Gene Details:
- Gene ID: Solyc01g059870
- Gene Symbol: phyB1
- Gene Name: Phytochrome B1
- Genome: Tomato Genome version SL4.0
- Species: Solanum lycopersicum
Functional Descriptions:
- We report that SlphyF acts as a red/far-red light reversible low fluence sensor, likely through the formation of heterodimers with SlphyB1 and SlphyB2.
- Our data further suggest that phyB2 requires the presence of either phyB1 or phyF during seedling de-etiolation in red light, probably via heterodimerization, while phyB1 homodimers are required and sufficient to suppress hypocotyl elongation in red light.
- During the end-of-day far-red response, phyF works additively with phyB1 and phyB2.
- The response to photoperiod is redundantly regulated by phyB1 and phyF.
Function-related keywords:
Literature:
- Phytochrome F mediates red light responsiveness additively with phytochromes B1 and B2 in tomato. DOI: 10.1093/plphys/kiad028 ; PMID: 36670526
Related News:
Gene Resources:
Orthologs:
Sequences:
cDNA Sequence
- >Solyc01g059870.4.1
TAATAGACCTAGAACCTCATGCAAGATAAAACAGTTAATATTATATAGTTTATTATACACACTCAAAGTTAAAAAAAGGTCACAATCACTCTCTTGAGGATCATGAGTATGTATTAGTCTTAGGCAAATTAAAAATACAGCTACTCAATCAACCAATTAAGTTATGATTATTTTTGGACTTAAATTTGAGGGTAAAAAAGTATTGGAGACCAAAAAAAAAAATACTGTTGGATAAACAGGTCCACCATATTGCTTCAATTACTAGTAGTATAAAATTATGACAACCCCATTTGTGTATTCAACCAAAAATTCAATCTTTTTTGAGTTTCCCAAAAGTAATCTGTTTTAGGGTTTTGAAATTGACAAGTTTTTCTATGTAATAGCAAGAAAAATTTTGTTTGGAAGAGAGAAAAATGGCTTCTGGAAGTAGAACAAAGCATTCTTATCATAATTCATCACAAGGTCAAGCTCAATCTTCAGGTACAAGTAATATGAATTACAAAGATTCAATAAGCAAAGCTATAGCACAATACACAGCTGATGCTAGGCTTCATGCTGTGTTTGAACAATCTGGTGAGTCTGGAAAGTCTTTTGATTATTCACAGTCTGTTAAAACTACTACACAATCTGTGCCTGAAAGGCAAATTACTGCTTATTTGACTAAAATTCAAAGAGGAGGTCATATTCAGCCTTTTGGTTGTATGATAGCTGTAGATGAGGCTAGTTTTCGTATTATAGCTTATAGTGAAAATGCCTGTGAAATGCTTAGTTTAACTCCACAATCTGTTCCAAGCCTAGACAAGTCTGAGATCCTCACTGTTGGAACTGATGTTAGGACCCTTTTTACCCCTTCTAGCTCTGTTTTGCTAGAAAGAGCATTCGGGGCACGTGAGATCACTTTACTCAACCCAATTTGGATTCATTCCAAGAATTCTGGAAAGCCCTTTTATGCAATTTTGCACAGGGTTGATGTAGGTATTGTCATTGATTTGGAGCCTGCTAGAACTGAGGACCCTGCTTTATCTATTGCTGGAGCCGTGCAGTCACAGAAACTTGCAGTGAGGGCTATTTCTCATTTGCAATCACTTCCTGGTGGGGACATTAAGCTTTTGTGTGATACTGTTGTTGAGAGTGTCAGGGAGTTAACCGGGTATGACAGGGTTATGGTATATAAATTTCATGAGGATGAACATGGAGAGGTAGTGGCTGAGAGTAAAAGATCAGATTTAGAGCCCTATATCGGTTTGCATTATCCTGCTACAGATATTCCTCAAGCTTCACGGTTTTTGTTTAAGCAGAACAGGGTGAGAATGATTGTGGACTGCCATGCTACCCCTGTGCGGGTTACTCAGGATGAATCACTGATGCAGCCTTTATGTCTAGTTGGTTCCACACTTAGAGCACCTCATGGTTGCCATGCACAGTACATGGCAAATATGGGGTCTATCGCCTCATTAACACTGGCAGTTATTATCAATGGAAATGATGAGGAAGCTGTTGGGGGTGGCCGAAATTCAATGAGGCTGTGGGGCTTGGTTGTTGGACACCACACTTCTGTTCGGTCCATTCCTTTTCCTCTTAGGTATGCATGTGAATTCCTTATGCAGGCCTTTGGACTCCAATTGAACATGGAGTTGCAATTGGCATCACAGTTGTCTGAGAAACATGTTTTAAGGACTCAAACACTGTTATGTGACATGCTCCTTCGAGACTCACCACCGGGGATTGTTACCCAAAGCCCCAGTATTATGGACCTTGTGAAGTGCGATGGTGCTGCTCTATACTACCAGCGGAAGTACTACCCATTAGGCGTCACACCAACTGAAGCTCAGATAAAGGACATTGTGGAGTGGTTATTGGCTTACCATGGAGACTCAACAGGTTTAAGTACTGACAGTTTGGCTGATGCTGGGTATCCTGGAGCAGCTTCACTTGGTGATGCAGTTTGTGGTATGGCTGTCGCTTATATAACTTCTAAAGATTTTTTGTTTTGGTTTCGCTCCCACACAGCGAAAGAAATAAAGTGGGGTGGTGCAAAGCATCATCCTGAAGACAAGGATGATGGACAGAGAATGCATCCACGTTCTTCCTTCAAGGCATTTCTGGAAGTTGTTAAAAGCCGGAGCTCACCATGGGAAAATGCCGAAATGGATGCAATCCACTCTTTGCAGCTAATTCTGCGAGATTCATTTAAGGATGCTGAGGCAAGTAATTCTAAGGCTATTGTGCATGCACTTGGGGAAATGGAGTTGCAAGGGATAGATGAACTGAGTTCTGTTGCCAGAGAAATGGTTAGATTGATTGAAACTGCAACAGCTCCCATATTTGGTGTTGATGTCAATGGCCGCATAAATGGGTGGAATGAAAAGGTCGTGGAATTGACAGGTTTATCAGCTGAAGAAGCAAAGGGGAAGTCCTTGGTTCATGATCTTCTGTATAAAGAATCACAGGAGAGTGCTGAGAAACTTCTGTACAATGCTCTAAGAGGCGTGGAAGGTAAAAATGTAGAAATAAAGTTGAGGACATTTGGAGCTGAACAAGTGGAGAAAGCTGTTTTTTTGGTGGTTAATGCTTGCTCCAGCAGAGATTACACAAACAGCATTGTTGGTGTTTCCTTTGTTGGGCAGGATGTTACTGGGGAAAAAATTGTTATGGACAAGTTTATTCACATTCAAGGTGATTACAAGGCCATTGTGCACAGCCCCAATCCTCTGATCCCTCCCATATTTGCATCAGATGAGAACACTTCTTGCTCTGAGTGGAACACTGCCATGGAAAAGCTTTCTGGTTGGTCTAGAGAGGAGATTGTTGGAAAAATGTTAGTTGGTGAAATTTTTGGAAGTTGTTGTCGGCTCAAGGGCCCAGATGCCATGACAAAGTTCATGATCGTGTTGCATAATGCAATCGGAGGCCAGGACACAGACAAGTTTCCATTTTCCTTTTTTGACCGAAATGGGAAATATGTGCAAGCTCTTTTGACAGCAAACAAGAGAGTCAATATGGAGGGTGATACTATTGGGGCTTTCTGTTTTATACAGATAGCCAGTCCCGAATTGCAGCAAGCTCTAAGAGTTCAAAGGCAACAGGAAAAGAAGTGTTATTCTCAGATGAAAGAGCTGGCATACATTTGTCAGGAAGTAAAAAGTCCTCTTAATGGTATACGCTTTACAAATTCATTGTTGGAGGCCACAAATTTGACAGAATATCAGAAGCAGTATCTAGAGACAAGTGCTGCTTGTGAGAGGCAGATGTCTAAGATCATAAGGGATGTTGATCTGGAAAACATTGAGGATGGTTCACTGACCCTTGAGAAAGAAGATTTTTTTCTTGGGAGTGTAATAGATGCTGTTGTAAGCCAAGTGATGTTATTGCTGAGGGAAAAAGGTGTGCAGTTAATCCGTGATATACCAGAGGAAATTAAGACATTAACAGTACATGGTGATCAAGTGAGAATTCAACAGGTCTTGGCAGATTTCTTGTTGAACATGGTGCGGTATGCACCATCACCTGATGGGTGGGTAGAGATCCAACTTCGACCAAGTATGATGCCAATATCTGATGGAGCAACTGTTGTGCATATTGAACTCAGGATTATATGCCCTGGCGAAGGGCTTCCTCCTGAATTGGTTCAAGACATGTTCCACAGCAGTCGGTGGGTAACTCAGGAAGGCCTAGGACTGAGCATGTGTAGAAAAATGTTAAAGCTTATGAATGGAGAAATCCAATATATCAGAGAATCAGAAAGATGCTATTTCATGATTATCCTTGACCTGCCAATGACCCGCAAAGGTCCAAAGAGTGTTGGCTAGGAGCTTACAGCACACAGTAAGAGAAGAACCTGTAATATCTCTTAAAATTGCATGCTGGTGAGATTCTGGTGATGCCTCTGATCCTTTAATGGAACTTGACACAGGAGAGAGCAAGTATGGGGGATTGATCGGCATCTTTCTAACAGTATTAAACCAGCTGTTTCCAGCATTTTCCGACTTGAATTTGCTGGGTTTTTTATAACTCTGAACTAGTAGTCTCTCAGCATGTCAAGTTGAGAAAGCTATTGCTCCTTAGTGCATGGTTTTTACCAAAGATTAATTCGACATAGTAAGTGGCTAATGGCCAAATAATTGGAAAATGGTTAGCATGATTCCAAATTAATTGATCCCAGAGCTGTTGTGTGTAGCATAACAAGTGTATTGTTGTATAAAAGGTGGAATAAATGTCATCCTTTCTATGTCTGGATGAATGGTGTCTCCCACTCTTTGTAACATTAGGATTTGTGTAACATGAACATACTGAGAATCTTATATGACTTGGTGGTTCATTTTCTTCCGATTTCTGGAATTAATTTTATGGAATTTGGACTCTTCTTGCTTAATGAATTCTTCATTC
CDS Sequence
- >Solyc01g059870.4.1
ATGGCTTCTGGAAGTAGAACAAAGCATTCTTATCATAATTCATCACAAGGTCAAGCTCAATCTTCAGGTACAAGTAATATGAATTACAAAGATTCAATAAGCAAAGCTATAGCACAATACACAGCTGATGCTAGGCTTCATGCTGTGTTTGAACAATCTGGTGAGTCTGGAAAGTCTTTTGATTATTCACAGTCTGTTAAAACTACTACACAATCTGTGCCTGAAAGGCAAATTACTGCTTATTTGACTAAAATTCAAAGAGGAGGTCATATTCAGCCTTTTGGTTGTATGATAGCTGTAGATGAGGCTAGTTTTCGTATTATAGCTTATAGTGAAAATGCCTGTGAAATGCTTAGTTTAACTCCACAATCTGTTCCAAGCCTAGACAAGTCTGAGATCCTCACTGTTGGAACTGATGTTAGGACCCTTTTTACCCCTTCTAGCTCTGTTTTGCTAGAAAGAGCATTCGGGGCACGTGAGATCACTTTACTCAACCCAATTTGGATTCATTCCAAGAATTCTGGAAAGCCCTTTTATGCAATTTTGCACAGGGTTGATGTAGGTATTGTCATTGATTTGGAGCCTGCTAGAACTGAGGACCCTGCTTTATCTATTGCTGGAGCCGTGCAGTCACAGAAACTTGCAGTGAGGGCTATTTCTCATTTGCAATCACTTCCTGGTGGGGACATTAAGCTTTTGTGTGATACTGTTGTTGAGAGTGTCAGGGAGTTAACCGGGTATGACAGGGTTATGGTATATAAATTTCATGAGGATGAACATGGAGAGGTAGTGGCTGAGAGTAAAAGATCAGATTTAGAGCCCTATATCGGTTTGCATTATCCTGCTACAGATATTCCTCAAGCTTCACGGTTTTTGTTTAAGCAGAACAGGGTGAGAATGATTGTGGACTGCCATGCTACCCCTGTGCGGGTTACTCAGGATGAATCACTGATGCAGCCTTTATGTCTAGTTGGTTCCACACTTAGAGCACCTCATGGTTGCCATGCACAGTACATGGCAAATATGGGGTCTATCGCCTCATTAACACTGGCAGTTATTATCAATGGAAATGATGAGGAAGCTGTTGGGGGTGGCCGAAATTCAATGAGGCTGTGGGGCTTGGTTGTTGGACACCACACTTCTGTTCGGTCCATTCCTTTTCCTCTTAGGTATGCATGTGAATTCCTTATGCAGGCCTTTGGACTCCAATTGAACATGGAGTTGCAATTGGCATCACAGTTGTCTGAGAAACATGTTTTAAGGACTCAAACACTGTTATGTGACATGCTCCTTCGAGACTCACCACCGGGGATTGTTACCCAAAGCCCCAGTATTATGGACCTTGTGAAGTGCGATGGTGCTGCTCTATACTACCAGCGGAAGTACTACCCATTAGGCGTCACACCAACTGAAGCTCAGATAAAGGACATTGTGGAGTGGTTATTGGCTTACCATGGAGACTCAACAGGTTTAAGTACTGACAGTTTGGCTGATGCTGGGTATCCTGGAGCAGCTTCACTTGGTGATGCAGTTTGTGGTATGGCTGTCGCTTATATAACTTCTAAAGATTTTTTGTTTTGGTTTCGCTCCCACACAGCGAAAGAAATAAAGTGGGGTGGTGCAAAGCATCATCCTGAAGACAAGGATGATGGACAGAGAATGCATCCACGTTCTTCCTTCAAGGCATTTCTGGAAGTTGTTAAAAGCCGGAGCTCACCATGGGAAAATGCCGAAATGGATGCAATCCACTCTTTGCAGCTAATTCTGCGAGATTCATTTAAGGATGCTGAGGCAAGTAATTCTAAGGCTATTGTGCATGCACTTGGGGAAATGGAGTTGCAAGGGATAGATGAACTGAGTTCTGTTGCCAGAGAAATGGTTAGATTGATTGAAACTGCAACAGCTCCCATATTTGGTGTTGATGTCAATGGCCGCATAAATGGGTGGAATGAAAAGGTCGTGGAATTGACAGGTTTATCAGCTGAAGAAGCAAAGGGGAAGTCCTTGGTTCATGATCTTCTGTATAAAGAATCACAGGAGAGTGCTGAGAAACTTCTGTACAATGCTCTAAGAGGCGTGGAAGGTAAAAATGTAGAAATAAAGTTGAGGACATTTGGAGCTGAACAAGTGGAGAAAGCTGTTTTTTTGGTGGTTAATGCTTGCTCCAGCAGAGATTACACAAACAGCATTGTTGGTGTTTCCTTTGTTGGGCAGGATGTTACTGGGGAAAAAATTGTTATGGACAAGTTTATTCACATTCAAGGTGATTACAAGGCCATTGTGCACAGCCCCAATCCTCTGATCCCTCCCATATTTGCATCAGATGAGAACACTTCTTGCTCTGAGTGGAACACTGCCATGGAAAAGCTTTCTGGTTGGTCTAGAGAGGAGATTGTTGGAAAAATGTTAGTTGGTGAAATTTTTGGAAGTTGTTGTCGGCTCAAGGGCCCAGATGCCATGACAAAGTTCATGATCGTGTTGCATAATGCAATCGGAGGCCAGGACACAGACAAGTTTCCATTTTCCTTTTTTGACCGAAATGGGAAATATGTGCAAGCTCTTTTGACAGCAAACAAGAGAGTCAATATGGAGGGTGATACTATTGGGGCTTTCTGTTTTATACAGATAGCCAGTCCCGAATTGCAGCAAGCTCTAAGAGTTCAAAGGCAACAGGAAAAGAAGTGTTATTCTCAGATGAAAGAGCTGGCATACATTTGTCAGGAAGTAAAAAGTCCTCTTAATGGTATACGCTTTACAAATTCATTGTTGGAGGCCACAAATTTGACAGAATATCAGAAGCAGTATCTAGAGACAAGTGCTGCTTGTGAGAGGCAGATGTCTAAGATCATAAGGGATGTTGATCTGGAAAACATTGAGGATGGTTCACTGACCCTTGAGAAAGAAGATTTTTTTCTTGGGAGTGTAATAGATGCTGTTGTAAGCCAAGTGATGTTATTGCTGAGGGAAAAAGGTGTGCAGTTAATCCGTGATATACCAGAGGAAATTAAGACATTAACAGTACATGGTGATCAAGTGAGAATTCAACAGGTCTTGGCAGATTTCTTGTTGAACATGGTGCGGTATGCACCATCACCTGATGGGTGGGTAGAGATCCAACTTCGACCAAGTATGATGCCAATATCTGATGGAGCAACTGTTGTGCATATTGAACTCAGGATTATATGCCCTGGCGAAGGGCTTCCTCCTGAATTGGTTCAAGACATGTTCCACAGCAGTCGGTGGGTAACTCAGGAAGGCCTAGGACTGAGCATGTGTAGAAAAATGTTAAAGCTTATGAATGGAGAAATCCAATATATCAGAGAATCAGAAAGATGCTATTTCATGATTATCCTTGACCTGCCAATGACCCGCAAAGGTCCAAAGAGTGTTGGCTAG
Protein Sequence
- >Solyc01g059870.4.1
MASGSRTKHSYHNSSQGQAQSSGTSNMNYKDSISKAIAQYTADARLHAVFEQSGESGKSFDYSQSVKTTTQSVPERQITAYLTKIQRGGHIQPFGCMIAVDEASFRIIAYSENACEMLSLTPQSVPSLDKSEILTVGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVTQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGGGRNSMRLWGLVVGHHTSVRSIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPPGIVTQSPSIMDLVKCDGAALYYQRKYYPLGVTPTEAQIKDIVEWLLAYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEASNSKAIVHALGEMELQGIDELSSVAREMVRLIETATAPIFGVDVNGRINGWNEKVVELTGLSAEEAKGKSLVHDLLYKESQESAEKLLYNALRGVEGKNVEIKLRTFGAEQVEKAVFLVVNACSSRDYTNSIVGVSFVGQDVTGEKIVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTSCSEWNTAMEKLSGWSREEIVGKMLVGEIFGSCCRLKGPDAMTKFMIVLHNAIGGQDTDKFPFSFFDRNGKYVQALLTANKRVNMEGDTIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELAYICQEVKSPLNGIRFTNSLLEATNLTEYQKQYLETSAACERQMSKIIRDVDLENIEDGSLTLEKEDFFLGSVIDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVRYAPSPDGWVEIQLRPSMMPISDGATVVHIELRIICPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKMLKLMNGEIQYIRESERCYFMIILDLPMTRKGPKSVG*