Information report for RIN-MC
Gene Details
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Functional Descriptions
- The RIN-MC Fusion of MADS-Box Transcription Factors Has Transcriptional Activity and Modulates Expression of Many Ripening Genes.
- The RIN-MC fusion gene was shown to be translated into a chimeric transcription factor that was localized to the nucleus and was capable of protein interactions with other MADS-box factors.
- These results indicated that tomato RIN-MC fusion plays a negative role in ripening and encodes a chimeric transcription factor that modulates the expression of many ripening genes, thereby contributing to the rin mutant phenotype.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 778278
- UniProt accessions: Q8S4L3
- EMBL: AF448523
- EnsemblPlants: Solyc05g012020.3.1
- Gramene: Solyc05g012020.3.1
- KEGG: sly:778278
- GO: GO:0000978 , GO:0000981 , GO:0005634 , GO:0006357 , GO:0045944 , GO:0046983
- InterPro: IPR002100 , IPR002487 , IPR033896 , IPR036879 , IPR050142
- PANTHER: PTHR48019
- SUPFAM: SSF55455
- PROSITE: PS00350 , PS50066 , PS51297
- Gene3D: 3.40.1810.10
- OrthoDB: Q8S4L3
- Pfam: PF00319 , PF01486
- SMR: Q8S4L3
- CDD: cd00265
Sequences
cDNA Sequence
- >Solyc05g012020.4.1
ATATTATCGAAGCAAACATAAATGTCTAATTCAAGCCTCGATAAATGAAAAAAATAATCTAATTTGAACACCGCAACTTTCTTTTAAATGGGCCCTCCACGACACTAATCTAGATTAATCGAAATAATAAATTCTGAAATACCTCATGATATATAGTAAAACAAAAAAGTCTTTATTCTCTTTTCTTCTTGACTAGGGAACCATTAGATTTTAAAGACATTAAATCTATTACCCTTACCCTAAGAATAAGAAGATGTAAAGTAGAAGAGAAAACAACCAAAACCATATATATACATATATATAATTACATTATATTGTCTTATAACATATAGTCTTTTAAGGAAAAACAAATTTAGAAAAAAAATAATATTATTTTACATTTTTTTTTCTTCATACAATATGGGTAGAGGGAAAGTAGAATTGAAGAGAATTGAGAACAAAATAAATAGACAAGTTACCTTTGCAAAGAGAAGAAATGGACTCCTAAAGAAAGCTTATGAACTTTCTATACTTTGTGATGCTGAAATTGCTCTTATTATTTTCTCTAGTCGTGGCAAGCTTTATGAATTTTGCAGCAATTCAAGTATGTCCAAGACATTGGAGAGATACCACAGATACAATTATGGTACACTTGAAGGAACCCAAACTTCATCAGATTCACAGAACAACTACCAAGAGTATTTGAAGCTTAAAACAAGAGTGGAAATGTTACAACAGTCTCAAAGGCATTTGCTAGGTGAGGATTTGGGACAATTGGGCACAAAAGACTTGGAACAGCTTGAACGTCAATTGGATTCATCATTGAGGCAAATTAGGTCAACAAAGACACAACACATTCTTGATCAACTTGCTGAACTTCAACAAAAGGAACAATCTCTTACTGAAATGAACAAATCTTTGAGAATAAAGTTGGAAGAACTTGGTGTTACCTTTCAAACATCATGGCATTGTGGTGAGCAAAGTGTACAATATAGACATGAACAGCCTTCTCATCATGAGGGATTTTTTCAACATGTAAATTGCAATAATACATTGCCTATAAGTTACGGATACGATAATGTACAACCCGAAAATGCAGCACCATCAACACATGATGCTACTGGAGTTGTACCTGGATGGATGCTTTGAATTTGGAGTATATGGAGAGAAAAAATCCTCTTAGTTATACAAGTTATTTATTTTTATTAAAAAAATAAGTTAGATGGAGAATTATATATATCATACTTTAAAGAACTTATATTGTTTGAATGTTTTAGCTAGCAAACACTTTGGATTATATATAATATTGTGATATATTTATTGTCAAGAAGAGTATGGCAATATTGATAACACTATATTTTTGAATTACTATTTACTATTTTCCTTTTTATGTGTGTTCAAGTTGAGGCCACATGAATCCATTGGAGAAAATAAAAAAAAACTTTGAAAAAATTGGAGGTTGATATATTCATCTATTTTTCACGTTTGAGTTTAATTTTTTTTCTTCTAAAATTCTATTGTTTTGTTTAATACATGCACATTCATATATCAAAGATATTTTCATCGAATCCGCGATTGTTCAAAACCTTTTAGAAGGTTTTTATCGTATCGAATTTAATTATGATATCATACTAAATTAGATATTCAGATTCACCCAAATGAAAAAAAAAATACGCAATATAAACAAAATTTTGAAGAAGTACGTTT
CDS Sequence
- >Solyc05g012020.4.1
TATATATACATATATATAATTACATTATATTGTCTTATAACATATAGTCTTTTAAGGAAAAACAAATTTAGAAAAAAAATAATATTATTTTACATTTTTTTTTCTTCATACAATATGGGTAGAGGGAAAGTAGAATTGAAGAGAATTGAGAACAAAATAAATAGACAAGTTACCTTTGCAAAGAGAAGAAATGGACTCCTAAAGAAAGCTTATGAACTTTCTATACTTTGTGATGCTGAAATTGCTCTTATTATTTTCTCTAGTCGTGGCAAGCTTTATGAATTTTGCAGCAATTCAAGTATGTCCAAGACATTGGAGAGATACCACAGATACAATTATGGTACACTTGAAGGAACCCAAACTTCATCAGATTCACAGAACAACTACCAAGAGTATTTGAAGCTTAAAACAAGAGTGGAAATGTTACAACAGTCTCAAAGGCATTTGCTAGGTGAGGATTTGGGACAATTGGGCACAAAAGACTTGGAACAGCTTGAACGTCAATTGGATTCATCATTGAGGCAAATTAGGTCAACAAAGACACAACACATTCTTGATCAACTTGCTGAACTTCAACAAAAGGAACAATCTCTTACTGAAATGAACAAATCTTTGAGAATAAAGTTGGAAGAACTTGGTGTTACCTTTCAAACATCATGGCATTGTGGTGAGCAAAGTGTACAATATAGACATGAACAGCCTTCTCATCATGAGGGATTTTTTCAACATGTAAATTGCAATAATACATTGCCTATAAGTTACGGATACGATAATGTACAACCCGAAAATGCAGCACCATCAACACATGATGCTACTGGAGTTGTACCTGGATGGATGCTTTGA
Protein Sequence
- >Solyc05g012020.4.1
YIYIYIITLYCLITYSLLRKNKFRKKIILFYIFFSSYNMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEIALIIFSSRGKLYEFCSNSSMSKTLERYHRYNYGTLEGTQTSSDSQNNYQEYLKLKTRVEMLQQSQRHLLGEDLGQLGTKDLEQLERQLDSSLRQIRSTKTQHILDQLAELQQKEQSLTEMNKSLRIKLEELGVTFQTSWHCGEQSVQYRHEQPSHHEGFFQHVNCNNTLPISYGYDNVQPENAAPSTHDATGVVPGWML*