Information report for CYC-B
Gene Details
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Functional Descriptions
- Targeted disruption of tomato chromoplast-specific lycopene β-cyclase (CYC-B) gene promotes early accumulation of lycopene in fruits and enhanced postharvest cold tolerance.
- CYC-B knockout lines exhibited indeterminate growth and increased lycopene content in the fruit, overcoming the existing genetic linkage between these traits.
- High-lycopene tomato genotypes containing knockout mutations within the lycopene catabolic CYC-B gene include the spontaneous old-gold (og) or old-gold crimson (ogc) mutations, and the chemically-induced mutation A949G.
- CRISPR/Cas9 to generate knockout variants of CYC-B (Solyc06g074240) in two indeterminate elite tomato genotypes (LT16 and LT46) harbouring wild-type (WT) SP alleles
Functional Keywords
- growth , tolerance , cold-tolerance , cold
Literature and News
Gene Resources
- NCBI ID: 543649
- UniProt accessions: A0A3Q7E952
- AlphaFoldDB: A0A3Q7E952
- EnsemblPlants: Solyc01g008930.3.1
- Gramene: Solyc01g008930.3.1
- GO: GO:0010024 , GO:0016636 , GO:0050897
- OMA: FYDANQY
- InterPro: IPR009249
- PANTHER: PTHR34557 , PTHR34557:SF1
- Gene3D: 3.40.1500.20
- Pfam: PF05996
- STRING: 4081.A0A3Q7E952
Sequences
cDNA Sequence
- >Solyc06g074240.3.1
ATGGAAACTCTTCTCAAGCCTTTTCCATCTCTTTTACTTTCCTCTCCTACACCCTATAGGTCTATTGTCCAACAAAATCCTTCTTTTCTAAGTCCCACCACCAAAAAAAAATCAAGAAAATGTCTTCTTAGAAACAAAAGTAGTAAACTTTTTTGTAGCTTTCTTGATTTAGCACCCACATCAAAGCCAGAGTCTTTAGATGTTAACATCTCATGGGTTGATCCTAATTCGAATCGGGCTCAATTCGACGTGATCATTATCGGAGCTGGCCCTGCTGGGCTCAGGCTAGCTGAACAAGTTTCTAAATATGGTATTAAGGTATGTTGTGTTGACCCTTCACCACTCTCCATGTGGCCAAATAATTATGGTGTTTGGGTTGATGAGTTTGAGAATTTAGGACTGGAAGATTGTTTAGATCATAAATGGCCTATGACTTGTGTGCATATAAATGATAACAAAACTAAGTATTTGGGAAGACCATATGGTAGAGTTAGTAGAAAGAAGCTGAAGTTGAAATTGTTGAATAGTTGTGTTGAGAACAGAGTGAAGTTTTATAAAGCTAAGGTTTGGAAAGTGGAACATGAAGAATTTGAGTCTTCAATTGTTTGTGATGATGGTAAGAAGATAAGAGGTAGTTTGGTTGTGGATGCAAGTGGTTTTGCTAGTGATTTTATAGAGTATGACAGGCCAAGAAACCATGGTTATCAAATTGCTCATGGGGTTTTAGTAGAAGTTGATAATCATCCATTTGATTTGGATAAAATGGTGCTTATGGATTGGAGGGATTCTCATTTGGGTAATGAGCCATATTTAAGGGTGAATAATGCTAAAGAACCAACATTCTTGTATGCAATGCCATTTGATAGAGATTTGGTTTTCTTGGAAGAGACTTCTTTGGTGAGTCGTCCTGTTTTATCGTATATGGAAGTAAAAAGAAGGATGGTGGCAAGATTAAGGCATTTGGGGATCAAAGTGAAAAGTGTTATTGAGGAAGAGAAATGTGTGATCCCTATGGGAGGACCACTTCCGCGGATTCCTCAAAATGTTATGGCTATTGGTGGGAATTCAGGGATAGTTCATCCATCAACAGGGTACATGGTGGCTAGGAGCATGGCTTTAGCACCAGTACTAGCTGAAGCCATCGTCGAGGGGCTTGGCTCAACAAGAATGATAAGAGGGTCTCAACTTTACCATAGAGTTTGGAATGGTTTGTGGCCTTTGGATAGAAGATGTGTTAGAGAATGTTATTCATTTGGGATGGAGACATTGTTGAAGCTTGATTTGAAAGGGACTAGGAGATTGTTTGACGCTTTCTTTGATCTTGATCCTAAATACTGGCAAGGGTTCCTTTCTTCAAGATTGTCTGTCAAAGAACTTGGTTTACTCAGCTTGTGTCTTTTCGGACATGGCTCAAACATGACTAGGTTGGATATTGTTACAAAATGTCCTCTTCCTTTGGTTAGACTGATTGGCAATCTAGCAATAGAGAGCCTTTGA
CDS Sequence
- >Solyc06g074240.3.1
ATGGAAACTCTTCTCAAGCCTTTTCCATCTCTTTTACTTTCCTCTCCTACACCCTATAGGTCTATTGTCCAACAAAATCCTTCTTTTCTAAGTCCCACCACCAAAAAAAAATCAAGAAAATGTCTTCTTAGAAACAAAAGTAGTAAACTTTTTTGTAGCTTTCTTGATTTAGCACCCACATCAAAGCCAGAGTCTTTAGATGTTAACATCTCATGGGTTGATCCTAATTCGAATCGGGCTCAATTCGACGTGATCATTATCGGAGCTGGCCCTGCTGGGCTCAGGCTAGCTGAACAAGTTTCTAAATATGGTATTAAGGTATGTTGTGTTGACCCTTCACCACTCTCCATGTGGCCAAATAATTATGGTGTTTGGGTTGATGAGTTTGAGAATTTAGGACTGGAAGATTGTTTAGATCATAAATGGCCTATGACTTGTGTGCATATAAATGATAACAAAACTAAGTATTTGGGAAGACCATATGGTAGAGTTAGTAGAAAGAAGCTGAAGTTGAAATTGTTGAATAGTTGTGTTGAGAACAGAGTGAAGTTTTATAAAGCTAAGGTTTGGAAAGTGGAACATGAAGAATTTGAGTCTTCAATTGTTTGTGATGATGGTAAGAAGATAAGAGGTAGTTTGGTTGTGGATGCAAGTGGTTTTGCTAGTGATTTTATAGAGTATGACAGGCCAAGAAACCATGGTTATCAAATTGCTCATGGGGTTTTAGTAGAAGTTGATAATCATCCATTTGATTTGGATAAAATGGTGCTTATGGATTGGAGGGATTCTCATTTGGGTAATGAGCCATATTTAAGGGTGAATAATGCTAAAGAACCAACATTCTTGTATGCAATGCCATTTGATAGAGATTTGGTTTTCTTGGAAGAGACTTCTTTGGTGAGTCGTCCTGTTTTATCGTATATGGAAGTAAAAAGAAGGATGGTGGCAAGATTAAGGCATTTGGGGATCAAAGTGAAAAGTGTTATTGAGGAAGAGAAATGTGTGATCCCTATGGGAGGACCACTTCCGCGGATTCCTCAAAATGTTATGGCTATTGGTGGGAATTCAGGGATAGTTCATCCATCAACAGGGTACATGGTGGCTAGGAGCATGGCTTTAGCACCAGTACTAGCTGAAGCCATCGTCGAGGGGCTTGGCTCAACAAGAATGATAAGAGGGTCTCAACTTTACCATAGAGTTTGGAATGGTTTGTGGCCTTTGGATAGAAGATGTGTTAGAGAATGTTATTCATTTGGGATGGAGACATTGTTGAAGCTTGATTTGAAAGGGACTAGGAGATTGTTTGACGCTTTCTTTGATCTTGATCCTAAATACTGGCAAGGGTTCCTTTCTTCAAGATTGTCTGTCAAAGAACTTGGTTTACTCAGCTTGTGTCTTTTCGGACATGGCTCAAACATGACTAGGTTGGATATTGTTACAAAATGTCCTCTTCCTTTGGTTAGACTGATTGGCAATCTAGCAATAGAGAGCCTTTGA
Protein Sequence
- >Solyc06g074240.3.1
METLLKPFPSLLLSSPTPYRSIVQQNPSFLSPTTKKKSRKCLLRNKSSKLFCSFLDLAPTSKPESLDVNISWVDPNSNRAQFDVIIIGAGPAGLRLAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFENLGLEDCLDHKWPMTCVHINDNKTKYLGRPYGRVSRKKLKLKLLNSCVENRVKFYKAKVWKVEHEEFESSIVCDDGKKIRGSLVVDASGFASDFIEYDRPRNHGYQIAHGVLVEVDNHPFDLDKMVLMDWRDSHLGNEPYLRVNNAKEPTFLYAMPFDRDLVFLEETSLVSRPVLSYMEVKRRMVARLRHLGIKVKSVIEEEKCVIPMGGPLPRIPQNVMAIGGNSGIVHPSTGYMVARSMALAPVLAEAIVEGLGSTRMIRGSQLYHRVWNGLWPLDRRCVRECYSFGMETLLKLDLKGTRRLFDAFFDLDPKYWQGFLSSRLSVKELGLLSLCLFGHGSNMTRLDIVTKCPLPLVRLIGNLAIESL*