of flavonoid biosynthesis-related genes.
- The function of SlDQD/SDH family genes in tomato (Solanum lycopersicum) fruit metabolites is still unknown. In the present study, we identified a ripening-associated SlDQD/SDH member, SlDQD/SDH2, that plays a key role in shikimate and flavonoid metabolism.
- Dual-luciferase reporter and EMSA assays indicated that SlDQD/SDH2 is a direct target of the key ripening regulator SlTAGL1.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 101258500
- UniProt accessions: A0A3Q7IET9
- AlphaFoldDB: A0A3Q7IET9
- EnsemblPlants: Solyc10g038080.2.1
- Gramene: Solyc10g038080.2.1
- KEGG: sly:101258500
- GO: GO:0003855 , GO:0004764 , GO:0009423 , GO:0019632
- OMA: TIIRRPC
- InterPro: IPR001381 , IPR013708 , IPR013785 , IPR022893 , IPR036291 , IPR041121 , IPR046346
- PANTHER: PTHR21089 , PTHR21089:SF10
- SUPFAM: SSF51569 , SSF51735 , SSF53223
- Gene3D: 3.20.20.70 , 3.40.50.10860 , 3.40.50.720
- OrthoDB: A0A3Q7IET9
- Pfam: PF01487 , PF08501 , PF18317
- SMR: A0A3Q7IET9
- CDD: cd00502 , cd01065
- STRING: 4081.A0A3Q7IET9
Sequences
cDNA Sequence
- >Solyc10g038080.3.1
ATATTTGAAGGAAGGAAAAATAATTTTTATGAGAATTCAAATGTAGTTAAAAAAATAAATGTATAGTCAGCGATGAGGCAGCAAGCCACCTACTATTTCTACGGAATTGGCGCAGTATGCAAAAATCAAATGATTCAATTTTTGTTATCTTAATTAGTTTTCAAAGTTGTTGGGTTCCATTCCAAACAAGATTCTCCAACCCCCATTCCATTACTTAAATCTATTACCTATCTTTCACTAACCTACTCAACAACAAATAAATTTCCCAAATTCAACATTTTTTTTCACTATAAATCCCTAAAAGTGGATTATGTTTTAATTCCTAAAAGGGGAAATAATGGGTAGTGTTGGATTGTTGAAGAATTCCGCCATGGTTTGTGCTCCATTAATGGCGACATCAGTGGATCAATTAATTGATGAAATGGTTGAGGCTAAATCACAAGGTGCAGATTGTGTTGAGATTAGGCTTGATGCTATCCACAATTTCCAACCTCACAAACATCTTCAACTTCTCTTCAAAAATAAGCCACTCCCTATTCTCATTCTTTACAGGCCAATATGGGAAAGAAATGACTTTGAAGCTGATGCCCACAAACAATTGGAAGCCCTTCGGTTGGCTAAAGAATTGGGAGCTGATTATGTTGAGTTGGACCTCAAGATAGCTAGTGAGTTTGCAAAAAATGAAAAGTCGAGTTGGAGTAGTGGTTGTAAACTAATTACATCATGCTTCGTGGACAATGTGACCTCAAAAGAAGACCTCAGCCAAGTTGTTGCATCCATGCAATCTACTGGGGCAGATATCCTCAAATTGTTATAAATGCAAATGACATTACAGAACTAGAGAAAACGTTTCACTTGCTTTCACATTGCCAGGTGCCGCTTATCGCCTACTCTGTTGGGGAAGAGGTCTCATAAGTCAGCTGTTGGGCCCAAATTCGGTAGTGTCCTATTATATGGATCTCTTGATGGTAATGCAGTGCCTGGTCTTCCTTCTCTTGCCAGCCTTAGACAAGCCTACGGAGTTGATTTGATGGATAATGATACTAAAGTTTTTGGGCTCATTTCTAAACCAGTGGGTCATAGTAAAGGACCTATTTTGCATAATCCAACGTTTAGACATGTGGGTTATAATGGAATTTATGTTCCAATGTTTGTGGATGATCTTAAGGAGTTCTTTAGGGTCTACTCAAGTCCCGACTTTGCTGGTTTCAGTGTTGGAATTCCATACAAGGAAGCAGTGGTGAGCTTTTGTGATGAAGTCGATCCATTGGCTGAGTCCATAGGGGCTGTAAATACCATCATACGGAGGCCTTGCGATGGGAAGTTAATTGGTTACAACACAGATTGTGAGGCTTCTATAACAGCCATCGAGGATGCTTTGAAAGCAAATGGAGAAGCTTTAGTTCCTTGTTCACTCGCTAGGAAAATGTTTGTGTTGGTGGGTGCTGGAGGTGCAGGAAGAGCTCTTGCATTCGGAGCCAAGAGCAGGGGAGCTCGAATTGTGATTTTTGACATTGATTTTGATAGAGCAAAAGCTCTTGCTGCCGCAGTTAGTGGTGAAGCTCTGCCATTTGAAAAATTAGCTTCTTTTCAGCCAGAGAAAGGTGCAATCCTTGCGAATGCAACACCTATAGGAATGCATCCAAATAAAGATAGGATACCTGTGCCTGAGGGAAGCTTAAAGGATTATGTAGTGGTGTTTGATGCTGTATATACACCACGAAGGACTACTCTACTGGAAGATGCGGAGGCTGCTGGAGCACTCATTGTAAGTGGAGTTGAAATGTTTCTTAGACAGGCTATAGGACAGTTCAACCTTTTCACAGGAAGTAAAGCACCAGAAGAATTCATGCGTGACATCGTTATGTCAAAATTCTAATCATCAACAATTTCAATTAAATTTGTGAAACGCCAACAAGGCTGGCAAAAATTGCATATTTTTTATTCATGACACAAAATCTTGTTAGTATTTTCTTGGATAGCAAAAACTATTGTTGTAATTCAACAATTTGTGCAAATTTGATTCATTTTAAACAAACCATCTTAATTTTTATTTCT
CDS Sequence
- >Solyc10g038080.3.1
ATGGATAATGATACTAAAGTTTTTGGGCTCATTTCTAAACCAGTGGGTCATAGTAAAGGACCTATTTTGCATAATCCAACGTTTAGACATGTGGGTTATAATGGAATTTATGTTCCAATGTTTGTGGATGATCTTAAGGAGTTCTTTAGGGTCTACTCAAGTCCCGACTTTGCTGGTTTCAGTGTTGGAATTCCATACAAGGAAGCAGTGGTGAGCTTTTGTGATGAAGTCGATCCATTGGCTGAGTCCATAGGGGCTGTAAATACCATCATACGGAGGCCTTGCGATGGGAAGTTAATTGGTTACAACACAGATTGTGAGGCTTCTATAACAGCCATCGAGGATGCTTTGAAAGCAAATGGAGAAGCTTTAGTTCCTTGTTCACTCGCTAGGAAAATGTTTGTGTTGGTGGGTGCTGGAGGTGCAGGAAGAGCTCTTGCATTCGGAGCCAAGAGCAGGGGAGCTCGAATTGTGATTTTTGACATTGATTTTGATAGAGCAAAAGCTCTTGCTGCCGCAGTTAGTGGTGAAGCTCTGCCATTTGAAAAATTAGCTTCTTTTCAGCCAGAGAAAGGTGCAATCCTTGCGAATGCAACACCTATAGGAATGCATCCAAATAAAGATAGGATACCTGTGCCTGAGGGAAGCTTAAAGGATTATGTAGTGGTGTTTGATGCTGTATATACACCACGAAGGACTACTCTACTGGAAGATGCGGAGGCTGCTGGAGCACTCATTGTAAGTGGAGTTGAAATGTTTCTTAGACAGGCTATAGGACAGTTCAACCTTTTCACAGGAAGTAAAGCACCAGAAGAATTCATGCGTGACATCGTTATGTCAAAATTCTAA
Protein Sequence
- >Solyc10g038080.3.1
MDNDTKVFGLISKPVGHSKGPILHNPTFRHVGYNGIYVPMFVDDLKEFFRVYSSPDFAGFSVGIPYKEAVVSFCDEVDPLAESIGAVNTIIRRPCDGKLIGYNTDCEASITAIEDALKANGEALVPCSLARKMFVLVGAGGAGRALAFGAKSRGARIVIFDIDFDRAKALAAAVSGEALPFEKLASFQPEKGAILANATPIGMHPNKDRIPVPEGSLKDYVVVFDAVYTPRRTTLLEDAEAAGALIVSGVEMFLRQAIGQFNLFTGSKAPEEFMRDIVMSKF*