Information report for TraesROB_scaffold_121217_01G000400
Gene Details
|
|
Functional Annotation
- Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Homologous
- Triticum aestivum: TraesCS4D02G342300
Gene Resources
- Pfam: PF00271 PF02170 PF04851 PF00636
- UniProt: A0A9R1H119
- EMBL: CM022222
- InterPro: IPR000999 , IPR001650 , IPR003100 , IPR005034 , IPR011545 , IPR011907 , IPR014001 , IPR014720 , IPR027417 , IPR036085 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF37
- SUPFAM: SSF101690 , SSF52540 , SSF54768 , SSF69065
- PROSITE: PS00517 , PS50137 , PS50142 , PS50821 , PS51192 , PS51194 , PS51327
- Gene3D: 1.10.1520.10 , 2.170.260.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- OrthoDB: A0A9R1H119
- CDD: cd00593 , cd02844 , cd18034 , cd18802 , cd19869
- STRING: 4565.A0A3B6JPW7
Sequences
CDS Sequence
- >TraesROB_scaffold_121217_01G000400
ATGCCCCTGTCGGGACGCCGTAAATATCATTGCTCTTCGGTCAGTCACTCACTCGAGCCACCACTGTCAGCGAGAGAGAGAAGGGCAAGAGAAGGGCAGGCAGGCAAGGCGAGCACTCACCTGCTGTACCGCGCGCAGACGGGCGGCATCAATCGGGCTGCAGCTGCGGGGGAGATGGCGGGAGGCGGCGGAGGCGAGCAGCCGGGGGCGGTGTCCTACTGGTACGACGCGTGCGAGGACGAGGACGACCCGTCGCTGCTCTTCGACTTCGCCGCGTCCGCCGACTTCGGCCCCGCCATGGACAGCGGCGGCATCGACTTCGCCCCGGGGCTCATGCCCTTGCCCGCCATGGACTGCGGCATCGACTTCGCGTCCGCGGATTTCGACCCGGGGCTCTTGCCCGCCATGGACTGCGGCGTCGAAGACGGCTTGGTCGACGAGATCGACCGGATACTCGAGAGCATCAACGACGAGAGCGCCCCCGCCCCCGCGCCGCAGCCGCCGCCGTCTCAGCCTGTGCCTCCCCCGCCGCCAGCAGAGCGGGTGCAGGAGGCTGCTGCTGCGGCTGTGGTCGACAATGCTGTGGCGGTGGTGGGCTCGGGGCAGAGGAGCGAGGCCGTCGAGCCGAGGAGGGAGACGAGAATCGTCGAGCCGAGGAAGGAGACGAGAAGCGTCGACCCAAGGAGGGAGACGAGAAGGGAGTCGCACGGCGGTTCCACGAACGGCGGCCGCAGCGGGGAGTGGAGAGACGGGAAGCGTCCTCGCCTCGCCCCTGGGGCTCACGGGGAGCCGCGCCCTGATTCGCGGCGGCGCCCCATGCTGCCGCCGCCCTCGCGTGCTTGGGAGGAACGGCGTGGGAGGCGCGACTTCGTCGACAGGCCCCGCAAGCGCGACCGCGACAGTAACCCTGCCCACCGGCGCGAGGCTCGAGGGTTCTGGGAGCGGGACCGCGGCGGCAAGATGGTGTTCCGCCCTGGCACCTGGGAGCAGGAGTCTGAGCGCGAGGGAAAGCGTGCCAGGACACAGAGCGGAGGCTCCGTGGAGAAGAATGCAGAGGCGGATAAGGCGGCTTCCGCCCAGAAGGAGAAGCCTCTCGCCGAGGAGCAGGCGAGACATTACCAGTTGGAGGTGCTTGAGCAAGCAAAGAGCAGGAACACCATAGCCTTCCTCGAGACCGGCGCGGGGAAGACCCTCATTGCTGTGCTGCTCATCAAAAGCATATGTGACAAAATGATGAAGGAGAACAGGAAAATACTTGCCGTGTTCTTGGTTCCCAAGGTGCCTCTTGTGTATCAGCAAGCTGAGGTGATACGTGAGAGGACTGGCTATCGGGTTGGGCACTACTGCGGAGAGATGGGTCAGGATTTCTGGGATGCTAGAAAGTGGCAGCGGGAGTTTGATTCGAAACAGGTACTAGTTATGACAGCTCAAATTTTGTTAAACATCCTCAGGCACAGTATCATTAAAATGGATGCCATACATCTTTTAATTTTAGACGAGTGCCATCATGCAGTGAAAAAACATCCATATTCTCTAGTGATGTCAGAATTTTATCACACAACTCCGAAGGATAAGAGACCAGTTGTTTTTGGTATGACAGCTTCTCCTGTCAACCTAAAGGGAGTCACTAGCCAAGAAGATTGTGCCATCAAGATAAGAAATCTTGAGAGTAAACTGGATTCCATTGTTTGTACTATCAAAGATCGGAAAGAGCTTGAGAAACATGTCCCCATGCCTTTTGAAGTTGTTGTCCAATATGACAAAGCAGCCACCCTTTGTTCCCTGCATGAGCAGATCAAACAAATGGAAGCTGCTGTTGAAGAAGCTGCACTCTGTAGCTCTAAGAGAACAAAGTGGCAGTTTATGGGAGCCAGGGATGCTGGGTCTAGAGATGAGCTGCGCCTTGTCTATGGTGTTTCTGAGCGTACAGAAAGTGATGGTGCAGCTAATTTAATCCAGAAGTTGAGAGCTATAAATTATGCTTTAGGTGAACTAGGACAATGGTGTGCTTATAAGGTTGCACAGTCCTTTTTGACAGTATTGCAGAATGATGAAAGGGCAAACTATCAGGTTGATGTGAAGTTTCAAGAGTCGCATTTAAAGAAGGTTGTTGATTTATTGCACTGCCAGTTGACTGAGGGAGCTGCAGTGAAAAGCGAGACGAATGATGTTGAGATGCATAACACTGAAAATCACAACCCAAGTGAACTTGAAGACGGGGAGCTGCCTGATAGCCATGCTGTTTCTGTAGGTGAACATGTCGATGAGGTCATCGGAGCTGCCGTGGCAGATGGGAAAGTTACCCCTAGGGTGCAGGCTTTAATCAAAATCCTTCTCAAGTATCAGCATACTGACGATTTCCGTGCTATCATCTTTGTGGAGCGAGTTGTCACGGCATTAGTTCTTCCTAAGGTGCTTGCAGAGCTTCCATCTTTAAGCTTTATCCGATGTGCAAGCTTGATAGGTCATAACAACAATCAAGAGATGCGCACAAGCCAAATGCAGGATACCATTGCAAAATTTCGTGATGGCCGAGTTACGCTGTTAGTTGCGACTAGTGTTGCTGAGGAAGGACTTGATATTCGACAGTGCAATGTTGTCATTCGCTTTGACCTTGCAAAGACGGTCTTGGCCTACGTACAGTCTCGTGGTCGTGCAAGAAAGCCTGGATCTGACTACATATTGATGGTTGAAAGGGGAAATCTGGCACATGAAACTTTCTTGAGGAATGCTCGAAATAGTGAGGAGACGTTGAGAAAAGAGGCTATAGAAAGAACTGATCTCAGTCATCTTGATGGTACTCTGCTAAATTCCATTGATACATCACCTGATTCAATGTATCAGGTCGAATCAACAGGTGCTGTTGTCAGCTTGAATTCTGCAGTTGGGCTCGTACATTTTTACTGTTCACAGCTACCAAGTGACAGGTACTCAATTCTTCGTCCAGAATTTATTATGCAAAAACATGAGAAGCCAGGGGGTTCCATGGAGTATTCTTGCAAACTTCAACTTCCCTGTAATGCTCCATTTGAGAAACTTGAGGGTCCTATATGCGGCTCAATTCGTCTGGCACAACAAGCTGTTTGTTTGGCTGCCTGTAAGAAGCTGCATGAGATGAATGCCTTCACAGATATGCTTTTACCTGATAGAGGAAGTGGAGAAGGAGAGAAGACCGAACAGAATGAAGGTGATCCACTCCCTGGAACGGCACGCCATAGAGAGTTTTATCCTGAAGGTGTTGCTGAAATTTTGAGAGGAGAATGGATTTTATGTGGAAGAGATGGCTGCCAAAGCACTCAATTTATTAAGTTGTATATGTATTCTGTGAATTGTGTGGACGTAGGGACATCTAAGGACCCTTCCCTTGCACAACTTTCGAATTTTTCTATTATTTTTGGCAGTGAGCTGGATGCAGAGGTTCTATCGACGCCAATGGATCTCTTTGTTGCCAGGACAATGATAACAAAGGCATCTCTTGTATTCCGTGGACCAATTGAAGTTACAGAAAGTCAGCTGGTTCTGCTGAAGGGCTTTCATGTTAGGCTCATGAGCATAGTCCTTGATGTTGATGTTGATCCCTCAACTACACCGTGGGATCCAGCAAAAGCATACCTGTTTGTCCCTGTAGGAGCTGAGAAGTGTACAGATGCTTTAAGAGAGATCGATTGGACTTTAGTCAACAACATTGTGAATACTGATGCCTGGAATAATCCACTTCAGAAGGCACGACCAGATGTCTACCTAGGCACCAATGAGAGGACACTTGGTGGAGATAAGAGAGAGTATGGGTTTGGAAAATTGCGTAATGGAACTGCTTTTGGACAGAAGGCACATCCGACTTATGGTATTAGAGGAGCCATTGCTGACTTTGATATTGTCAAAGCATCTGGATTAGTTCCTTCTCGTGATAGAGGTTATTCAAGTGACTATCAGAATCAAGGCAAGTTGTTCATGGCAGATTCATGCTGGGATGCTAAAGATCTTTCTGGAATGGTTGTCACTGCTGCCCACTCAGGAAAGCGGTTCTATGTGGACTGTATTTGCTATAACATGAATGCAGAGAATTCATTTCCTAGGAAGGAAGGCTACCTGGGGCCTTTGGAATATAGCTCATATGCCGATTACTACAAGCAGAAATATGGTGTGGAGCTAGTGTATAAGAAACAACCTCTTATACGTGCACGTGGTGTTTCCTATTGCAAGAATCTTCTGTCTCCTAGATTTGAGCATTCTGAAGCTAGAGAAGGTGACTTTTCGGAGAACGTTGACAAAACATACTATGTGTATTTACCACCTGAACTTTGCCTTGTGCACCCACTTCCTGGATCACTTATTCGTGGAGCTCAAAGGTTGCCATCGATAATGAGAAGGGTTGAGAGTATGCTTCTTGCAGTTCAATTGAAGGAAACAATTGATTATCCTGTTCCTGCAGTTAAGATATTAGAAGCCTTGACTGCTGCATCATGCCAGGAAACATTCTGCTATGAAAGAGCAGAGTTACTGGGTGATGCATACCTGAAATGGGTTGTGAGTAGATTCCTTTTCCTAAAATATCCTCAGAAGCATGAGGGACAGCTTACAAGGATGCGACAGCAGATGGTCAGTAACATGGTCCTCTACCAATTTGCCCTGAATAAAACTCTTCAATCGTATATTCAAGCAGATCGGTTTGCCCCATCAAGATGGGCAGCTCCAGGAGTACTACCTGTATTTGATGAGGAGACGAGAGAATCTGAACCGTCCATCTTTGGTGAGGGGTCAATACCTGGTAATGAAGTACAGAAGGATTATGATGATGACTACACACATAGCATTCAAGAGGAGGGTGAAATTGACGGAGATTCTAGCTGCTATCGTGTTCTCTCAAGCAAGACTCTAGCAGATGTCGTTGAAGCACTTATTGGGGTCTATTATGTAGCAGGAGGGAAAATTGCTGCAAACCACCTGATGAGGTGGATTGGGATTCATGCTGAGTTGGATCCTCAAGAGATCCCTCCTCCGAAGCCATATAATATACCTGAGAGCATATTGAAAGGCATTGACTTTGAGACATTGGAAGGCGTCTTGGGTATGAAATTCCAGAATAAAGGTTTTCTTATTGAGGCTATAACGCATGCATCCAGGCCATCTTCTGGTGTTTCCTGTTACCAGCGGCTGGAATTTGTTGGTGATGCTGTGTTGGATCATCTCATCACAAAGCATCTATTTTTTACATATACTGATCTACCTCCAGGTCGCTTGACTGACCTGAGAGCTGCAGCTGTTAATAATGAAAACTTTGCAAGGGTTGCAGTTAGACGTAAGCTGCACGGACATCTTCGCCATGGATCATCTGCACTGGAGAAACAGATTCGGGAGTTCGTGAAGGATGTCCGAGAAGAGATTTCAAAATCAGGTTTCAATTCTTTTGGACTAGGGGACTGCAAGGCTCCTAAAGTTCTTGGAGACATTATTGAGTCTATTGCTGGGGCAGTATTCCTGGATAGTGGGTATGACACCTCGGCAGTCTGGAAGGTGTTCCAACCGCTCCTTGAACCTCTGGTAACGCCAGAGACCCTTCCGATGCATCCAATTAGGGAGCTCCAAGAACGGTGCCAGCAACAAGCAGAAGGCTTAGAATACAAAGCATCCCGGGCAGGCAATGTAGCTACTGTTGAAGTCTTTGTTGATGGTGTTCAGATTGGTGTAGCTCAGAATCCCCAGAAGAAAATGGCACAGAAGTTGGCGGCGAGGAATGCACTTGTGGTCCTGAAGGACAAGGAAACCGCAGCAAAGAAAGAGACCGAAAAGGACGGTGATAAGAACAATGCTGGGTTCACCAGGCAGACCCTGAACGACACTTGCTTGAGAAGGCAGTGGCCAATGCCACAGTACAGGTGCATAAACGAGGGCGGCCCTGCTCATGCTAAAAGATTTGTGTATGCGGTCAGAGTGAATACGTCCGATTGTGGATGGACCGATGAGTGTGTCGGAGAGCCGATGCCGAGCGTGAAGAAGGCCAAGGACTCTGCCGCCATGCTTCTCCTCGAGCTTCTGAATCGAAGTTTCCCGGATAAGCCTGACGGCAAGAAGTGA
Protein Sequence
- >TraesROB_scaffold_121217_01G000400
MPLSGRRKYHCSSVSHSLEPPLSARERRAREGQAGKASTHLLYRAQTGGINRAAAAGEMAGGGGGEQPGAVSYWYDACEDEDDPSLLFDFAASADFGPAMDSGGIDFAPGLMPLPAMDCGIDFASADFDPGLLPAMDCGVEDGLVDEIDRILESINDESAPAPAPQPPPSQPVPPPPPAERVQEAAAAAVVDNAVAVVGSGQRSEAVEPRRETRIVEPRKETRSVDPRRETRRESHGGSTNGGRSGEWRDGKRPRLAPGAHGEPRPDSRRRPMLPPPSRAWEERRGRRDFVDRPRKRDRDSNPAHRREARGFWERDRGGKMVFRPGTWEQESEREGKRARTQSGGSVEKNAEADKAASAQKEKPLAEEQARHYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSICDKMMKENRKILAVFLVPKVPLVYQQAEVIRERTGYRVGHYCGEMGQDFWDARKWQREFDSKQVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPVVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPFEVVVQYDKAATLCSLHEQIKQMEAAVEEAALCSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTVLQNDERANYQVDVKFQESHLKKVVDLLHCQLTEGAAVKSETNDVEMHNTENHNPSELEDGELPDSHAVSVGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTDDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRTSQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYVQSRGRARKPGSDYILMVERGNLAHETFLRNARNSEETLRKEAIERTDLSHLDGTLLNSIDTSPDSMYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMQKHEKPGGSMEYSCKLQLPCNAPFEKLEGPICGSIRLAQQAVCLAACKKLHEMNAFTDMLLPDRGSGEGEKTEQNEGDPLPGTARHREFYPEGVAEILRGEWILCGRDGCQSTQFIKLYMYSVNCVDVGTSKDPSLAQLSNFSIIFGSELDAEVLSTPMDLFVARTMITKASLVFRGPIEVTESQLVLLKGFHVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVGAEKCTDALREIDWTLVNNIVNTDAWNNPLQKARPDVYLGTNERTLGGDKREYGFGKLRNGTAFGQKAHPTYGIRGAIADFDIVKASGLVPSRDRGYSSDYQNQGKLFMADSCWDAKDLSGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELVYKKQPLIRARGVSYCKNLLSPRFEHSEAREGDFSENVDKTYYVYLPPELCLVHPLPGSLIRGAQRLPSIMRRVESMLLAVQLKETIDYPVPAVKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALNKTLQSYIQADRFAPSRWAAPGVLPVFDEETRESEPSIFGEGSIPGNEVQKDYDDDYTHSIQEEGEIDGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMRWIGIHAELDPQEIPPPKPYNIPESILKGIDFETLEGVLGMKFQNKGFLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVRRKLHGHLRHGSSALEKQIREFVKDVREEISKSGFNSFGLGDCKAPKVLGDIIESIAGAVFLDSGYDTSAVWKVFQPLLEPLVTPETLPMHPIRELQERCQQQAEGLEYKASRAGNVATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKDKETAAKKETEKDGDKNNAGFTRQTLNDTCLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDCGWTDECVGEPMPSVKKAKDSAAMLLLELLNRSFPDKPDGKK