Gene Details:
- Gene ID: Solyc07g045480
- Gene Symbol: PHYF
- Gene Name: SlPHYTOCHROME F
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- We report that SlPHYF acts as a red/far-red light reversible low fluence sensor, likely through the formation of heterodimers with SlphyB1 and SlphyB2.
- Our data further suggest that phyB2 requires the presence of either phyB1 or PHYF during seedling de-etiolation in red light, probably via heterodimerization, while phyB1 homodimers are required and sufficient to suppress hypocotyl elongation in red light.
- PHYF plays a redundant role with phyB1 in photoperiod detection and acts additively with phyA in root patterning.
- Our results demonstrate various roles for SlPHYF during seedling establishment, sometimes acting additively, other times acting redundantly with the other phytochromes in tomato.
Function-related keywords:
Literature:
- Phytochrome F mediates red light responsiveness additively with phytochromes B1 and B2 in tomato. DOI: 10.1093/plphys/kiad028 ; PMID: 36670526
Related News:
Gene Resources:
Orthologs:
Sequences:
cDNA Sequence
- >Solyc07g045480.3.1
ATTGTTGAGTGTATTTAAAGGTGTTTTGGTAAAGCCCCAACAAAAGTATATGCTTAAAGACTCTATTTTTAGCTGACTATTTTTCTTGATTTGGCTGAATGATTGACAATCAAGAAGCATAAGTTGAAGAATTAGAGCTTTTGATGCTTGTTCACATGGAGGAATCTTGGATTGGTACAAGGTAGTTCAAGTGGGTATCAACTTTTACCTTTTATTCTTGTTGAATTTGGTGGATTCTTGCTGTAACTTTTCTTTTCTTTATCACCTTATTTTGGTACTATTTTTATTCTAAATAAAAGGTGAGACCTTTTGTCTGGTCTTCAATTTTTTGTTGTTTCATTTCAGATTCTTGATTCTTCTAGGCTTTTACTAATAACATATGGGAGTTTTTTCCATCCCCAATTTTGGTTAAGAATCTATACAAAAGATAGCTAGAGAAACTGAAATTCTGAGGATAGAGAGAGATGTCTTCTAGTTCTACAACAAACAAGACGAATTGCTCAAGGGGCAGTTCAGCTAGATCTAGGCGTAGTGCTAGAGTTATTGCTCAGACTCCAGTTGATGCAAAGCTTCATGTGGAGTTTGAGGAGTCTGAGCAACAATTTGATTACTCTAGTTCAGTTAACTTGTCTAATTCCACTAGCAATGTTCCATCTTCAACTGTATCTGATTATCTCCAGAAAATGCAAAGGGGAAGTCTAATTCAGCCGTTTGGATGCATGATTGCTATTGATGCGCAAAACTTTGCTGTCATAGCCTATAGCGAAAATGCACCAGAAATGTTGGACTTGACACCTCATGCAGTTCCAAGCATCGAACAGCAAGAGGCTCTGACATTTGGAACAGATGTCAGGAAACTTTTTCGATCTTCAGGTGCTTCTGCCCTTGAAAAAGCAGTCAGCTTTGGAGAACTTAGTTTGCTAAATCCTATTTTGGTTCATTGTAAAAACTCAGGCAAGCCTTTCTATGCGATTCTGCACCGCATTGAGGTTGGATTAGTAATAGATTTGGAGCCTGTGGATCCACACGAGGTCCCTGTAACTACAGCAGGAGCTATAAAATCTTATAAGCTAGCAGCTAAAGCCATTCGGAAATTGCAATCTCTACCAAGCGGGGATATATCATTGTTATGTGATGTGTTAGTTAGAGAAGTGAGTCATTTGACTGGCTATGATCGTGTTATGGTTTATAAATTCCACGAGGATGAACACGGGGAAGTAGTTGCTGAATGTCGTACGCCTGAACTAGAACCTTATCTTGGCTTGCATTACCCTGCTACAGATATACCACAAGCTTCAAGATTTCTCTTCATGAAGAATAAGGTTAGGATGATATGTGATTGCTTAGCTCCACCAATTAGGGTGATTCAAGATCCAAGATTGGCTCAGTCGCTGAGCCTTGGTGGATCCACATTAAGAGCTCCACATGGCTGTCATGCACAATACATGACCAATATGGGTACTGTTGCATCTATGGCGATGTCTGTGATGATTAATGAGCAAGATGATGAGCTGGATAGTGACCAGCAAGTGGGAAGAAAACTGTGGGGTTTGGTAGTTTGCCATCACACTTGCCCTAGATTTCTTTCTTTTCCTTTGAGGTACGCGTCTGAGTTCTTGCTTCAAGTTTTCAGTGTTCAGGTCAATAAAGAAGTGGAAATGGCAGCTCAACTTAAGGAAAAGCAGATACTGCAAATTCAAACTGTTCTATGTGACATGCTTCTAAGAGATGCTCCCATGGGGATTGTTACTCAGTCTCCTAATGTTATGGACCTTGTAAAGTGTGACGGGGCTGCACTTTATTATAGGAACAAGCTTTGGTTGCATGGTGTTACCCCTGCGGAGTCCCAAATCAGAGATATAGCTGAATGGCTCAATGAATCTCATGGTGATAGTACAGGTCTGAACACTGATAGCCTCATGGAAGCTGGCTTCCCAGGTGCTTCTGTGCTCGGTGATGCGGTATGTGGAATGGCTGCTGTAAAAATAACTTCAAAAGATTTCCTCTTCTGGTTCCGTTCCCACACGGCTAAAGAAATCAAGTGGGGTGGTGCAAAACATCTTCCTGGAGACAAGGATGACGGAAGAAAAATGCACCCAAGGTCATCATTTAAAGCCTTTCTGGAGGTTGTTAAGCGGCGGAGCCTGCCTTGGGAAGATGTGGAAATGGATGCCATCCATTCCCTGCAGCTGATATTGCGAGGATCTTTGCAAGATGAGGCTGCTGATTGTTCTAAAATGATTGTGAATGTCCCTGCTGTAGATACCATTATAGATAGAGTGGATACACTTCATATTAACGATATGGTTCGTCTCGTTGAAACAGCATCAATGCCTGTTTTGGCTGTTGATACTTCAGGCCGTATCAATGGATGGAACTCTAAAGTTTCTGAACTAACTGGATTGCCGGTAGAGAATGTTATAGGTGTACCTTTGGTTGATTTGGTTATTGGTGGTACAACAAACACAATTAAACGTGTTCTCTCCCTAGCTTTGCAAGGCAAGGAGGAGAAAAATGTGGAAATCAAACTTAGAACACTTGGTCCTCAAGAAAAGGTCGGGTCAATTTCAATAGTGGTTAATGCCTGCTGTAGTCGAGATTTCAAACAAAACATAGTTGGAGTTTGCTTTACTGGAAAAGATGTTACTGGGCTAAAGCTGATTAAGGACAAATATAGTCGCGTTCAAGGTGATTATGTTGGAATTATCCATAGTCCATCTCCTTTAATTCCTCCAATTTTTGTGATGGATGAGCAGGGAAGATGTGTGGAATGGAATGATGCTATGCACAAGTTGACTGGGTCGAAGAGGGAGGAGGTCATTGATCAAATGCTTCTTGGTGAAGTTTTCACAGTCAATAGCTTCGGTTGCAGGGTTAAAGATCAAGACACATTAACCCAGCTCACGATATTATTGAATAGAGTAATTGCTGGTGGGGAAGGTGAGAAATTGTTTTTTGGGTTATTTAATAAACAGGATAAGTATATTGAAGCCTTAATCTCTGCAAATAAAAAAGTTGATGACGATGGTCGAGTAACTGGGGTCTTGTGCTTCCTGCATGTTCCTAGTCCAGAACTTCAATATGCAATGCACGTACAAAAGCTGTCAGAACAAGCTGCTAAAAATAGTCTTAAAAAGTTGGCTTATGTTCGTCTTGAACTAAAAAACCCTTTAAATGGGATAAACTGCATACAGAATCTGCTGAAATCTTCTGATTTGAGCAAGGATCAAAGGCAATTGCTGAAGACAAGCACAATGTGTCAAAAACAACTAGCCAAGATCATTGACGACACTGATATTGAGAGTATTGAGGAATGCTATACAGAAATGAACTCTTGTGAGTTCAATCTTGGAGAAGTTGTTACAGTGGTCATTAACCAAGTTATGATTCTTAGTCAGGAGCGTAAGGTTCAGGTCACATGGGACTCGCCTGTCGAAGTATCACAGTTGTACCTGATTGGTGACAATTTGAGGCTTCAACAAGTCCTTTCTGACTTTTTGACCACAGCTATCCTCTTTACTCCCTTTGAAGACTCCTCTGTGCATTTCAGAGTAATTCCAAGGAAGGAACGTATAGGGACGAAGATGTACATCATGCATCTTGAATTTCGGATCACTCATCCATCCCCAGGGATACCTGACGATTTAATTCAACATATGTTCCACTACAGTCGGAGCATATCAAGGGAAGGTTTTGGCCTATACATCAGCCAGAAACTTGTTAAAATCATGGATGGTACCGTCCAGTATCTTCGCGAGGCTGACAGATCCTCATTCATTATATTAGTTGAATTTCCACTGATGGAGAAGAAGAACAACTAATAATTCCAGACAAAAGTGTTCCTGACTATCCTGCTGCAGACAACACGTTTTTACATAAATTTTTTTTTAGACAGGTGGAGTTCTCTAGTACTTCACTTACCATTTCTAATGGCTCTTCATAGTTTACCTAGGCTTATGCAAATGGAGTTCGCTAGAACTTAGCGAAGAATCTCCACTGCTGATATCCTTGCTCCACCATAGGCATGCATAGTCAAGATTCTGGAAAAGGTTACTTTCAGAGAATCAGCTTCTCGACCAGCCAACTGGCGTTGTTATTTGAATAGATTGTATGTTTACCCATTGGAGTGGTGGCTTTTAGACTGTATGCAATCTAATGTATATGCTGCAACATCAGTGCCAATAGTTGCTTTTCGAGGCCAGAGGGTCGTTGCTTCCTCTTCTTCTTCTTCTACCTAACAGCATGGGACGCGGGCATCTTGACAGCCATTTCAGCAAAGGGTGTGAAGAATTCAGCATAACTTAGTTATCAACTGACATAATGTACAGCAACTATTAAGAAGAACAACCTTTCAACATATCATTTCATATCACTCTACTACTTCAAAGTAAAATCCACATAATCTTATCCTCTTA
CDS Sequence
- >Solyc07g045480.3.1
ATGTCTTCTAGTTCTACAACAAACAAGACGAATTGCTCAAGGGGCAGTTCAGCTAGATCTAGGCGTAGTGCTAGAGTTATTGCTCAGACTCCAGTTGATGCAAAGCTTCATGTGGAGTTTGAGGAGTCTGAGCAACAATTTGATTACTCTAGTTCAGTTAACTTGTCTAATTCCACTAGCAATGTTCCATCTTCAACTGTATCTGATTATCTCCAGAAAATGCAAAGGGGAAGTCTAATTCAGCCGTTTGGATGCATGATTGCTATTGATGCGCAAAACTTTGCTGTCATAGCCTATAGCGAAAATGCACCAGAAATGTTGGACTTGACACCTCATGCAGTTCCAAGCATCGAACAGCAAGAGGCTCTGACATTTGGAACAGATGTCAGGAAACTTTTTCGATCTTCAGGTGCTTCTGCCCTTGAAAAAGCAGTCAGCTTTGGAGAACTTAGTTTGCTAAATCCTATTTTGGTTCATTGTAAAAACTCAGGCAAGCCTTTCTATGCGATTCTGCACCGCATTGAGGTTGGATTAGTAATAGATTTGGAGCCTGTGGATCCACACGAGGTCCCTGTAACTACAGCAGGAGCTATAAAATCTTATAAGCTAGCAGCTAAAGCCATTCGGAAATTGCAATCTCTACCAAGCGGGGATATATCATTGTTATGTGATGTGTTAGTTAGAGAAGTGAGTCATTTGACTGGCTATGATCGTGTTATGGTTTATAAATTCCACGAGGATGAACACGGGGAAGTAGTTGCTGAATGTCGTACGCCTGAACTAGAACCTTATCTTGGCTTGCATTACCCTGCTACAGATATACCACAAGCTTCAAGATTTCTCTTCATGAAGAATAAGGTTAGGATGATATGTGATTGCTTAGCTCCACCAATTAGGGTGATTCAAGATCCAAGATTGGCTCAGTCGCTGAGCCTTGGTGGATCCACATTAAGAGCTCCACATGGCTGTCATGCACAATACATGACCAATATGGGTACTGTTGCATCTATGGCGATGTCTGTGATGATTAATGAGCAAGATGATGAGCTGGATAGTGACCAGCAAGTGGGAAGAAAACTGTGGGGTTTGGTAGTTTGCCATCACACTTGCCCTAGATTTCTTTCTTTTCCTTTGAGGTACGCGTCTGAGTTCTTGCTTCAAGTTTTCAGTGTTCAGGTCAATAAAGAAGTGGAAATGGCAGCTCAACTTAAGGAAAAGCAGATACTGCAAATTCAAACTGTTCTATGTGACATGCTTCTAAGAGATGCTCCCATGGGGATTGTTACTCAGTCTCCTAATGTTATGGACCTTGTAAAGTGTGACGGGGCTGCACTTTATTATAGGAACAAGCTTTGGTTGCATGGTGTTACCCCTGCGGAGTCCCAAATCAGAGATATAGCTGAATGGCTCAATGAATCTCATGGTGATAGTACAGGTCTGAACACTGATAGCCTCATGGAAGCTGGCTTCCCAGGTGCTTCTGTGCTCGGTGATGCGGTATGTGGAATGGCTGCTGTAAAAATAACTTCAAAAGATTTCCTCTTCTGGTTCCGTTCCCACACGGCTAAAGAAATCAAGTGGGGTGGTGCAAAACATCTTCCTGGAGACAAGGATGACGGAAGAAAAATGCACCCAAGGTCATCATTTAAAGCCTTTCTGGAGGTTGTTAAGCGGCGGAGCCTGCCTTGGGAAGATGTGGAAATGGATGCCATCCATTCCCTGCAGCTGATATTGCGAGGATCTTTGCAAGATGAGGCTGCTGATTGTTCTAAAATGATTGTGAATGTCCCTGCTGTAGATACCATTATAGATAGAGTGGATACACTTCATATTAACGATATGGTTCGTCTCGTTGAAACAGCATCAATGCCTGTTTTGGCTGTTGATACTTCAGGCCGTATCAATGGATGGAACTCTAAAGTTTCTGAACTAACTGGATTGCCGGTAGAGAATGTTATAGGTGTACCTTTGGTTGATTTGGTTATTGGTGGTACAACAAACACAATTAAACGTGTTCTCTCCCTAGCTTTGCAAGGCAAGGAGGAGAAAAATGTGGAAATCAAACTTAGAACACTTGGTCCTCAAGAAAAGGTCGGGTCAATTTCAATAGTGGTTAATGCCTGCTGTAGTCGAGATTTCAAACAAAACATAGTTGGAGTTTGCTTTACTGGAAAAGATGTTACTGGGCTAAAGCTGATTAAGGACAAATATAGTCGCGTTCAAGGTGATTATGTTGGAATTATCCATAGTCCATCTCCTTTAATTCCTCCAATTTTTGTGATGGATGAGCAGGGAAGATGTGTGGAATGGAATGATGCTATGCACAAGTTGACTGGGTCGAAGAGGGAGGAGGTCATTGATCAAATGCTTCTTGGTGAAGTTTTCACAGTCAATAGCTTCGGTTGCAGGGTTAAAGATCAAGACACATTAACCCAGCTCACGATATTATTGAATAGAGTAATTGCTGGTGGGGAAGGTGAGAAATTGTTTTTTGGGTTATTTAATAAACAGGATAAGTATATTGAAGCCTTAATCTCTGCAAATAAAAAAGTTGATGACGATGGTCGAGTAACTGGGGTCTTGTGCTTCCTGCATGTTCCTAGTCCAGAACTTCAATATGCAATGCACGTACAAAAGCTGTCAGAACAAGCTGCTAAAAATAGTCTTAAAAAGTTGGCTTATGTTCGTCTTGAACTAAAAAACCCTTTAAATGGGATAAACTGCATACAGAATCTGCTGAAATCTTCTGATTTGAGCAAGGATCAAAGGCAATTGCTGAAGACAAGCACAATGTGTCAAAAACAACTAGCCAAGATCATTGACGACACTGATATTGAGAGTATTGAGGAATGCTATACAGAAATGAACTCTTGTGAGTTCAATCTTGGAGAAGTTGTTACAGTGGTCATTAACCAAGTTATGATTCTTAGTCAGGAGCGTAAGGTTCAGGTCACATGGGACTCGCCTGTCGAAGTATCACAGTTGTACCTGATTGGTGACAATTTGAGGCTTCAACAAGTCCTTTCTGACTTTTTGACCACAGCTATCCTCTTTACTCCCTTTGAAGACTCCTCTGTGCATTTCAGAGTAATTCCAAGGAAGGAACGTATAGGGACGAAGATGTACATCATGCATCTTGAATTTCGGATCACTCATCCATCCCCAGGGATACCTGACGATTTAATTCAACATATGTTCCACTACAGTCGGAGCATATCAAGGGAAGGTTTTGGCCTATACATCAGCCAGAAACTTGTTAAAATCATGGATGGTACCGTCCAGTATCTTCGCGAGGCTGACAGATCCTCATTCATTATATTAGTTGAATTTCCACTGATGGAGAAGAAGAACAACTAA
Protein Sequence
- >Solyc07g045480.3.1
MSSSSTTNKTNCSRGSSARSRRSARVIAQTPVDAKLHVEFEESEQQFDYSSSVNLSNSTSNVPSSTVSDYLQKMQRGSLIQPFGCMIAIDAQNFAVIAYSENAPEMLDLTPHAVPSIEQQEALTFGTDVRKLFRSSGASALEKAVSFGELSLLNPILVHCKNSGKPFYAILHRIEVGLVIDLEPVDPHEVPVTTAGAIKSYKLAAKAIRKLQSLPSGDISLLCDVLVREVSHLTGYDRVMVYKFHEDEHGEVVAECRTPELEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPPIRVIQDPRLAQSLSLGGSTLRAPHGCHAQYMTNMGTVASMAMSVMINEQDDELDSDQQVGRKLWGLVVCHHTCPRFLSFPLRYASEFLLQVFSVQVNKEVEMAAQLKEKQILQIQTVLCDMLLRDAPMGIVTQSPNVMDLVKCDGAALYYRNKLWLHGVTPAESQIRDIAEWLNESHGDSTGLNTDSLMEAGFPGASVLGDAVCGMAAVKITSKDFLFWFRSHTAKEIKWGGAKHLPGDKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSLQDEAADCSKMIVNVPAVDTIIDRVDTLHINDMVRLVETASMPVLAVDTSGRINGWNSKVSELTGLPVENVIGVPLVDLVIGGTTNTIKRVLSLALQGKEEKNVEIKLRTLGPQEKVGSISIVVNACCSRDFKQNIVGVCFTGKDVTGLKLIKDKYSRVQGDYVGIIHSPSPLIPPIFVMDEQGRCVEWNDAMHKLTGSKREEVIDQMLLGEVFTVNSFGCRVKDQDTLTQLTILLNRVIAGGEGEKLFFGLFNKQDKYIEALISANKKVDDDGRVTGVLCFLHVPSPELQYAMHVQKLSEQAAKNSLKKLAYVRLELKNPLNGINCIQNLLKSSDLSKDQRQLLKTSTMCQKQLAKIIDDTDIESIEECYTEMNSCEFNLGEVVTVVINQVMILSQERKVQVTWDSPVEVSQLYLIGDNLRLQQVLSDFLTTAILFTPFEDSSVHFRVIPRKERIGTKMYIMHLEFRITHPSPGIPDDLIQHMFHYSRSISREGFGLYISQKLVKIMDGTVQYLREADRSSFIILVEFPLMEKKNN*