Information report for Sl-IAA27
Gene Details
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Functional Descriptions
- Phenotypes Associated with Down-Regulation of Sl-IAA27 Support Functional Diversity Among Aux/IAA Family Members in Tomato.
- Sl-IAA27 displays a distinct behavior compared with most Aux/IAA genes regarding the regulation of its expression by auxin, and the Sl-IAA27-encoded protein harbors a unique motif of unknown function also present in Sl-IAA9 and remarkably conserved in monocot and dicot species.
- Silencing of Sl-IAA27 results in higher auxin sensitivity, altered root development and reduced Chl content in leaves. Both ovule and pollen display a dramatic loss of fertility in Sl-IAA27 down-regulated lines, and the internal anatomy of the flower and the fruit are modified, with an enlarged placenta in smaller fruits.
- In line with the reduced Chl content in Sl-IAA27 RNA interference (RNAi) leaves, genes involved in Chl synthesis display lower expression at the level of transcript accumulation.
- ven though Sl-IAA27 is closely related to Sl-IAA9 in terms of sequence homology and the encoded proteins share common structural features, the data indicate that the two genes regulate tomato fruit initiation and development in a distinct manner.
Functional Keywords
- root , development , auxin , fertility , flower , pollen , down-regulated-genes , pollen-development , root-development , root-initiation , iaa , flower-development , ovule , pollen-fertility , protein
Literature and News
Gene Resources
- NCBI ID: 543541
- UniProt accessions: G9HPX1
- EMBL: JN379450
- EnsemblPlants: Solyc03g120500.3.1
- Gramene: Solyc03g120500.3.1
- KEGG: sly:543541
- GO: GO:0005634 , GO:0006355 , GO:0009734
- OMA: PRAINKC
- InterPro: IPR003311 , IPR033389 , IPR053793
- PANTHER: PTHR31734 , PTHR31734:SF157
- SUPFAM: SSF54277
- PROSITE: PS51745
- Gene3D: 3.10.20.90
- OrthoDB: G9HPX1
- Pfam: PF02309
- SMR: G9HPX1
- STRING: 4081.G9HPX1
- HOGENOM: CLU_049393_1_2_1
Sequences
cDNA Sequence
- >Solyc03g120500.4.1
CTTTTCTGCATCAACAAAATTAAACAACCTCTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAGTGACTGAAAGACTAACCGTCCAAAGGGTTTCTACAACGTCAACCATCCTTTTTCTGCCCTGTTTGTATCTGGAATTAGACTAGATGTGTAGCATCCCCTGAAAGGGAGAGAGCTGGTTTAAGAAAATATAACCGGTCAAAAATTGTACTGTGGCTAGTGTCTTTTGAGTGGCAATTTTTGCTTGCACATGCAACCTGCAAGTTTATTTGCAAACATACATTAATTTTTAAGCATATAACCAACCAACTATTATTCTGATGAAACA
CDS Sequence
- >Solyc03g120500.4.1
CTTTTCTGCATCAACAAAATTAAACAACCTCTTCCTTTCTCTTGTAACTTTTTCTTTAAAAAAAGTTTTTTTCTTTTTCATCTCTTCCATAGTTTCTTGAATTCTTGTAGAGAAATTCATCTTGTCTGTTTACTAATTTGTGCTCAACTTTCCATGTCTGTACCATTAGAACATGATTATATAGGTTTATCAGAACCTTCTTTAATGGAAAGAAGTTCTGATAAGATTTCTTCTTCTTCTTCTTCCTCTGTTCTAAACCTTAAGGAGACTGAGCTGAGACTTGGGTTGCCTGGTTCTGAGTCTCATGGGGTTTCTCTTTTTGGCAAAGATTTGGACCCTTTAAGCAATTTTACATCAAGAACAAAAAGGGGTTTTTCTGATGCAATTGATGCATCTGGAAAATCGGATTTGTCTATTAATTGCAGATCTGAAGCTGATAGGGAAAACGGGAACTTGTTGTTTTCCCCAAAAAGAGGGAATGGAGGTTCAAACCCTGTTGAAGAAAAAAAGCCTATCCCTCATACTTCAAAGGCACAAGTGGTAGGATGGCCACCAATTAGATCATTCAGGAAAAATACACTGGCTACTAAGAAAAATGATGATGAAGGGAGAACAGGTTCAAGTTGCCTTTATGTTAAGGTTAGCATGGATGGTGCTCCATATCTGAGGAAAGTTGATATCAAAACTTACAGTAACTATGCAGCGCTCTCATCAGCACTTGAAAAGATGTTCAGCTGCTTTAGTATTGGTCAGTGTGCCAGTGATAAGATTCCAGGGCAAGAGAAGCTCAGTGAAAGTCACTTGATGGATCTTCTCAATGGTTCTGAGTATGTGCTGACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCTTGGGAGATGTTCATAGACTCATGCAAGAGATTGCGGATCATGAAGAGCTCAGAGGCAATTGGGCTAGCTCCAAGGGCCATAAATAAGTGCAAGAACCAAAATTAG
Protein Sequence
- >Solyc03g120500.4.1
LFCINKIKQPLPFSCNFFFKKSFFLFHLFHSFLNSCREIHLVCLLICAQLSMSVPLEHDYIGLSEPSLMERSSDKISSSSSSSVLNLKETELRLGLPGSESHGVSLFGKDLDPLSNFTSRTKRGFSDAIDASGKSDLSINCRSEADRENGNLLFSPKRGNGGSNPVEEKKPIPHTSKAQVVGWPPIRSFRKNTLATKKNDDEGRTGSSCLYVKVSMDGAPYLRKVDIKTYSNYAALSSALEKMFSCFSIGQCASDKIPGQEKLSESHLMDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSEAIGLAPRAINKCKNQN*