Information report for SlCyp1
Gene Details
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Functional Descriptions
- Here, we show that, in tomato, translocation of a phloem-mobile cyclophilin, SlCyp1, from a wild-type scion into a mutant rootstock results in restoration of vascular development and lateral root initiation.
- We show that long-distance trafficking of SlCyp1 is associated with regulation of the shoot-to-root ratio in response to changing light intensities, by modulating root growth.
- SlCyp1 is a key player in the signal transduction pathway that is required for maintaining a physiologically balanced shoot-to-root ratio under the prevailing environmental conditions.
- We conclude that long-distance trafficking of SlCyp1 acts as a rheostat to control the shoot-to-root ratio, by mediating root development to integrate photosynthesis and light intensity with requirements for access to water and mineral nutrients.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 543614
- UniProt accessions: O49877
- EMBL: AF172856 , AJ003137 , LN736308
- EnsemblPlants: Solyc12g088670.2.1
- Gramene: Solyc12g088670.2.1
- KEGG: sly:543614
- GO: GO:0004197 , GO:0005615 , GO:0005764 , GO:0051603
- OMA: WSQGRKN
- InterPro: IPR000118 , IPR000169 , IPR000668 , IPR013128 , IPR013201 , IPR025660 , IPR025661 , IPR037277 , IPR038765 , IPR039417
- PANTHER: PTHR12411
- SUPFAM: SSF54001 , SSF57277
- PROSITE: PS00139 , PS00639 , PS00640
- Gene3D: 2.10.25.160 , 3.90.70.10
- OrthoDB: O49877
- Pfam: PF00112 , PF00396 , PF08246
- SMR: O49877
- CDD: cd02248
- STRING: 4081.O49877
- HOGENOM: CLU_012184_0_1_1
Sequences
cDNA Sequence
- >Solyc12g088670.2.1
AATCCCCTTCTTCCCCAACAATACAGGAAAAAAAAATAATATCGACCAATCATGGCAGCTCACAGCTCAACTCTCACCATATCCATACTTCTCATGCTCATCTTCTCCACCTTATCCTCTGCTTCCGATATGTCAATTATTAGCTACGACGAGACACATATTCACCGTCGTACCGACGATGAAGTCTCGGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGCCTTAGGAGAAAAGGATAAGAGATTTCAGATCTTCAAGGATAACTTGAGATACATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGAACGAAGAGTTCCGGTGACCGGAAAAAGTTATCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAATTGACTGGAGAGAAAAAGGTGTGCTTGTTGGTGTCAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCTGTTGCTGCCATGGAATCAATAAACGCGATAGTCACTGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAGGTCGTACAATGAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATTAAGAATGGAGGAATCGACACTGAAGAAGACTACCCTTACAAAGAACGCAATGGCGTATGTGATCAATATAGGAAAAATGCCAAGGTTGTTAAAATAGATAGCTATGAAGATGTTCCTGTTAATAACGAAAAGGCGTTGCAAAAGGCTGTTGCACATCAACCTGTGAGCATTGCACTTGAAGCTGGTGGCAGAGACTTCCAGCACTACAAATCTGGTATCTTCACTGGAAAATGTGGTACTGCAGTGGATCATGGTGTAGTTATTGCTGGATATGGTACTGAGAATGGCATGGATTATTGGATCGTTAGGAACTCATGGGGAGCTAACTGGGGAGAGAACGGCTACCTCAGAGTCCAGCGTAACGTTGCCAGCTCTAGTGGCTTGTGTGGTTTAGCCATAGAGCCTTCATATCCAGTAAAAACAGGACCAAATCCTCCTAAACCCGCTCCATCTCCTCCATCTCCGGTCAAGCCACCTACAGAGTGTGATGAATATTCTCAATGCGCTGTCGGCACCACTTGCTGCTGTATCCTTCAGTTCCGTAGGTCTTGCTTCTCTTGGGGATGCTGCCCACTTGAAGGAGCCACTTGCTGTGAAGACCACTACAGTTGCTGCCCACACGACTATCCTATCTGCAATGTTCGTCAAGGAACATGCTCAATGAGCAAGGGCAACCCACTGGGAGTGAAGGCAATGAAGCGCATTCTTGCACAACCTATTGGGGCCTTCGGAAATGGAGGAAAGAAGAGCAGTTCTTGAATTCTACAAGCACCAATACTGCGGAATGGGGTGAAAAAGCAGGGACAACAGAGGACGTGAATCGATACATTGATTAACAAAACCTCATTTTTCCAGCAGAAAGGTGTAGAAACAGATGAATGCATTATCAAGATTACAAGATGTTGATTAATGATTTGTATATATTGGATTATTGTTCAACTTTGTCTAATTATTCAGTACATATTCCTTGTTTCTTATTATGAAGACTCCAAGTAATGCTTTTTAGTCTTCCATCTGTACTTGGTTTCAACATTAATTAAAAAAAAGGACTATCTTCTGTACCTTTCATTTA
CDS Sequence
- >Solyc12g088670.2.1
ATGGCAGCTCACAGCTCAACTCTCACCATATCCATACTTCTCATGCTCATCTTCTCCACCTTATCCTCTGCTTCCGATATGTCAATTATTAGCTACGACGAGACACATATTCACCGTCGTACCGACGATGAAGTCTCGGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGCCTTAGGAGAAAAGGATAAGAGATTTCAGATCTTCAAGGATAACTTGAGATACATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGAACGAAGAGTTCCGGTGACCGGAAAAAGTTATCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAATTGACTGGAGAGAAAAAGGTGTGCTTGTTGGTGTCAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCTGTTGCTGCCATGGAATCAATAAACGCGATAGTCACTGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAGGTCGTACAATGAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATTAAGAATGGAGGAATCGACACTGAAGAAGACTACCCTTACAAAGAACGCAATGGCGTATGTGATCAATATAGGAAAAATGCCAAGGTTGTTAAAATAGATAGCTATGAAGATGTTCCTGTTAATAACGAAAAGGCGTTGCAAAAGGCTGTTGCACATCAACCTGTGAGCATTGCACTTGAAGCTGGTGGCAGAGACTTCCAGCACTACAAATCTGGTATCTTCACTGGAAAATGTGGTACTGCAGTGGATCATGGTGTAGTTATTGCTGGATATGGTACTGAGAATGGCATGGATTATTGGATCGTTAGGAACTCATGGGGAGCTAACTGGGGAGAGAACGGCTACCTCAGAGTCCAGCGTAACGTTGCCAGCTCTAGTGGCTTGTGTGGTTTAGCCATAGAGCCTTCATATCCAGTAAAAACAGGACCAAATCCTCCTAAACCCGCTCCATCTCCTCCATCTCCGGTCAAGCCACCTACAGAGTGTGATGAATATTCTCAATGCGCTGTCGGCACCACTTGCTGCTGTATCCTTCAGTTCCGTAGGTCTTGCTTCTCTTGGGGATGCTGCCCACTTGAAGGAGCCACTTGCTGTGAAGACCACTACAGTTGCTGCCCACACGACTATCCTATCTGCAATGTTCGTCAAGGAACATGCTCAATGAGCAAGGGCAACCCACTGGGAGTGAAGGCAATGAAGCGCATTCTTGCACAACCTATTGGGGCCTTCGGAAATGGAGGAAAGAAGAGCAGTTCTTGA
Protein Sequence
- >Solyc12g088670.2.1
MAAHSSTLTISILLMLIFSTLSSASDMSIISYDETHIHRRTDDEVSALYESWLIEHGKSYNALGEKDKRFQIFKDNLRYIDEQNSVPNQSYKLGLTKFADLTNEEYRSIYLGTKSSGDRKKLSKNKSDRYLPKVGDSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDRSYNEGCDGGLMDYAFEFVIKNGGIDTEEDYPYKERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGKCGTAVDHGVVIAGYGTENGMDYWIVRNSWGANWGENGYLRVQRNVASSSGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGGKKSSS*