Information report for SlDDB1
Gene Details
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Functional Descriptions
- SlDDB1 seedlings exhibited delayed growth and smaller cell size, greater chloroplast density, smaller chloroplasts and higher concentration of chlorophyll.
- Cotyledons cells of SlDDB1 mutant also displayed abnormal stomatal pattern, reduced content of CDT1 transcript and altered response to cytokinin.
- A mutation in the tomato DDB1 gene affects cell and chloroplast compartment size and CDT1 transcript.
- We show that a tomato homolog of methyl CpG binding domain protein (SlMBD5) interacts physically with SlDDB1, and is potentially in a complex with CUL4-DDB1-DET1.
Functional Keywords
Literature and News
- A mutation in the tomato DDB1 gene affects cell and chloroplast compartment size and CDT1 transcript. DOI: 10.4161/psb.3.9.6413 ; PMID: 19513255
- Tomato MBD5, a methyl CpG binding domain protein, physically interacting with UV-damaged DNA binding protein-1, functions in multiple processes. DOI: 10.1111/nph.13745 ; PMID: 26551231
Gene Resources
- NCBI ID: 778355
- UniProt accessions: Q6QNU4
- EMBL: AY452480 , AY531660
- AlphaFoldDB: Q6QNU4
- KEGG: sly:778355
- GO: GO:0003676 , GO:0005634 , GO:0009585 , GO:0016567
- InterPro: IPR004871 , IPR011047 , IPR015943 , IPR018846 , IPR050358
- PANTHER: PTHR10644
- SUPFAM: SSF50998
- Gene3D: 1.10.150.910 , 2.130.10.10
- OrthoDB: Q6QNU4
- Pfam: PF03178 , PF10433 , PF23726
- SMR: Q6QNU4
- STRING: 4081.Q6QNU4
Sequences
cDNA Sequence
- >Solyc02g021650.3.1
ATTTTCTTTGAACTCTGTCAACATACTAGATGTTTCTCTTCATTGCCGATATATATATGCTGTGTCTCGTTTTCCCCCATTTGTGTCTCTTTTCTATTTTCAAGTGATTCAACTGAAACAAGTATTAGGGTTTGTAGGTATAGCGGGAAGAGGGAAGATACAAGATGAGTGTATGGAACTACGTGGTTACGGCTCACAAACCAACAAATGTTACACATTCCTGTGTTGGCAATTTCACCGGTCCTCAAGAGCTCAATCTTATCATTGCGAAATGTACTCGAATCGAGATTCATTTACTTACTCCCCAAGGTTTACAGTGCATTTGTCTGCAGCCTATGTTAGATGTGCCAATATATGGGAGGATCGCGACACTTGAGCTTTTTCGTCCTCACGGTGAAACACAAGATCTTCTCTTCATCGCAACAGAGCGATATAAATTCTGTGTCCTTCAATGGGATACTGAGGCATCTGAAGTTATCACAAGAGCAATGGGAGATGTGTCAGACCGAATAGGCCGTCCCACAGATAATGGTCAGATTGGTATAATTGATCCAGATTGCAGATTGATCGGGCTACATCTTTATGATGGACTATTTAAGGTTATTCCATTTGATAACAAAGGCCAACTGAAGGAAGCTTTTAACATCAGGCTCGAGGAGCTTCAAGTTTTAGATATTAAATTCTTGTATGGTTGCCCAAAGCCTACAATTGTTGTTCTATATCAGGATAACAAGGATGCCCGGCATGTCAAAACATATGAGGTGTCCTTGAAAGACAAAGATTTTATTGAAGGGCCATGGGCTCAAAATAATCTTGATAATGGAGCTTCTTTGCTAATACCAGTACCTCCACCACTGTGTGGTGTATTGATTATTGGAGAAGAAACCATCGTTTATTGCAGCGCTTCAGCTTTTAAGGCTATCCCAATTAGACCTTCTATCACAAGAGCATATGGGCGGGTTGATGCTGATGGTTCTCGATATTTGCTTGGGGATCATAATGGGCTTCTTCACCTACTTGTAATCACTCATGAGAAGGAGAAAGTTACCGGACTCAAAATTGAGCTACTGGGGGAAACTTCTATTGCATCAACCATATCATACCTAGACAATGCTTTTGTCTTCATTGGCTCAAGCTACGGAGATTCACAGCTTGTAAAGCTCAATCTCCAGCCTGACACCAAAGGTTCTTATGTGGAAGTTCTAGAGAGATATGTCAATTTAGGACCTATTGTGGACTTCTGTGTTGTTGATCTGGAAAGGCAAGGTCAAGGTCAGGTTGTAACTTGCTCTGGAGCCTATAAGGATGGATCACTTCGTATTGTTCGAAATGGAATTGGCATAAATGAACAGGCGTCTGTGGAACTACAAGGGATCAAAGGAATGTGGTCTCTTAGATCTGCTACTGATGATCCATATGACACATTCTTGGTTGTTAGCTTCATTAGTGAGACACGCGTTTTGGCTATGAACCTTGAGGATGAGCTGGAAGAAACTGAGATAGAAGGCTTCAATTCTCAAGTCCAGACCTTGTTTTGTCATGATGCTGTATACAACCAGCTTGTTCAGGTTACTTCAAATTCTGTTAGATTGGTCAGTTCTACCTCTAGAGATCTGAAAAACGAGTGGTTTGCCCCAGTCGGCTACTCGGTCAATGTTGCAACTGCTAATGCCACTCAGGTACTATTGGCTACTGGGGGTGGCCATCTGGTATACCTAGAAATTGGTGATGGGGTGTTGAATGAAGTAAAATATGCCAAGTTGGATTATGATATCTCGTGCCTGGACATAAATCCAATTGGTGAAAATCCGAACTACAGTAACATTGCAGCAGTTGGAATGTGGACAGACATAAGTGTCAGGATATATTCACTTCCTGACTTGAATCTCATTACAAAGGAACAGCTAGGAGGGGAGATAATTCCTCGTTCTGTTCTGATGTGTTCCTTCGAAGGGATATCTTATCTACTATGTGCTTTGGGAGATGGCCATCTCTTGAATTTTGTATTGAGCATGAGTACTGGTGAGCTGACAGATAGGAAAAAAGTTTCTCTTGGGACACAGCCCATAACACTTCGTACATTCTCATCTAAAGATACTACACATGTCTTTGCTGCCTCCGATAGGCCAACAGTTATTTACAGCAGTAACAAGAAGCTGCTTTATAGCAATGTAAATCTAAAAGAAGTTAGTCATATGTGCCCATTCAATGTTGCAGCTTTTCCAGACAGCCTTGCAATCGCTAAAGAAGGTGAGTTAACAATTGGCACTATTGATGAAATTCAAAAGCTTCACATTCGTTCAATACCCCTTGGGGAGCATGCACGTCGCATCAGCCATCAAGAGCAGACCCGGACATTTGCTCTATGCAGTGTGAAGTATACTCAGTCAAATGCAGATGATCCTGAAATGCATTTTGTCCGCCTGTTGGATGATCAGACATTTGAGTTCATATCAACATATCCCCTTGACCAATTTGAATATGGCTGTTCCATACTAAGCTGCTCCTTTTCTGATGATAGTAATGTGTATTATTGCATTGGAACTGCATATGTGATGCCAGAGGAAAATGAACCTACTAAGGGCCGAATTTTAGTTTTTATAGTTGAAGATGGAAAGCTCCAGCTAATTGCTGAGAAGGAAACTAAGGGAGCTGTCTACTCTCTAAATGCCTTCAATGGGAAACTGCTTGCTGCAATCAATCAGAAGATTCAATTGTACAAGTGGGCTTCGCGTGAGGATGGTGGCAGCCGAGAATTGCAGACAGAATGTGGACACCATGGTCATATATTAGCTCTTTATGTTCAAACACGTGGGGATTTCATTGTTGTTGGTGATTTGATGAAATCCATTTCTCTGCTGATTTTCAAGCATGAAGAGGGTGCTATAGAGGAGCGAGCCAGAGACTATAATGCAAATTGGATGTCAGCTGTTGAGATTCTCGATGATGACATTTATCTTGGTGCTGAGAATAACTTCAACCTTTTCACGGTCAGGAAAAATAGTGAAGGTGCTACAGATGAGGAGCGCAGCCGTCTTGAAGTGGTTGGTGAATACCACCTTGGCGAATTTGTTAATAGGTTTAGACATGGTTCACTTGTCATGCGACTACCAGATTCAGATGTTGGGCAGATACCCACTGTCATATTTGGCACAGTGAATGGTGTTATAGGGGTGATTGCATCACTACCTCATGATCAATATTTATTTTTGGAGAAGCTGCAGACAAACTTACGGAAAGTGATAAAGGGTGTGGGAGGTCTGAGCCATGAGCAGTGGAGGTCGTTTTACAATGAGAAGAAAACAGTAGATGCTAAAAACTTTCTTGATGGAGATTTGATTGAATCATTCCTAGATCTTAGCAGGAATAGGATGGAAGAGATTTCAAAGGCTATGTCAGTTCCAGTTGAGGAACTAATGAAGAGAGTGGAAGAGTTGACAAGGTTGCATTAGTTGAATCTTTAATGGTCTCAACTCTGTAATATTTCACATTTCTTAATTTTTTCTTCTTCTTCTTCTGTGAGGTTGTGATACAAGTTCTTATCCCTATATCTGTACTTATTATCTCATATACTTTTAATAGCTGTTGAATTTTTATTTTAAGTTGAAAAAGAATCATTTGCAAACCCAAATGTCCAATTTTTTGGCTCCCATTTAATTGCATCCTACGGAGTTGATTGCACGA
CDS Sequence
- >Solyc02g021650.3.1
ATGAGTGTATGGAACTACGTGGTTACGGCTCACAAACCAACAAATGTTACACATTCCTGTGTTGGCAATTTCACCGGTCCTCAAGAGCTCAATCTTATCATTGCGAAATGTACTCGAATCGAGATTCATTTACTTACTCCCCAAGGTTTACAGTGCATTTGTCTGCAGCCTATGTTAGATGTGCCAATATATGGGAGGATCGCGACACTTGAGCTTTTTCGTCCTCACGGTGAAACACAAGATCTTCTCTTCATCGCAACAGAGCGATATAAATTCTGTGTCCTTCAATGGGATACTGAGGCATCTGAAGTTATCACAAGAGCAATGGGAGATGTGTCAGACCGAATAGGCCGTCCCACAGATAATGGTCAGATTGGTATAATTGATCCAGATTGCAGATTGATCGGGCTACATCTTTATGATGGACTATTTAAGGTTATTCCATTTGATAACAAAGGCCAACTGAAGGAAGCTTTTAACATCAGGCTCGAGGAGCTTCAAGTTTTAGATATTAAATTCTTGTATGGTTGCCCAAAGCCTACAATTGTTGTTCTATATCAGGATAACAAGGATGCCCGGCATGTCAAAACATATGAGGTGTCCTTGAAAGACAAAGATTTTATTGAAGGGCCATGGGCTCAAAATAATCTTGATAATGGAGCTTCTTTGCTAATACCAGTACCTCCACCACTGTGTGGTGTATTGATTATTGGAGAAGAAACCATCGTTTATTGCAGCGCTTCAGCTTTTAAGGCTATCCCAATTAGACCTTCTATCACAAGAGCATATGGGCGGGTTGATGCTGATGGTTCTCGATATTTGCTTGGGGATCATAATGGGCTTCTTCACCTACTTGTAATCACTCATGAGAAGGAGAAAGTTACCGGACTCAAAATTGAGCTACTGGGGGAAACTTCTATTGCATCAACCATATCATACCTAGACAATGCTTTTGTCTTCATTGGCTCAAGCTACGGAGATTCACAGCTTGTAAAGCTCAATCTCCAGCCTGACACCAAAGGTTCTTATGTGGAAGTTCTAGAGAGATATGTCAATTTAGGACCTATTGTGGACTTCTGTGTTGTTGATCTGGAAAGGCAAGGTCAAGGTCAGGTTGTAACTTGCTCTGGAGCCTATAAGGATGGATCACTTCGTATTGTTCGAAATGGAATTGGCATAAATGAACAGGCGTCTGTGGAACTACAAGGGATCAAAGGAATGTGGTCTCTTAGATCTGCTACTGATGATCCATATGACACATTCTTGGTTGTTAGCTTCATTAGTGAGACACGCGTTTTGGCTATGAACCTTGAGGATGAGCTGGAAGAAACTGAGATAGAAGGCTTCAATTCTCAAGTCCAGACCTTGTTTTGTCATGATGCTGTATACAACCAGCTTGTTCAGGTTACTTCAAATTCTGTTAGATTGGTCAGTTCTACCTCTAGAGATCTGAAAAACGAGTGGTTTGCCCCAGTCGGCTACTCGGTCAATGTTGCAACTGCTAATGCCACTCAGGTACTATTGGCTACTGGGGGTGGCCATCTGGTATACCTAGAAATTGGTGATGGGGTGTTGAATGAAGTAAAATATGCCAAGTTGGATTATGATATCTCGTGCCTGGACATAAATCCAATTGGTGAAAATCCGAACTACAGTAACATTGCAGCAGTTGGAATGTGGACAGACATAAGTGTCAGGATATATTCACTTCCTGACTTGAATCTCATTACAAAGGAACAGCTAGGAGGGGAGATAATTCCTCGTTCTGTTCTGATGTGTTCCTTCGAAGGGATATCTTATCTACTATGTGCTTTGGGAGATGGCCATCTCTTGAATTTTGTATTGAGCATGAGTACTGGTGAGCTGACAGATAGGAAAAAAGTTTCTCTTGGGACACAGCCCATAACACTTCGTACATTCTCATCTAAAGATACTACACATGTCTTTGCTGCCTCCGATAGGCCAACAGTTATTTACAGCAGTAACAAGAAGCTGCTTTATAGCAATGTAAATCTAAAAGAAGTTAGTCATATGTGCCCATTCAATGTTGCAGCTTTTCCAGACAGCCTTGCAATCGCTAAAGAAGGTGAGTTAACAATTGGCACTATTGATGAAATTCAAAAGCTTCACATTCGTTCAATACCCCTTGGGGAGCATGCACGTCGCATCAGCCATCAAGAGCAGACCCGGACATTTGCTCTATGCAGTGTGAAGTATACTCAGTCAAATGCAGATGATCCTGAAATGCATTTTGTCCGCCTGTTGGATGATCAGACATTTGAGTTCATATCAACATATCCCCTTGACCAATTTGAATATGGCTGTTCCATACTAAGCTGCTCCTTTTCTGATGATAGTAATGTGTATTATTGCATTGGAACTGCATATGTGATGCCAGAGGAAAATGAACCTACTAAGGGCCGAATTTTAGTTTTTATAGTTGAAGATGGAAAGCTCCAGCTAATTGCTGAGAAGGAAACTAAGGGAGCTGTCTACTCTCTAAATGCCTTCAATGGGAAACTGCTTGCTGCAATCAATCAGAAGATTCAATTGTACAAGTGGGCTTCGCGTGAGGATGGTGGCAGCCGAGAATTGCAGACAGAATGTGGACACCATGGTCATATATTAGCTCTTTATGTTCAAACACGTGGGGATTTCATTGTTGTTGGTGATTTGATGAAATCCATTTCTCTGCTGATTTTCAAGCATGAAGAGGGTGCTATAGAGGAGCGAGCCAGAGACTATAATGCAAATTGGATGTCAGCTGTTGAGATTCTCGATGATGACATTTATCTTGGTGCTGAGAATAACTTCAACCTTTTCACGGTCAGGAAAAATAGTGAAGGTGCTACAGATGAGGAGCGCAGCCGTCTTGAAGTGGTTGGTGAATACCACCTTGGCGAATTTGTTAATAGGTTTAGACATGGTTCACTTGTCATGCGACTACCAGATTCAGATGTTGGGCAGATACCCACTGTCATATTTGGCACAGTGAATGGTGTTATAGGGGTGATTGCATCACTACCTCATGATCAATATTTATTTTTGGAGAAGCTGCAGACAAACTTACGGAAAGTGATAAAGGGTGTGGGAGGTCTGAGCCATGAGCAGTGGAGGTCGTTTTACAATGAGAAGAAAACAGTAGATGCTAAAAACTTTCTTGATGGAGATTTGATTGAATCATTCCTAGATCTTAGCAGGAATAGGATGGAAGAGATTTCAAAGGCTATGTCAGTTCCAGTTGAGGAACTAATGAAGAGAGTGGAAGAGTTGACAAGGTTGCATTAG
Protein Sequence
- >Solyc02g021650.3.1
MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEETIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDLKNEWFAPVGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCLDINPIGENPNYSNIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISYLLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPEMHFVRLLDDQTFEFISTYPLDQFEYGCSILSCSFSDDSNVYYCIGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH*