Information report for VIT_00s0283g00020
Gene Details
|
|
Functional Annotation
- RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2.
Homologous
- Arabidopsis thaliana — AT5G07350
Gene Resources
- Pfam: PF00565 PF00567
- UniProt: D7TYP5
- RefSeq: XP_002273150.1
- EMBL: FN596273
- AlphaFoldDB: D7TYP5
- OMA: ARCADHH
- InterPro: IPR002999 , IPR016071 , IPR016685 , IPR035437 , IPR047395
- PANTHER: PTHR12302 , PTHR12302:SF2
- SUPFAM: SSF50199 , SSF63748
- PROSITE: PS50304 , PS50830
- Gene3D: 2.30.30.140 , 2.40.50.90
- OrthoDB: D7TYP5
- CDD: cd20443
- eggNOG: KOG2039
- STRING: 29760.D7TYP5
- HOGENOM: CLU_005966_2_0_1
Sequences
CDS Sequence
- >VIT_00s0283g00020
ATGGCGTCTTCATCATCGTCGACTGTAGCTGGCGCCACAGGATGGTTGAGAGGAAAGGTGAAAGCTGTTCCTTCGGGAGACTGCTTAGTGATAATGGGAAACTCCAAGGGCGATAGCCCTCCGCCAGAGAGGACAATAACTTTATCATCTCTGATTGCTCCCAGATTGGCCCGTAGGGGTGGAGTTGATGAGCCGTTTGCATGGGACAGCAGAGAGTATTTAAGGAAGCTCTGCATTGGAAAGGAAGTCACTTTCAGAGTTGATTATACTGTACCATCCATTGGAAGAGAATTTGGCTCCGTTTTCCTTGGCGACAAAAATGTTTCGGTGCTGGTTGTTTCTGAAGGCTGGGCAAGGGTAAGGGAGACAGGTCAACAGAAAGGAGAAGTAAGTCCTGTCCTTGCAGAATTGCTTCGCCTTGAAGAGCAAGCTAAGCAACAATGTCTAGGTCGTTGGAGCAAGACACCTGGTGCTTCTGAGCTATCCATCAGGAACTTACCTCCCTCAGCCATTGGTGATCCTAGTAACTTGGATGCCATGGGCCTACTCAATGCAAACAAGGGTAGGGCCATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGGCTCCATCAATGGGAAGAAGAGCTGCAGCAGAAGCCATTGTTGAGACAGAACTGGCATCTGATGAGCCAAATGGAGAAGGATCTGCTGAAACTCGGCCTGCTTTAACATCAGCACAGAGGTTGGCAGCATCAACAGCATCCTCTAATGAAGTTGCCCCTGAACCATTTGGGAAGGAAGCTAAACACTTCACTGAGATTCGTGTTTTGCATAGGGAGGTCCGTATCGTATTAGAAGGTGTTGACAAATTTGGCAATTTGATCGGTTCAGTATATTATCCCGATGGTGAATCAGCAAAGGACCTAGCACTGGAGCTTGTAGAAAGTGGTTTAGCTAAATATCTAGAATGGAGTGCTAGTATGATGGAAGAAGATGCCAAACGGCGGCTGAAGTCTGCAGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAGTGGTTGAGGTTGTAAGTGGGGATTGCATCATTGTAGCTGATGATTCTCTCCCATTCGGCAGCCCATTAGCAGAACGACGAGTTAACCTCTCCAGTATCAGGTGTCCAAAAATGGGCAATCCTCGTAGAGATGAAAGACCTGCTCCCTACGCCCGTGAAGCAAGGGAGTTTCTACGGACACGGCTTATTGGCCAACAAGTGAATGTTTCAATGGAATATTCTAGGAAGGTAGGCTTGGCAGATGGACCCACAACTGCTTCTGCAGATTCTAGGGTAATGGATTTTGGATCAGTCTTCCTGGTCTCTCCTACTAAGGTTGAGGCTGATGGTGCATCCACACCTGCTATATCTACTGCTGGAAGTCAGCATGCTGGGGTAAATGTTGCTGAGCTAGTTGTTGCCCGTGGCTTTGGCACTGTCATCAGGCATCGAGATTTTGAGGAAAGATCAAACTATTATGATGCTCTCCTTGCTGCTGAATCGCGTGCTATTTCTGGGAGAAAAGGAATCCATTCTGCAAAGGATCCTCCAGTGATGCATATAACAGACTTGCTTATGGCATCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTCTGCAAAGGGTTAGGAGGATGCCTGCCATTGTGGAATATGTCCTCAGTGGTCACCGCTTTAAACTGTTGATTCCTAAGGAAACATGTAGCATTGCTTTCTCGTTCTCTGGTGTTCGATGTCCTGGTCGTGATGAGCCTTTTTCAGACGAAGCAATTGCACTAATGAGACGAAAGATAATGCAAAGAGATGTCGAAATTGAAGTGGAAACTGTTGATAGAACTGGAACTTTCTTGGGATCTCTATGGGAGGCAAAAACCAACATGGCAGTGACACTTCTTGAGGCTGGACTAGCAAAGCTTCAAACTTCCTTTGGCAGTGACAGGATCCCCGATGCTCACCTTCTTGCTCAGGCTGAGCAGTCTGCGAAAAAGCAAAAACTAAAAATATGGGAAAACTATGTAGAAGGAGAAGAAGTTTCTAATGGGTCAGCTACTGAAAGCAAACAGAAAGAAGTGCTTAAGGTAGTGGTTACTGAAATTTTAGGTGGTGGTAGATTTTATGTCCAGACAATCGGAGATCAGAGAGTAGCCTCTATTCAGCAGCAGCTTGCTTCTCTGAATCTTCAAGAAGCTCCTGTCATTGGTGCTTTTAATCCTAAGAAGGGTGACATTGTCCTTGCGCAATTTAGTGCAGATAATTCGTGGAACCGAGCAATGATTGTTAATGCACCTCGGGGGGCTGTTGAATCCCCAAAAGACAAATTTGAAGTGTTCTACATTGACTATGGAAATCAAGAAATTATTCCTTACAGTCAGTTGAGGCCACTTGATCCTTCAGTGTCCTCTGCTCCTGGCCTTGCTCAGCTATGCAGCCTTGCATACATAAAGGTTCCGAGCTTGGATGAGGATTTTGGTCAAGAAGCAGCTGAGCATTTTAGTGATATGACATTAAATAGTTCAAAAGAGCTCAGGGCTGTGATTGAGGATAAGGATACTTCAGGAGGAAAAGTGAAAGGACAAGGAACTGGGATAGTCCTTATTGTAACTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGGAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAACAGATAGCATTTGATAATTTGGAAAAATTCCAGGCAGAAGCACGACTTAACAGGCTAAGGATGTGGCAGTATGGGGATATTCAGTCAGATGATGAGGACACAGCTCCACCTGTTAGAAAGGCTGGTGGTCGGCGATTAATAAAAGCTTCAACATCCTGA
Protein Sequence
- >VIT_00s0283g00020
MASSSSSTVAGATGWLRGKVKAVPSGDCLVIMGNSKGDSPPPERTITLSSLIAPRLARRGGVDEPFAWDSREYLRKLCIGKEVTFRVDYTVPSIGREFGSVFLGDKNVSVLVVSEGWARVRETGQQKGEVSPVLAELLRLEEQAKQQCLGRWSKTPGASELSIRNLPPSAIGDPSNLDAMGLLNANKGRAMQGIVEQVRDGSTIRVYLLPEFQFVQVFVAGIQAPSMGRRAAAEAIVETELASDEPNGEGSAETRPALTSAQRLAASTASSNEVAPEPFGKEAKHFTEIRVLHREVRIVLEGVDKFGNLIGSVYYPDGESAKDLALELVESGLAKYLEWSASMMEEDAKRRLKSAELQAKKNRLRFWTNYVPPPTNSKAIHDQNFTGKVVEVVSGDCIIVADDSLPFGSPLAERRVNLSSIRCPKMGNPRRDERPAPYAREAREFLRTRLIGQQVNVSMEYSRKVGLADGPTTASADSRVMDFGSVFLVSPTKVEADGASTPAISTAGSQHAGVNVAELVVARGFGTVIRHRDFEERSNYYDALLAAESRAISGRKGIHSAKDPPVMHITDLLMASAKKAKDFLPFLQRVRRMPAIVEYVLSGHRFKLLIPKETCSIAFSFSGVRCPGRDEPFSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWEAKTNMAVTLLEAGLAKLQTSFGSDRIPDAHLLAQAEQSAKKQKLKIWENYVEGEEVSNGSATESKQKEVLKVVVTEILGGGRFYVQTIGDQRVASIQQQLASLNLQEAPVIGAFNPKKGDIVLAQFSADNSWNRAMIVNAPRGAVESPKDKFEVFYIDYGNQEIIPYSQLRPLDPSVSSAPGLAQLCSLAYIKVPSLDEDFGQEAAEHFSDMTLNSSKELRAVIEDKDTSGGKVKGQGTGIVLIVTLIDVEAESSINAAMLKEGLATVEKRKRWDPKEKQIAFDNLEKFQAEARLNRLRMWQYGDIQSDDEDTAPPVRKAGGRRLIKASTS