Information report for SlAP2a
Gene Details
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Functional Descriptions
- A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening.
- Here we describe an APETALA2 transcription factor (SlAP2a) identified through transcriptional profiling of fruit maturation that is induced during, and which negatively regulates, tomato fruit ripening.
- SlAP2a, a homolog of SlAP2c, acts upstream of SlAP2c and alleviates the SlAP2c-induced repression of lycopene biosynthesis genes by inhibiting SlAP2c transcription during fruit ripening.
- Identified a transcriptional cascade mediated by AP2 family members that regulates lycopene biosynthesis during fruit ripening in tomato, laying the foundation for the manipulation of carotenoid metabolism in plants.
- RNAi repression of SlAP2a results in fruits that over-produce ethylene, ripen early and modify carotenoid accumulation profiles by altering carotenoid pathway flux.
- These results suggest that SlAP2a functions during normal tomato fruit ripening as a modulator of ripening activity and acts to balance the activities of positive ripening regulators.
Functional Keywords
Literature and News
- A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening. DOI: 10.1111/j.1365-313X.2010.04384.x ; PMID: 21143675
- A transcriptional cascade mediated by two APETALA2 family members orchestrates carotenoid biosynthesis in tomato. DOI: 10.1111/jipb.13650 ; PMID: 38546046
Gene Resources
- NCBI ID: 100191138
- UniProt accessions: B2ZP48
- EMBL: EU677382
- EnsemblPlants: Solyc03g044300.3.1
- Gramene: Solyc03g044300.3.1
- KEGG: sly:100191138
- GO: GO:0003677 , GO:0003700 , GO:0005634
- OMA: HWFGVKF
- InterPro: IPR001471 , IPR016177 , IPR036955
- PANTHER: PTHR32467 , PTHR32467:SF216
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- OrthoDB: B2ZP48
- Pfam: PF00847
- SMR: B2ZP48
- CDD: cd00018
- STRING: 4081.B2ZP48
- HOGENOM: CLU_035462_4_0_1
Sequences
cDNA Sequence
- >Solyc11g069190.2.1
ATGGAAATTGATCTGAATCATGCATTAGTGAGTGAAGTGGAGAAGAATGTATGTTGTAATGAAGAATGTGATAAAGGGGGTGGTGGGGGTTGTGTTAATTGCTCTTTGTACACTTCCACTACTTCTTCTTGTTCTTCAAATGTATCTTCATCTTCTTCACTTGCTCTTACCTCAATTTATAAAGAGCTTTGGCATGCTTGTGCTGGTCCTCTTACTAGTTTACCCAAGAAAGGAAATGTAGTGGTTTATTTCCCTCAAGGTCATATGGAAGAAGCTGTTTCTGCTTTTCCATTTTCACCTGTCAAGATTGATTTACCAACTTTTGGTCTTCAGCCTCAGATCTTCTGTAGAGTGGAAGATGTCCAATTGCTTGCAAATAAGGAAAATGATGAGGTGTATACACAGCTCACTCTTCTTCCTCTTCCAGAGTCAATGGCTATAAGCTTAGAGGGGAAAGAACATGAAGATTCGGGGACGGATGAGGAAGGGAATGGAGTCAATCCAGGGAAATCAGCTTCTCACATGTTCTGTAAAACGCTGACTGCTTCGGATACCACCACCCATGGTGGCTTTTCAGTTCCCCGTCGAGCAGCTGAAGACTGCTTCCCCCCTCTGGATTACAAAGAGCAAAGACCCTCACAGGAGCTAATTGCTAAGGATCTGCACGGAGTAGAGTGGAAATTTCGTCACATTTATAGAGGCCAGCCAAGGCGACATTTGCTCACTACTGGATGGAGTATCTTTGTCAGCCAAAAGAATCTTGTCTCAGGGGATGCAGTTCTCTTCTTGAGGGGAGAAGGTGGAAATCTCAGACTGGGAATAAGAAGAGCTGCAAGACCTAGAAATGGGCTTCCTGAATCGATAATCAAAAGTCAATATTCTGGACCGGATGTTCTTTCGTCAGTTGCTACAGCCCTATCAGCAAAGAGCACTTTCCATGTTTTCTATAGCCCAAGGGCAAGTCATGCTGATTTCGTTGTACCTTACCAAAAGTACGTGAAAGCCATCAACTCTCGGATTCCTGTTGGGACAAGATTTAAAATGAAATTTGATTTGGATGATTCACCTGAAAGAAGGTACAGCGGTGTAGTGACTGGGATAAGCGATATGGATCCCTTTAGATGGCCCAACTCTAAATGGAGATGCTTGATGGTCAGATGGGATGAAGATATAATGAGTAATCATCAGGAACGGGTTTCTCCTTGGGAAATTGATTCTTCAGTTTCCTTACCACCACTGAGCATTCAGTCCTCACCAAGACTGAAGAAACTGCGGACTAGTCAGCAGGCACCATCAGTACTGGACAGCCATTTTGCTGGAGGGAGTGCTCTTTTAGACTTTGAGGAGTCAATAAGATCCTCCAAGGTCTTGCAAGGTCAAGAAAATTTAGGTCTGATATCACCTCCCTATGGTTGTGATAAACCAGTCCGCCCACTGGATTTCGAGCTGCAAAGAGTAGCTCGTCACAATCTCATGCCAAATGGTGTAGAGAACATTATTGTTGGTGACTTTGTGAAAACTCAGCCTCCAACAACCTACACAGGCTTTCTGGAATCCAATAGGTTTCCAAAGGTCTTGCAAGGTCAAGAAATTTGCTCGTTGAGATCCCTTACTGGAAAAGGTGATGTTAATTTTGGTGCTTGGGGAAAACCTGAATTTGGTTGCAATGTTTTCGGCACATATCAGAGGCCGAGAGCCAATTTCTATCCTCTCGCTTCTGAAGGGGCGAGGAATGTGTTTTTACCTTACAATGCGATGTATAGAGCTGGACAAGATCCCGTGGTTCCCTCCTACAGTACTAATTTCCAAAGAGAAAATCCTACCTTGAACCAGAATTCAATCCAAAATGTGGTTAGGAGGGAAGAAGTTGGAATGCCAAAGTTTGTAAATGAGCAGAGGCCACCGGAGATGTCTAAAGTGTCCATTCCAGAGAACCATTTCAAGAATGAAAATGACGACTCCTTCAATGCACAGGCTCCATGTAAACTGTTTGGCTTTTCCTTGACGAAAGAACCATCTACTCCTAGCTCGCAGAGTTCTGGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGCAGCTTGGTTGGACGAGCCATTGATCTCTCGAGATTGAATGGCTATGACGACTTGCTGGTTGAGTTGGAGAGGCTTTTCAACATGGAAGACCTCTTAAGAGATCCCAACAAGGGGTGGCGAATCTTGTACACTGACAGTGAGAATGACATGATGGTTGTCGGAGATGATCCATGGCATGAGTTCTGTGAGGTAGTATCCAAGATCCATATATACACTCAAGAAGAAGTGGAGAAAATGACTATTGAGGGGATCAGCGATGACACTCAAAGTTGTTTGGAGGAGGCACCAGCAATCATGGATGTCTCAAAGTCTTCTTCAGTTGGCCAGCCTGATTCATCTCCAACTGTAATCAGGATTTGAATAAAGTTTGAATGGAGTACCTATGA
CDS Sequence
- >Solyc11g069190.2.1
ATGGAAATTGATCTGAATCATGCATTAGTGAGTGAAGTGGAGAAGAATGTATGTTGTAATGAAGAATGTGATAAAGGGGGTGGTGGGGGTTGTGTTAATTGCTCTTTGTACACTTCCACTACTTCTTCTTGTTCTTCAAATGTATCTTCATCTTCTTCACTTGCTCTTACCTCAATTTATAAAGAGCTTTGGCATGCTTGTGCTGGTCCTCTTACTAGTTTACCCAAGAAAGGAAATGTAGTGGTTTATTTCCCTCAAGGTCATATGGAAGAAGCTGTTTCTGCTTTTCCATTTTCACCTGTCAAGATTGATTTACCAACTTTTGGTCTTCAGCCTCAGATCTTCTGTAGAGTGGAAGATGTCCAATTGCTTGCAAATAAGGAAAATGATGAGGTGTATACACAGCTCACTCTTCTTCCTCTTCCAGAGTCAATGGCTATAAGCTTAGAGGGGAAAGAACATGAAGATTCGGGGACGGATGAGGAAGGGAATGGAGTCAATCCAGGGAAATCAGCTTCTCACATGTTCTGTAAAACGCTGACTGCTTCGGATACCACCACCCATGGTGGCTTTTCAGTTCCCCGTCGAGCAGCTGAAGACTGCTTCCCCCCTCTGGATTACAAAGAGCAAAGACCCTCACAGGAGCTAATTGCTAAGGATCTGCACGGAGTAGAGTGGAAATTTCGTCACATTTATAGAGGCCAGCCAAGGCGACATTTGCTCACTACTGGATGGAGTATCTTTGTCAGCCAAAAGAATCTTGTCTCAGGGGATGCAGTTCTCTTCTTGAGGGGAGAAGGTGGAAATCTCAGACTGGGAATAAGAAGAGCTGCAAGACCTAGAAATGGGCTTCCTGAATCGATAATCAAAAGTCAATATTCTGGACCGGATGTTCTTTCGTCAGTTGCTACAGCCCTATCAGCAAAGAGCACTTTCCATGTTTTCTATAGCCCAAGGGCAAGTCATGCTGATTTCGTTGTACCTTACCAAAAGTACGTGAAAGCCATCAACTCTCGGATTCCTGTTGGGACAAGATTTAAAATGAAATTTGATTTGGATGATTCACCTGAAAGAAGGTACAGCGGTGTAGTGACTGGGATAAGCGATATGGATCCCTTTAGATGGCCCAACTCTAAATGGAGATGCTTGATGGTCAGATGGGATGAAGATATAATGAGTAATCATCAGGAACGGGTTTCTCCTTGGGAAATTGATTCTTCAGTTTCCTTACCACCACTGAGCATTCAGTCCTCACCAAGACTGAAGAAACTGCGGACTAGTCAGCAGGCACCATCAGTACTGGACAGCCATTTTGCTGGAGGGAGTGCTCTTTTAGACTTTGAGGAGTCAATAAGATCCTCCAAGGTCTTGCAAGGTCAAGAAAATTTAGGTCTGATATCACCTCCCTATGGTTGTGATAAACCAGTCCGCCCACTGGATTTCGAGCTGCAAAGAGTAGCTCGTCACAATCTCATGCCAAATGGTGTAGAGAACATTATTGTTGGTGACTTTGTGAAAACTCAGCCTCCAACAACCTACACAGGCTTTCTGGAATCCAATAGGTTTCCAAAGGTCTTGCAAGGTCAAGAAATTTGCTCGTTGAGATCCCTTACTGGAAAAGGTGATGTTAATTTTGGTGCTTGGGGAAAACCTGAATTTGGTTGCAATGTTTTCGGCACATATCAGAGGCCGAGAGCCAATTTCTATCCTCTCGCTTCTGAAGGGGCGAGGAATGTGTTTTTACCTTACAATGCGATGTATAGAGCTGGACAAGATCCCGTGGTTCCCTCCTACAGTACTAATTTCCAAAGAGAAAATCCTACCTTGAACCAGAATTCAATCCAAAATGTGGTTAGGAGGGAAGAAGTTGGAATGCCAAAGTTTGTAAATGAGCAGAGGCCACCGGAGATGTCTAAAGTGTCCATTCCAGAGAACCATTTCAAGAATGAAAATGACGACTCCTTCAATGCACAGGCTCCATGTAAACTGTTTGGCTTTTCCTTGACGAAAGAACCATCTACTCCTAGCTCGCAGAGTTCTGGTAAGAGGAGCTGTACTAAGGTTCACAAACAAGGCAGCTTGGTTGGACGAGCCATTGATCTCTCGAGATTGAATGGCTATGACGACTTGCTGGTTGAGTTGGAGAGGCTTTTCAACATGGAAGACCTCTTAAGAGATCCCAACAAGGGGTGGCGAATCTTGTACACTGACAGTGAGAATGACATGATGGTTGTCGGAGATGATCCATGGCATGAGTTCTGTGAGGTAGTATCCAAGATCCATATATACACTCAAGAAGAAGTGGAGAAAATGACTATTGAGGGGATCAGCGATGACACTCAAAGTTGTTTGGAGGAGGCACCAGCAATCATGGATGTCTCAAAGTCTTCTTCAGTTGGCCAGCCTGATTCATCTCCAACTGTAATCAGGATTTGA
Protein Sequence
- >Solyc11g069190.2.1
MEIDLNHALVSEVEKNVCCNEECDKGGGGGCVNCSLYTSTTSSCSSNVSSSSSLALTSIYKELWHACAGPLTSLPKKGNVVVYFPQGHMEEAVSAFPFSPVKIDLPTFGLQPQIFCRVEDVQLLANKENDEVYTQLTLLPLPESMAISLEGKEHEDSGTDEEGNGVNPGKSASHMFCKTLTASDTTTHGGFSVPRRAAEDCFPPLDYKEQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGEGGNLRLGIRRAARPRNGLPESIIKSQYSGPDVLSSVATALSAKSTFHVFYSPRASHADFVVPYQKYVKAINSRIPVGTRFKMKFDLDDSPERRYSGVVTGISDMDPFRWPNSKWRCLMVRWDEDIMSNHQERVSPWEIDSSVSLPPLSIQSSPRLKKLRTSQQAPSVLDSHFAGGSALLDFEESIRSSKVLQGQENLGLISPPYGCDKPVRPLDFELQRVARHNLMPNGVENIIVGDFVKTQPPTTYTGFLESNRFPKVLQGQEICSLRSLTGKGDVNFGAWGKPEFGCNVFGTYQRPRANFYPLASEGARNVFLPYNAMYRAGQDPVVPSYSTNFQRENPTLNQNSIQNVVRREEVGMPKFVNEQRPPEMSKVSIPENHFKNENDDSFNAQAPCKLFGFSLTKEPSTPSSQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYDDLLVELERLFNMEDLLRDPNKGWRILYTDSENDMMVVGDDPWHEFCEVVSKIHIYTQEEVEKMTIEGISDDTQSCLEEAPAIMDVSKSSSVGQPDSSPTVIRI*