Information report for Sl5R-1
Gene Details
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Functional Descriptions
- A typical NLR gene, Sl5R-1 , which regulates Tomato spotted wilt virus resistance, was fine mapped to a region less than 145 kb in the tomato genome.
- Sl5R-1 is a key gene in the regulation of TSWV resistance.
- The qRT-PCR and virus-induced gene silencing approach results confirmed that Sl5R-1 is a functional resistance gene for TSWV.
- Analysis of the Sl5R-1 promoter region revealed that there is a SlTGA9 transcription factor binding site caused by a base deletion in resistant plants, and its expression level was significantly up-regulated in infected resistant plants.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 101263313
- UniProt accessions: A0A3Q7GER9
- AlphaFoldDB: A0A3Q7GER9
- EnsemblPlants: Solyc05g009740.1.1
- Gramene: Solyc05g009740.1.1
- KEGG: sly:101263313
- GO: GO:0016020 , GO:0043531 , GO:0098542
- OMA: CMDLFSL
- InterPro: IPR002182 , IPR027417 , IPR032675 , IPR036388 , IPR042197 , IPR044974
- PANTHER: PTHR23155 , PTHR23155:SF1228
- SUPFAM: SSF52058 , SSF52540
- Gene3D: 1.10.10.10 , 1.10.8.430 , 3.40.50.300 , 3.80.10.10
- OrthoDB: A0A3Q7GER9
- Pfam: PF00931 , PF23559
- SMR: A0A3Q7GER9
Sequences
cDNA Sequence
- >Solyc05g009740.1.1
ATGGAGAAGATCGAGCTAACTACTTCTTTTTCATCGAATGATGAGGAATTTGTGGGGTTTAAGGAGGATGTAAAACAGATCATTCAGAAATTGACTCGAGGAACAAAAGAACGCGAAGTTATATCAATTGTTGGAATGGCAGGACTAGGCAAAACAACTTTGGCTAGAAAGGTGTACAACAGTCATTCTATTGCTGAACACTTTGATGCTCGCGCATTTTGTATTGTTTCACAAACATATAGCACCAGAAAGCTATTGATTGATATTCTTAAACAAGTCACTGGTGAAAAACATGACATGATCCGAGAGGATGAGGACGTTGCAGATATGTTGAGGAAGGAACTCTATTTCAAGAGATACCTCATTGTTTTAGATGATATGTGGAAATATCAGACATGGGAAGACTTGCAATTATGTTTCCCTTGTGTGGGAAGAGGAAGTAGAATTATGGTAACAACCCGCGTTCAAGAGGTTGCTACTAAGATGAGTGATACTTATTCTCTTCGATTCCTAACAGATGAAGAGAGTTGGGAGTTATTGCAAAAGAAGGTATTTAAACGCGGGAGGGTTCCCTTAGAGCTAAAAGAAGCAGGATTTGAAGTTGCTCGAAACTGTAAGGGACTGCCTCTTGTGATTGTGTTGAATGCTGGTATTATCGCACAAAAGGAAAGGTGTGTCTCCGTGTGGGAAGAGTTTGCAAAGGATTTAAGTTCTCTTGGTTTAGAAGAGCAGAGTAGGAAGGCAGTTCAATCAAGCTATGACTATTTACGCGATCATCTAAAGCATTGTCTTCTATACGTTGGATACTTCCCCGAAGACTACAACATTCCAGTCTCCGATTTGCTAAACTTATGGATAGCTGAAGAGTTAGTACCCAACATCAACGACACGGAGAACCTAGAAAAATCATCTAAAGATTGCTTGATTGATCTAGTCAATAGAAGCCTTCTAATAGTTTCTAAAAGGCGATCAAATGGTGATATAAAATACTGCATGGTTCATGATCTGATTCGCGAGTTTTGCTCAAGGGAACTTGAAGAAGAAGATTTTAAACAACGATTTGAGTCATACAACTCATCCTCTGAAGTACCTTCGTCTCCCAATGATCCAGCTCGGCTATGCATGTATATCCATGACAACCTTGTTAATCATTTGGAGTTGAACGGATATTCACTGAATGGGATCTCCGAAGAAAAGGAGTCTCTTGAATTCATTGCTCATCCGCGATTCTATTCATCAAAATGTATGGATCTTTTCTCTCTACTTCATAAGTTGAGGCTTATTAGGGTGTTGCATTTGTTGGATATCAATATGGAAAGTAGTTGGGAATTTCAAAAATCTCCGGCTTCCGCACTTGAATCACTCACTCACTTGAAATACCTCGCGATTTTTGTCAAAAAATTTGACTTCAAGTGGGTGTCGCACATGATCAATCTACAAACTTTACGTGTTCATTCACATCAACGTATAAAGACATCACCGGACATTTGGAAAATGAAGAAGCTAAGGCATGTTGATATTAGTGAATTTTCCTTTTTATGGGTAGACGATGAGCAAGAAAAATCTTCGCAACATGTTCTGTTAGACAACTTAAAGACTTTTGGCAAATGCCGTGTATCTCTTGCTGATATGAATCGTAAGTTCTGGTGGAGGTTTCCGAATCTTGAAGAACTCAGTCTCTCCGTTGTTAATTTTCATGGCATGCCTAACCATTCTCTGTTTCCTACACCGGAAATTCATAACCGCCTTCAATCTCTTGAAATAAGTTTCCCCATTGGATTATCAACGCCAACCGGAGGGTTCAAATCAGTTTTCCCTATGAATATGAGGTTGTTATCACTTGCTGGCATCTCATTGACAGAACAAGTGGTTACAAGTATTGCAGCATTGCAAAAACTTGAGACTCTCAAGTTATTTTTTATACATTTCCCCAACAACAATACGCGATGGGATGTTACTGATCGAGAGTTCAAAGTCTTGAAATATTTGAAACTAGAGCTAGTCGATATGAATCAATGGGAGGCCTCGGATACATCATTTCCCATGCTTGAGAAACTCGTCATAAAAGATTGTGAACAACTTGAGGAGATTCCTTCTAGCTTCGCGGATATTTCAACACTACGATTGATTAAATTGATCAATTGTAGTGAGTCAGTTCGCGAGTCAGCTCAAAGAATTAAACGGGATGTAGAAGACACTGAAGGAGTTGAGAGACTCCAACTTCATATCCCCAAGAACTACTAA
CDS Sequence
- >Solyc05g009740.1.1
ATGGAGAAGATCGAGCTAACTACTTCTTTTTCATCGAATGATGAGGAATTTGTGGGGTTTAAGGAGGATGTAAAACAGATCATTCAGAAATTGACTCGAGGAACAAAAGAACGCGAAGTTATATCAATTGTTGGAATGGCAGGACTAGGCAAAACAACTTTGGCTAGAAAGGTGTACAACAGTCATTCTATTGCTGAACACTTTGATGCTCGCGCATTTTGTATTGTTTCACAAACATATAGCACCAGAAAGCTATTGATTGATATTCTTAAACAAGTCACTGGTGAAAAACATGACATGATCCGAGAGGATGAGGACGTTGCAGATATGTTGAGGAAGGAACTCTATTTCAAGAGATACCTCATTGTTTTAGATGATATGTGGAAATATCAGACATGGGAAGACTTGCAATTATGTTTCCCTTGTGTGGGAAGAGGAAGTAGAATTATGGTAACAACCCGCGTTCAAGAGGTTGCTACTAAGATGAGTGATACTTATTCTCTTCGATTCCTAACAGATGAAGAGAGTTGGGAGTTATTGCAAAAGAAGGTATTTAAACGCGGGAGGGTTCCCTTAGAGCTAAAAGAAGCAGGATTTGAAGTTGCTCGAAACTGTAAGGGACTGCCTCTTGTGATTGTGTTGAATGCTGGTATTATCGCACAAAAGGAAAGGTGTGTCTCCGTGTGGGAAGAGTTTGCAAAGGATTTAAGTTCTCTTGGTTTAGAAGAGCAGAGTAGGAAGGCAGTTCAATCAAGCTATGACTATTTACGCGATCATCTAAAGCATTGTCTTCTATACGTTGGATACTTCCCCGAAGACTACAACATTCCAGTCTCCGATTTGCTAAACTTATGGATAGCTGAAGAGTTAGTACCCAACATCAACGACACGGAGAACCTAGAAAAATCATCTAAAGATTGCTTGATTGATCTAGTCAATAGAAGCCTTCTAATAGTTTCTAAAAGGCGATCAAATGGTGATATAAAATACTGCATGGTTCATGATCTGATTCGCGAGTTTTGCTCAAGGGAACTTGAAGAAGAAGATTTTAAACAACGATTTGAGTCATACAACTCATCCTCTGAAGTACCTTCGTCTCCCAATGATCCAGCTCGGCTATGCATGTATATCCATGACAACCTTGTTAATCATTTGGAGTTGAACGGATATTCACTGAATGGGATCTCCGAAGAAAAGGAGTCTCTTGAATTCATTGCTCATCCGCGATTCTATTCATCAAAATGTATGGATCTTTTCTCTCTACTTCATAAGTTGAGGCTTATTAGGGTGTTGCATTTGTTGGATATCAATATGGAAAGTAGTTGGGAATTTCAAAAATCTCCGGCTTCCGCACTTGAATCACTCACTCACTTGAAATACCTCGCGATTTTTGTCAAAAAATTTGACTTCAAGTGGGTGTCGCACATGATCAATCTACAAACTTTACGTGTTCATTCACATCAACGTATAAAGACATCACCGGACATTTGGAAAATGAAGAAGCTAAGGCATGTTGATATTAGTGAATTTTCCTTTTTATGGGTAGACGATGAGCAAGAAAAATCTTCGCAACATGTTCTGTTAGACAACTTAAAGACTTTTGGCAAATGCCGTGTATCTCTTGCTGATATGAATCGTAAGTTCTGGTGGAGGTTTCCGAATCTTGAAGAACTCAGTCTCTCCGTTGTTAATTTTCATGGCATGCCTAACCATTCTCTGTTTCCTACACCGGAAATTCATAACCGCCTTCAATCTCTTGAAATAAGTTTCCCCATTGGATTATCAACGCCAACCGGAGGGTTCAAATCAGTTTTCCCTATGAATATGAGGTTGTTATCACTTGCTGGCATCTCATTGACAGAACAAGTGGTTACAAGTATTGCAGCATTGCAAAAACTTGAGACTCTCAAGTTATTTTTTATACATTTCCCCAACAACAATACGCGATGGGATGTTACTGATCGAGAGTTCAAAGTCTTGAAATATTTGAAACTAGAGCTAGTCGATATGAATCAATGGGAGGCCTCGGATACATCATTTCCCATGCTTGAGAAACTCGTCATAAAAGATTGTGAACAACTTGAGGAGATTCCTTCTAGCTTCGCGGATATTTCAACACTACGATTGATTAAATTGATCAATTGTAGTGAGTCAGTTCGCGAGTCAGCTCAAAGAATTAAACGGGATGTAGAAGACACTGAAGGAGTTGAGAGACTCCAACTTCATATCCCCAAGAACTACTAA
Protein Sequence
- >Solyc05g009740.1.1
MEKIELTTSFSSNDEEFVGFKEDVKQIIQKLTRGTKEREVISIVGMAGLGKTTLARKVYNSHSIAEHFDARAFCIVSQTYSTRKLLIDILKQVTGEKHDMIREDEDVADMLRKELYFKRYLIVLDDMWKYQTWEDLQLCFPCVGRGSRIMVTTRVQEVATKMSDTYSLRFLTDEESWELLQKKVFKRGRVPLELKEAGFEVARNCKGLPLVIVLNAGIIAQKERCVSVWEEFAKDLSSLGLEEQSRKAVQSSYDYLRDHLKHCLLYVGYFPEDYNIPVSDLLNLWIAEELVPNINDTENLEKSSKDCLIDLVNRSLLIVSKRRSNGDIKYCMVHDLIREFCSRELEEEDFKQRFESYNSSSEVPSSPNDPARLCMYIHDNLVNHLELNGYSLNGISEEKESLEFIAHPRFYSSKCMDLFSLLHKLRLIRVLHLLDINMESSWEFQKSPASALESLTHLKYLAIFVKKFDFKWVSHMINLQTLRVHSHQRIKTSPDIWKMKKLRHVDISEFSFLWVDDEQEKSSQHVLLDNLKTFGKCRVSLADMNRKFWWRFPNLEELSLSVVNFHGMPNHSLFPTPEIHNRLQSLEISFPIGLSTPTGGFKSVFPMNMRLLSLAGISLTEQVVTSIAALQKLETLKLFFIHFPNNNTRWDVTDREFKVLKYLKLELVDMNQWEASDTSFPMLEKLVIKDCEQLEEIPSSFADISTLRLIKLINCSESVRESAQRIKRDVEDTEGVERLQLHIPKNY*