Information report for TraesLAC3A03G01423830
Gene Details
|
|
Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Triticum aestivum: TraesCS3A02G412700, Traes_3DL_C1684BF20.2, TraesCS3D02G407400
Gene Resources
- Pfam: PF02373 PF02375
- UniProt: A0A9R0RWE1
- EMBL: LT934115
- InterPro: IPR013087 , IPR036236 , IPR050329
- PANTHER: PTHR19818 , PTHR19818:SF139
- SUPFAM: SSF57667
- PROSITE: PS00028 , PS50157
- Gene3D: 3.30.160.60
Sequences
CDS Sequence
- >TraesLAC3A03G01423830
ATGGAACCACGCAGTTCTAGACTGAAGGAGAAGAAGAAGGGTGAAGGGGGACAATTGGTCAAGAAGTTATTTGTCCAAAATGCTATTCAAGATAATGAACTGCTTAGTTGTCTTCTGAATGATGGATCTTCTTGTATTATTCTTCCTATAAATGCTCATGATGGTCCTGTTCTTTCAGCTTTGCGTTCAAGATCCCAATTAATACCTAAATCCAAGTTGTCAAGATGTACACATGATTCACATAATGCAGAAGGTGACAAGGAGGATGTAATCAGTGCTGCTGGGCTCTTAGATCAGGGCTTATTATCCTGTGTCAGCTGTGGGATTTTAAGTTTCTCCTGTGTTGCTGTCATCAAACCAAGAGAGTGTGCATCAAAATACTTCATGTCTTCTGATTATAATTCGATCAATGATCAGCTTGTTGGTTCTGGTGGGAGTCATCTGGCTAATGCAGCTGGAAGTGAAGGGACCAATGGTGGCATTCTACGACCCAGTTTTGAACCATATGCCAATGATGCTGGACCTGTCACTAGAAATTCTGCTCCTGATCTTCTGGCATCTGCTTATGGAAATCAACCGGACACTGATGAAGATAATCGGAACAAAAAAATTAAGGTCTCTCATGACTCCAGCGAATTAGACGGAACGAAGATTCTCTCAAGTAGCATTAAATGCCAACAAAGACCATCATCCCAGAGCTCTCAGTGTATTGGTGGCTCAGGTATTTCGAATGGACCAAGAGGTGTTCGCACAAGAAACAAATATCAACTTAAGATGGCACTGTCTCAAGGTTTTCAGCTAAAGAATAATTATTGGACAATGGAACAGAAGGTTCAACCTGAACCGTCAAGGTCAAAAGAGACTGTGAAGGAGCCACTTGATGCCAGCGGTGCAGATAATGATGCTAGATGTAACAGCGCTGCAATCTCTGTGGGTGACCCTAGGATCTCTACAACCACGATGGACAACTTAAATAAACCAATTGTGAAAATTGATAAGGATTCATCGAGAATGCATGTATTTTGTCTTGAGCATGCTGTCGAGGTTGAGAAGCAACTCCAAGCAATTGGTGGGGCCCATGTTATTCTTTTATGTCGTCCAGAATATCTTAAAATAGAAGCAGAAGCAAGGTCGTTAGCTGCAGAAATGGAAGTTGAGCATGGCTGGAAGGACATCCATTTCAGGGAAGCCAACATGGAGGACAGGAAGATGATAGAAGAGCTCCTGCAGGATGAGGAATCAATACCAACAAGCAGTGATTGGGCTGTAAAGCTGGGAACCAATCTTTACTACAGTGCAAATCTGGCCAAATCTCCTTTACATAACAAACAAATACCATACAACAGGGTCATCTATAGGGCATTTGGCTGCAGTTCTCCTGACAACTCACCAGTAAAACGGGAAAATTGCGAGGGGAGTCAAGACAGGCAGAAGAAAGTAGTCTTGGCTGGCCGGTGGTGTGGGAAAGCATGGATGTCAAACCAGGTCCATCCATTCCTAGCTCAGAGAATTGAAAGCAGTGAAGCGAAGGAGGCTGACAAGTCTAGTGGAGTGCAAGCCTCGAAAAGAAATAGTGGCACCATAACAGATGTACCAAAATCAAGCAAGAAAAGGGGGAACATGGCTGTGGAGGTAACAATAGACACCAAGAGGCCCAGACTAGCTGAGGGGCACAGCTCGAAACCATTAAAAGGTATTGCTGATGTGTCCCACCCCTCGCCAGCTGCAGTGGTTCCTCGTGTCAGCTCTAGGATTGCCGATAGAGCAAACAGGCTAAAATCAGATATGACAGAGGAGGATGATGGTCATGCTTGCCGTCCAAAGCCAAAGGCTACCTCCCATTCGCGAACAAGGCCACCAAAGAAGATTGAGGTTGAAGCAAAGAAGCAAATGAACATGAGTAAAGGAGACAGCAAGATGATGGCTCCAACTGCTGCAAAGGATGATGAGGAGCACCCATCTGCCACCAAGGGGGGTCCTTCTGTGGGCCCTGCCACTAAGCTGGAGTTTTCTCAGCGTAAGCACAGAACCAGAACCAAAACGATGAAGCTACTGAAGAAAGCCACAGGAGAGGAGAGGACTCCAAGAGATCATCCAATGCACGTCGAAGGGTACACATGCAGCATCGAGGGCTGTTCGATGAGCTTCGACACGAGAAATGAACTGTCCCTGCATGAGCTCGACATCTGCCCGGTCAAGGGCTGTGGAAAGAAGTTCTTCACGCACAAGTTTCTGCTGCAGCACCACAAGGTTCACACCGAAACGACGAAGCAACTGAAGAAAGCTACAGGAGAGGAGAGGGCTCCAACTCCAAGAGATCATCCGATGCGCGTGGAAGGGTACACTTGCACTATCGACGGCTGCTCAATGAGCTTCGACACGAAAAAGGAACTGTCCCTGCACGAGCGTGACATCTGCCCGGTCGAGGGCTGTGGGAAGAAGTTCTTCACGCACAAGTATCTGCTGCAGCACCGCAAGGTTCACACCGACGACCGGCCGCTCAAGTGCCCGTGGGAGGGCTGCGACGTGGCCTTCAAGTGGGCATGGGCCAGGACGGAGCACCTCAGGGTTCATACCGGCGACAGGCCCTACGTTTGCTGCGAGCCAGGGTGTGCAGAGACGTTCAGGTTTGTATCAGATTCCAGCCGTCACAAGCGCGAGACAGGCCACTCAACCAAGCAGACTAAAACCAAGACATGA
Protein Sequence
- >TraesLAC3A03G01423830
MEPRSSRLKEKKKGEGGQLVKKLFVQNAIQDNELLSCLLNDGSSCIILPINAHDGPVLSALRSRSQLIPKSKLSRCTHDSHNAEGDKEDVISAAGLLDQGLLSCVSCGILSFSCVAVIKPRECASKYFMSSDYNSINDQLVGSGGSHLANAAGSEGTNGGILRPSFEPYANDAGPVTRNSAPDLLASAYGNQPDTDEDNRNKKIKVSHDSSELDGTKILSSSIKCQQRPSSQSSQCIGGSGISNGPRGVRTRNKYQLKMALSQGFQLKNNYWTMEQKVQPEPSRSKETVKEPLDASGADNDARCNSAAISVGDPRISTTTMDNLNKPIVKIDKDSSRMHVFCLEHAVEVEKQLQAIGGAHVILLCRPEYLKIEAEARSLAAEMEVEHGWKDIHFREANMEDRKMIEELLQDEESIPTSSDWAVKLGTNLYYSANLAKSPLHNKQIPYNRVIYRAFGCSSPDNSPVKRENCEGSQDRQKKVVLAGRWCGKAWMSNQVHPFLAQRIESSEAKEADKSSGVQASKRNSGTITDVPKSSKKRGNMAVEVTIDTKRPRLAEGHSSKPLKGIADVSHPSPAAVVPRVSSRIADRANRLKSDMTEEDDGHACRPKPKATSHSRTRPPKKIEVEAKKQMNMSKGDSKMMAPTAAKDDEEHPSATKGGPSVGPATKLEFSQRKHRTRTKTMKLLKKATGEERTPRDHPMHVEGYTCSIEGCSMSFDTRNELSLHELDICPVKGCGKKFFTHKFLLQHHKVHTETTKQLKKATGEERAPTPRDHPMRVEGYTCTIDGCSMSFDTKKELSLHERDICPVEGCGKKFFTHKYLLQHRKVHTDDRPLKCPWEGCDVAFKWAWARTEHLRVHTGDRPYVCCEPGCAETFRFVSDSSRHKRETGHSTKQTKTKT