Gene Details:
- Gene ID: Solyc09g065820
- Gene Symbol: SlbHLH59
- Gene Name: BHLH domain-containing protein
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- An ascorbate quantitative trait locus TFA9 (TOMATO FRUIT ASCORBATEON CHROMOSOME 9) co-localized with SlbHLH59, which promotes high ascorbate accumulation by directly binding to the promoter of structural genes involved in the D-mannose/L-galactose pathway.
- An 8-bp InDel in the promoter of SlbHLH59 influences its expression.
- Phylogenetic analysis revealed that differentially expressed SlbHLH59 alleles were selected during tomato domestication.
Function-related keywords:
Literature:
- Genome-wide association analysis identifies a natural variation in basic helix-loop-helix transcription factor regulating ascorbate biosynthesis via D-mannose/L-galactose pathway in tomato. DOI: 10.1371/journal.pgen.1008149 ; PMID: 31067226
Related News:
Gene Resources:
- NCBI ID: 101243823
- UniProt accessions: A0A3Q7I4G4
Sequences:
cDNA Sequence
- >Solyc09g065820.4.1
TGAAGCAAACAATATATTTAAGCAAAGCTTTAGGTGACTCCCTTTCCTTTATTTTCTTCATGGCTCTCACTGCTCTTTAGAAAGTAGCAAAACACACACACAAACAACCCAAAACACACACTTCCATTTCCATTTTTTGCCTATATATATATATATATATGTAACAAGTACTTGTTAGAGTACTAATTTGTACACCCTCTTATCAATTCCGTTGTAAAGAACACTTTTTTAACTAGTATTTGTTCAATTGAATGCTTTTCTGAGGAATTAAGGTGGTCGAAAACAGCTCCGATCCAAGAAAGATTGAATCTTTATAGTTTCTGCTATGGCTAACAACCCTTCTGAGGGACCTTCTGATGATTTCTTTGACCAAATCTTGGGATTTCCTGCTTACAATGGAGCAGAACCTAATTTGGCGGGAAATGATGCCGGAGCTATACCGCCGGCGATGATGCTCCAGCTTAACTCTGGTGATGGGTCAAGTCAGTTTACTGGAGTGGGTCTTGGGGTTGGTTTAGGTGGTGGGGGTTCCATGGTCATGGTGGGGGTGGTTCTTTTCCTTTAGGGTTGAGTTTAGAACAAGGGAAAGGTGGGTTCTTGAAGATGGATGATGTTTCAGCACCTGGAAGGAGGTTTAGAGATGATGTTGTTGATAGCAGAGCTTCTTCTTCTGTCAAACCTGGTTTTCATGGACAACCGATGCCTTCAATGCCGCATCCCCCTGCAATACGTCCAAGGGTGAGAGCTAGGCGAGGACAAGCTACTGATCCACATAGCATAGCGGAGAGGTTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAGACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAGGTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAGATGAACACCCTTATAGAAAAAGGTGACATAACATGCTAATGACCTTAAAGAATTTTCTTGCAGTGGATGGTTCCTACTTTTATCTATTCAAGTAATATTTAGCTTTTTGTTGAAAAAACAGGGTTCTTTTTTAAAAATATTTATGTATAAAGTAAACCATTTTCTATCATTTATATATTTGAGTAGTTTTGTTCTTCGA
CDS Sequence
- >Solyc09g065820.4.1
ATGGATGATGTTTCAGCACCTGGAAGGAGGTTTAGAGATGATGTTGTTGATAGCAGAGCTTCTTCTTCTGTCAAACCTGGTTTTCATGGACAACCGATGCCTTCAATGCCGCATCCCCCTGCAATACGTCCAAGGGTGAGAGCTAGGCGAGGACAAGCTACTGATCCACATAGCATAGCGGAGAGGTTACGTAGAGAGAGGATAGCAGAAAGAATTAGAGCATTGCAAGAGTTGGTTCCCAGTGTCAATAAGACTGATAGAGCTGTAATGCTTGATGAAATTGTAGATTATATCAAATTCCTACGGCTGCAAGTGAAGGTGTTGAGCATGAGTAGGTTAGGAGGAGCTGGTGCAGTAGCACCACTTGTTACAGACATTCCAATATCATCAGTAGAGGAAGAGAGCAGTGAAGGTGGAAATAATAACCAACCAGCTTGGGAAAAGTGGTCAAGTGATGGCACAGAAAGGCAAGTGGCTAAACTCATGGAAGAAAATGTTGGTGCTGCAATGCAATTTCTTCAGTCTAAAGCACTATGTATAATGCCTATTTCTCTTGCATCAGCAATTTATCACTCTCAGCCACCAGATACATCAAGTCTTGTTAAGCCAGAAACAAATCCTCCTTCATAG
Protein Sequence
- >Solyc09g065820.4.1
MDDVSAPGRRFRDDVVDSRASSSVKPGFHGQPMPSMPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAVMLDEIVDYIKFLRLQVKVLSMSRLGGAGAVAPLVTDIPISSVEEESSEGGNNNQPAWEKWSSDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHSQPPDTSSLVKPETNPPS*