Information report for PHYF
Gene Details
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Functional Descriptions
- We report that SlPHYF acts as a red/far-red light reversible low fluence sensor, likely through the formation of heterodimers with SlphyB1 and SlphyB2.
- Our data further suggest that phyB2 requires the presence of either phyB1 or PHYF during seedling de-etiolation in red light, probably via heterodimerization, while phyB1 homodimers are required and sufficient to suppress hypocotyl elongation in red light.
- PHYF plays a redundant role with phyB1 in photoperiod detection and acts additively with phyA in root patterning.
- Our results demonstrate various roles for SlPHYF during seedling establishment, sometimes acting additively, other times acting redundantly with the other phytochromes in tomato.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 101259349
- UniProt accessions: Q41335
- EMBL: U32444
- EnsemblPlants: Solyc07g045480.3.1
- Gramene: Solyc07g045480.3.1
- KEGG: sly:101259349
- GO: GO:0000155 , GO:0005634 , GO:0006355 , GO:0009584 , GO:0009585 , GO:0009881 , GO:0042803
- OMA: QEYHDGS
- InterPro: IPR000014 , IPR001294 , IPR003018 , IPR003594 , IPR003661 , IPR005467 , IPR012129 , IPR013515 , IPR013516 , IPR013654 , IPR013767 , IPR016132 , IPR029016 , IPR035965 , IPR036890 , IPR043150 , IPR044767
- PANTHER: PTHR47876 , PTHR47876:SF3
- SUPFAM: SSF55781 , SSF55785 , SSF55874
- PROSITE: PS00245 , PS50046 , PS50109 , PS50112
- Gene3D: 1.10.287.130 , 3.30.450.20 , 3.30.450.270 , 3.30.450.40 , 3.30.565.10
- OrthoDB: Q41335
- Pfam: PF00360 , PF00512 , PF00989 , PF01590 , PF02518 , PF08446
- SMR: Q41335
- CDD: cd00082 , cd00130 , cd16932
- STRING: 4081.Q41335
- HOGENOM: CLU_010418_0_0_1
Sequences
cDNA Sequence
- >Solyc07g045480.3.1
ATTGTTGAGTGTATTTAAAGGTGTTTTGGTAAAGCCCCAACAAAAGTATATGCTTAAAGACTCTATTTTTAGCTGACTATTTTTCTTGATTTGGCTGAATGATTGACAATCAAGAAGCATAAGTTGAAGAATTAGAGCTTTTGATGCTTGTTCACATGGAGGAATCTTGGATTGGTACAAGGTAGTTCAAGTGGGTATCAACTTTTACCTTTTATTCTTGTTGAATTTGGTGGATTCTTGCTGTAACTTTTCTTTTCTTTATCACCTTATTTTGGTACTATTTTTATTCTAAATAAAAGGTGAGACCTTTTGTCTGGTCTTCAATTTTTTGTTGTTTCATTTCAGATTCTTGATTCTTCTAGGCTTTTACTAATAACATATGGGAGTTTTTTCCATCCCCAATTTTGGTTAAGAATCTATACAAAAGATAGCTAGAGAAACTGAAATTCTGAGGATAGAGAGAGATGTCTTCTAGTTCTACAACAAACAAGACGAATTGCTCAAGGGGCAGTTCAGCTAGATCTAGGCGTAGTGCTAGAGTTATTGCTCAGACTCCAGTTGATGCAAAGCTTCATGTGGAGTTTGAGGAGTCTGAGCAACAATTTGATTACTCTAGTTCAGTTAACTTGTCTAATTCCACTAGCAATGTTCCATCTTCAACTGTATCTGATTATCTCCAGAAAATGCAAAGGGGAAGTCTAATTCAGCCGTTTGGATGCATGATTGCTATTGATGCGCAAAACTTTGCTGTCATAGCCTATAGCGAAAATGCACCAGAAATGTTGGACTTGACACCTCATGCAGTTCCAAGCATCGAACAGCAAGAGGCTCTGACATTTGGAACAGATGTCAGGAAACTTTTTCGATCTTCAGGTGCTTCTGCCCTTGAAAAAGCAGTCAGCTTTGGAGAACTTAGTTTGCTAAATCCTATTTTGGTTCATTGTAAAAACTCAGGCAAGCCTTTCTATGCGATTCTGCACCGCATTGAGGTTGGATTAGTAATAGATTTGGAGCCTGTGGATCCACACGAGGTCCCTGTAACTACAGCAGGAGCTATAAAATCTTATAAGCTAGCAGCTAAAGCCATTCGGAAATTGCAATCTCTACCAAGCGGGGATATATCATTGTTATGTGATGTGTTAGTTAGAGAAGTGAGTCATTTGACTGGCTATGATCGTGTTATGGTTTATAAATTCCACGAGGATGAACACGGGGAAGTAGTTGCTGAATGTCGTACGCCTGAACTAGAACCTTATCTTGGCTTGCATTACCCTGCTACAGATATACCACAAGCTTCAAGATTTCTCTTCATGAAGAATAAGGTTAGGATGATATGTGATTGCTTAGCTCCACCAATTAGGGTGATTCAAGATCCAAGATTGGCTCAGTCGCTGAGCCTTGGTGGATCCACATTAAGAGCTCCACATGGCTGTCATGCACAATACATGACCAATATGGGTACTGTTGCATCTATGGCGATGTCTGTGATGATTAATGAGCAAGATGATGAGCTGGATAGTGACCAGCAAGTGGGAAGAAAACTGTGGGGTTTGGTAGTTTGCCATCACACTTGCCCTAGATTTCTTTCTTTTCCTTTGAGGTACGCGTCTGAGTTCTTGCTTCAAGTTTTCAGTGTTCAGGTCAATAAAGAAGTGGAAATGGCAGCTCAACTTAAGGAAAAGCAGATACTGCAAATTCAAACTGTTCTATGTGACATGCTTCTAAGAGATGCTCCCATGGGGATTGTTACTCAGTCTCCTAATGTTATGGACCTTGTAAAGTGTGACGGGGCTGCACTTTATTATAGGAACAAGCTTTGGTTGCATGGTGTTACCCCTGCGGAGTCCCAAATCAGAGATATAGCTGAATGGCTCAATGAATCTCATGGTGATAGTACAGGTCTGAACACTGATAGCCTCATGGAAGCTGGCTTCCCAGGTGCTTCTGTGCTCGGTGATGCGGTATGTGGAATGGCTGCTGTAAAAATAACTTCAAAAGATTTCCTCTTCTGGTTCCGTTCCCACACGGCTAAAGAAATCAAGTGGGGTGGTGCAAAACATCTTCCTGGAGACAAGGATGACGGAAGAAAAATGCACCCAAGGTCATCATTTAAAGCCTTTCTGGAGGTTGTTAAGCGGCGGAGCCTGCCTTGGGAAGATGTGGAAATGGATGCCATCCATTCCCTGCAGCTGATATTGCGAGGATCTTTGCAAGATGAGGCTGCTGATTGTTCTAAAATGATTGTGAATGTCCCTGCTGTAGATACCATTATAGATAGAGTGGATACACTTCATATTAACGATATGGTTCGTCTCGTTGAAACAGCATCAATGCCTGTTTTGGCTGTTGATACTTCAGGCCGTATCAATGGATGGAACTCTAAAGTTTCTGAACTAACTGGATTGCCGGTAGAGAATGTTATAGGTGTACCTTTGGTTGATTTGGTTATTGGTGGTACAACAAACACAATTAAACGTGTTCTCTCCCTAGCTTTGCAAGGCAAGGAGGAGAAAAATGTGGAAATCAAACTTAGAACACTTGGTCCTCAAGAAAAGGTCGGGTCAATTTCAATAGTGGTTAATGCCTGCTGTAGTCGAGATTTCAAACAAAACATAGTTGGAGTTTGCTTTACTGGAAAAGATGTTACTGGGCTAAAGCTGATTAAGGACAAATATAGTCGCGTTCAAGGTGATTATGTTGGAATTATCCATAGTCCATCTCCTTTAATTCCTCCAATTTTTGTGATGGATGAGCAGGGAAGATGTGTGGAATGGAATGATGCTATGCACAAGTTGACTGGGTCGAAGAGGGAGGAGGTCATTGATCAAATGCTTCTTGGTGAAGTTTTCACAGTCAATAGCTTCGGTTGCAGGGTTAAAGATCAAGACACATTAACCCAGCTCACGATATTATTGAATAGAGTAATTGCTGGTGGGGAAGGTGAGAAATTGTTTTTTGGGTTATTTAATAAACAGGATAAGTATATTGAAGCCTTAATCTCTGCAAATAAAAAAGTTGATGACGATGGTCGAGTAACTGGGGTCTTGTGCTTCCTGCATGTTCCTAGTCCAGAACTTCAATATGCAATGCACGTACAAAAGCTGTCAGAACAAGCTGCTAAAAATAGTCTTAAAAAGTTGGCTTATGTTCGTCTTGAACTAAAAAACCCTTTAAATGGGATAAACTGCATACAGAATCTGCTGAAATCTTCTGATTTGAGCAAGGATCAAAGGCAATTGCTGAAGACAAGCACAATGTGTCAAAAACAACTAGCCAAGATCATTGACGACACTGATATTGAGAGTATTGAGGAATGCTATACAGAAATGAACTCTTGTGAGTTCAATCTTGGAGAAGTTGTTACAGTGGTCATTAACCAAGTTATGATTCTTAGTCAGGAGCGTAAGGTTCAGGTCACATGGGACTCGCCTGTCGAAGTATCACAGTTGTACCTGATTGGTGACAATTTGAGGCTTCAACAAGTCCTTTCTGACTTTTTGACCACAGCTATCCTCTTTACTCCCTTTGAAGACTCCTCTGTGCATTTCAGAGTAATTCCAAGGAAGGAACGTATAGGGACGAAGATGTACATCATGCATCTTGAATTTCGGATCACTCATCCATCCCCAGGGATACCTGACGATTTAATTCAACATATGTTCCACTACAGTCGGAGCATATCAAGGGAAGGTTTTGGCCTATACATCAGCCAGAAACTTGTTAAAATCATGGATGGTACCGTCCAGTATCTTCGCGAGGCTGACAGATCCTCATTCATTATATTAGTTGAATTTCCACTGATGGAGAAGAAGAACAACTAATAATTCCAGACAAAAGTGTTCCTGACTATCCTGCTGCAGACAACACGTTTTTACATAAATTTTTTTTTAGACAGGTGGAGTTCTCTAGTACTTCACTTACCATTTCTAATGGCTCTTCATAGTTTACCTAGGCTTATGCAAATGGAGTTCGCTAGAACTTAGCGAAGAATCTCCACTGCTGATATCCTTGCTCCACCATAGGCATGCATAGTCAAGATTCTGGAAAAGGTTACTTTCAGAGAATCAGCTTCTCGACCAGCCAACTGGCGTTGTTATTTGAATAGATTGTATGTTTACCCATTGGAGTGGTGGCTTTTAGACTGTATGCAATCTAATGTATATGCTGCAACATCAGTGCCAATAGTTGCTTTTCGAGGCCAGAGGGTCGTTGCTTCCTCTTCTTCTTCTTCTACCTAACAGCATGGGACGCGGGCATCTTGACAGCCATTTCAGCAAAGGGTGTGAAGAATTCAGCATAACTTAGTTATCAACTGACATAATGTACAGCAACTATTAAGAAGAACAACCTTTCAACATATCATTTCATATCACTCTACTACTTCAAAGTAAAATCCACATAATCTTATCCTCTTA
CDS Sequence
- >Solyc07g045480.3.1
ATGTCTTCTAGTTCTACAACAAACAAGACGAATTGCTCAAGGGGCAGTTCAGCTAGATCTAGGCGTAGTGCTAGAGTTATTGCTCAGACTCCAGTTGATGCAAAGCTTCATGTGGAGTTTGAGGAGTCTGAGCAACAATTTGATTACTCTAGTTCAGTTAACTTGTCTAATTCCACTAGCAATGTTCCATCTTCAACTGTATCTGATTATCTCCAGAAAATGCAAAGGGGAAGTCTAATTCAGCCGTTTGGATGCATGATTGCTATTGATGCGCAAAACTTTGCTGTCATAGCCTATAGCGAAAATGCACCAGAAATGTTGGACTTGACACCTCATGCAGTTCCAAGCATCGAACAGCAAGAGGCTCTGACATTTGGAACAGATGTCAGGAAACTTTTTCGATCTTCAGGTGCTTCTGCCCTTGAAAAAGCAGTCAGCTTTGGAGAACTTAGTTTGCTAAATCCTATTTTGGTTCATTGTAAAAACTCAGGCAAGCCTTTCTATGCGATTCTGCACCGCATTGAGGTTGGATTAGTAATAGATTTGGAGCCTGTGGATCCACACGAGGTCCCTGTAACTACAGCAGGAGCTATAAAATCTTATAAGCTAGCAGCTAAAGCCATTCGGAAATTGCAATCTCTACCAAGCGGGGATATATCATTGTTATGTGATGTGTTAGTTAGAGAAGTGAGTCATTTGACTGGCTATGATCGTGTTATGGTTTATAAATTCCACGAGGATGAACACGGGGAAGTAGTTGCTGAATGTCGTACGCCTGAACTAGAACCTTATCTTGGCTTGCATTACCCTGCTACAGATATACCACAAGCTTCAAGATTTCTCTTCATGAAGAATAAGGTTAGGATGATATGTGATTGCTTAGCTCCACCAATTAGGGTGATTCAAGATCCAAGATTGGCTCAGTCGCTGAGCCTTGGTGGATCCACATTAAGAGCTCCACATGGCTGTCATGCACAATACATGACCAATATGGGTACTGTTGCATCTATGGCGATGTCTGTGATGATTAATGAGCAAGATGATGAGCTGGATAGTGACCAGCAAGTGGGAAGAAAACTGTGGGGTTTGGTAGTTTGCCATCACACTTGCCCTAGATTTCTTTCTTTTCCTTTGAGGTACGCGTCTGAGTTCTTGCTTCAAGTTTTCAGTGTTCAGGTCAATAAAGAAGTGGAAATGGCAGCTCAACTTAAGGAAAAGCAGATACTGCAAATTCAAACTGTTCTATGTGACATGCTTCTAAGAGATGCTCCCATGGGGATTGTTACTCAGTCTCCTAATGTTATGGACCTTGTAAAGTGTGACGGGGCTGCACTTTATTATAGGAACAAGCTTTGGTTGCATGGTGTTACCCCTGCGGAGTCCCAAATCAGAGATATAGCTGAATGGCTCAATGAATCTCATGGTGATAGTACAGGTCTGAACACTGATAGCCTCATGGAAGCTGGCTTCCCAGGTGCTTCTGTGCTCGGTGATGCGGTATGTGGAATGGCTGCTGTAAAAATAACTTCAAAAGATTTCCTCTTCTGGTTCCGTTCCCACACGGCTAAAGAAATCAAGTGGGGTGGTGCAAAACATCTTCCTGGAGACAAGGATGACGGAAGAAAAATGCACCCAAGGTCATCATTTAAAGCCTTTCTGGAGGTTGTTAAGCGGCGGAGCCTGCCTTGGGAAGATGTGGAAATGGATGCCATCCATTCCCTGCAGCTGATATTGCGAGGATCTTTGCAAGATGAGGCTGCTGATTGTTCTAAAATGATTGTGAATGTCCCTGCTGTAGATACCATTATAGATAGAGTGGATACACTTCATATTAACGATATGGTTCGTCTCGTTGAAACAGCATCAATGCCTGTTTTGGCTGTTGATACTTCAGGCCGTATCAATGGATGGAACTCTAAAGTTTCTGAACTAACTGGATTGCCGGTAGAGAATGTTATAGGTGTACCTTTGGTTGATTTGGTTATTGGTGGTACAACAAACACAATTAAACGTGTTCTCTCCCTAGCTTTGCAAGGCAAGGAGGAGAAAAATGTGGAAATCAAACTTAGAACACTTGGTCCTCAAGAAAAGGTCGGGTCAATTTCAATAGTGGTTAATGCCTGCTGTAGTCGAGATTTCAAACAAAACATAGTTGGAGTTTGCTTTACTGGAAAAGATGTTACTGGGCTAAAGCTGATTAAGGACAAATATAGTCGCGTTCAAGGTGATTATGTTGGAATTATCCATAGTCCATCTCCTTTAATTCCTCCAATTTTTGTGATGGATGAGCAGGGAAGATGTGTGGAATGGAATGATGCTATGCACAAGTTGACTGGGTCGAAGAGGGAGGAGGTCATTGATCAAATGCTTCTTGGTGAAGTTTTCACAGTCAATAGCTTCGGTTGCAGGGTTAAAGATCAAGACACATTAACCCAGCTCACGATATTATTGAATAGAGTAATTGCTGGTGGGGAAGGTGAGAAATTGTTTTTTGGGTTATTTAATAAACAGGATAAGTATATTGAAGCCTTAATCTCTGCAAATAAAAAAGTTGATGACGATGGTCGAGTAACTGGGGTCTTGTGCTTCCTGCATGTTCCTAGTCCAGAACTTCAATATGCAATGCACGTACAAAAGCTGTCAGAACAAGCTGCTAAAAATAGTCTTAAAAAGTTGGCTTATGTTCGTCTTGAACTAAAAAACCCTTTAAATGGGATAAACTGCATACAGAATCTGCTGAAATCTTCTGATTTGAGCAAGGATCAAAGGCAATTGCTGAAGACAAGCACAATGTGTCAAAAACAACTAGCCAAGATCATTGACGACACTGATATTGAGAGTATTGAGGAATGCTATACAGAAATGAACTCTTGTGAGTTCAATCTTGGAGAAGTTGTTACAGTGGTCATTAACCAAGTTATGATTCTTAGTCAGGAGCGTAAGGTTCAGGTCACATGGGACTCGCCTGTCGAAGTATCACAGTTGTACCTGATTGGTGACAATTTGAGGCTTCAACAAGTCCTTTCTGACTTTTTGACCACAGCTATCCTCTTTACTCCCTTTGAAGACTCCTCTGTGCATTTCAGAGTAATTCCAAGGAAGGAACGTATAGGGACGAAGATGTACATCATGCATCTTGAATTTCGGATCACTCATCCATCCCCAGGGATACCTGACGATTTAATTCAACATATGTTCCACTACAGTCGGAGCATATCAAGGGAAGGTTTTGGCCTATACATCAGCCAGAAACTTGTTAAAATCATGGATGGTACCGTCCAGTATCTTCGCGAGGCTGACAGATCCTCATTCATTATATTAGTTGAATTTCCACTGATGGAGAAGAAGAACAACTAA
Protein Sequence
- >Solyc07g045480.3.1
MSSSSTTNKTNCSRGSSARSRRSARVIAQTPVDAKLHVEFEESEQQFDYSSSVNLSNSTSNVPSSTVSDYLQKMQRGSLIQPFGCMIAIDAQNFAVIAYSENAPEMLDLTPHAVPSIEQQEALTFGTDVRKLFRSSGASALEKAVSFGELSLLNPILVHCKNSGKPFYAILHRIEVGLVIDLEPVDPHEVPVTTAGAIKSYKLAAKAIRKLQSLPSGDISLLCDVLVREVSHLTGYDRVMVYKFHEDEHGEVVAECRTPELEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPPIRVIQDPRLAQSLSLGGSTLRAPHGCHAQYMTNMGTVASMAMSVMINEQDDELDSDQQVGRKLWGLVVCHHTCPRFLSFPLRYASEFLLQVFSVQVNKEVEMAAQLKEKQILQIQTVLCDMLLRDAPMGIVTQSPNVMDLVKCDGAALYYRNKLWLHGVTPAESQIRDIAEWLNESHGDSTGLNTDSLMEAGFPGASVLGDAVCGMAAVKITSKDFLFWFRSHTAKEIKWGGAKHLPGDKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSLQDEAADCSKMIVNVPAVDTIIDRVDTLHINDMVRLVETASMPVLAVDTSGRINGWNSKVSELTGLPVENVIGVPLVDLVIGGTTNTIKRVLSLALQGKEEKNVEIKLRTLGPQEKVGSISIVVNACCSRDFKQNIVGVCFTGKDVTGLKLIKDKYSRVQGDYVGIIHSPSPLIPPIFVMDEQGRCVEWNDAMHKLTGSKREEVIDQMLLGEVFTVNSFGCRVKDQDTLTQLTILLNRVIAGGEGEKLFFGLFNKQDKYIEALISANKKVDDDGRVTGVLCFLHVPSPELQYAMHVQKLSEQAAKNSLKKLAYVRLELKNPLNGINCIQNLLKSSDLSKDQRQLLKTSTMCQKQLAKIIDDTDIESIEECYTEMNSCEFNLGEVVTVVINQVMILSQERKVQVTWDSPVEVSQLYLIGDNLRLQQVLSDFLTTAILFTPFEDSSVHFRVIPRKERIGTKMYIMHLEFRITHPSPGIPDDLIQHMFHYSRSISREGFGLYISQKLVKIMDGTVQYLREADRSSFIILVEFPLMEKKNN*