Information report for TraesCS6B02G348300
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Arabidopsis thaliana — AT1G62830
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A9R1LCX7
- EMBL: CM022227
- OMA: NIMSENT
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: A0A9R1LCX7
- STRING: 4565.A0A3B6PQW5
Sequences
CDS Sequence
- >TraesCS6B02G348300
ATGGAGGACGGCAACGGGGCGCAGCCGCCGCCCTTGCCTCCGCCCGACGCGCCCGAAGCCGCGGGGCATCTGGCTCTCGTCCCCATGGACCAGGACGAGGACCAGGCCGCCGCCGCGGAGCCCATGGAGGACGGCGCGGCCGGGGGAGACGCCGCGGAGCCCATGGAGGAGGACGCGCCCACGTCCTCCCCGACCCCGTCCGCCCCCTCCACCACCGCGGCCGTCGACGACTCCACCGTCGCGCGGAAGCGCCGCCGCCGCAAGAAGCAGTTCCCCGGCATGATCCCCACGGCCGGCGTCCGCGTCCTCCGCGCCTCCTCCTCGTCGGGGGCCACCGCGGCGCATCTCGCTGGCATCCCGCGCCGCCGCGGCCGCCCGCCGACCAACTCCTCCCTCCGCCTGGCGCGGGAGCTGGATTCCGAGGCCACCATCGCGCTCGCGGCGGGATTCCCCGCGGATACCCTCTCCGAGGACGAGGTCGCCGCCGCCGTCATCCCACTTATTGGTGGCGCCGACCAGGCCAACTACCTCGTCGTACGCAACCATATTCTCGCGCTCTGGCGCTCTAATCCCCTCTCCCCCGTCGCGTCCAACGCCGCGCTCGCATCCATCCGCGCCGAGCACGCGCCCCTCGTCGCCGCTGCACACTCCTTCCTATCGGACCATGCCTACATCAATTTCGGCCTCGCCCCCTCCATTGTCTCCCTACCACCAATCCCCCCTCCCTCCCATCCTCCCCCTTCTGTCCTCATCGTGGGTGCTGGCTTTGCTGGCCTCGCCGCTGCACGCCACCTTATGTCTCTTGGCTTCAAGGTTGCCATTGTCGAAGGCCGACTCCGCCCAGGTGGCCGTGTGTTTACTAAGACAATGCGGTCCTCTGCAGCAGACTATCCTGACATTGCTGCTTCTGCTGATCTGGGAGGCAGTGTGCTCACTGGTATCAATGGGAACCCCCTTGGTGTCATAGCACGGCAGCTTGGGTTCCCACTTCACAAGGTGCGGGACAAGTGCCCGCTGTATCTTCCGGATGGCCGCCCAGTCGACCCTGGCATGGATGATCGTGTTGAGGCTGCCTTTAACCAGCTTCTTGACAAGGTTTGCCAGCTGCGGCAGGTTATCGCAGATAGTGTTCCACACGGTGTGGATGTGTCACTTGGCATGGCACTCGAGGCATTCCGGGCAGCGCATGGTGTTGCCGCTGAGCCAGAGGAACGGATGCTTCTTGATTGGCATCTGGCCAACCTGGAGTATGCCAATGCCGCTCCTCTTGCTGATCTCTCCATGGCCTTCTGGGACCAGGATGATCCATATGAAATGGGTGGCGACCACTGCTTTATACCTGGTGGCAATTCCCAATTTGTCCGAGCACTTGCTGACGGCGTCCCGATATTCTATGGACAGAATGTGCGAAGGATACAGTATGGGTGTGATGGTGTGTTGGTCTACACTGATAAGCAAACATTCCGTGGTGATATGGCGCTCTGCACTGTCCCCCTTGGTGTGCTTAAGAAGGGGGACATCGATTTTGTGCCGGAGCTGCCAGTTCAGAAACGAGAGGCCATTCAGAGATTGGGTTTTGGGCTTCTTAATAAGGTTGTGATGTTATTCCCTTTTGACTTCTGGGATGGTAGGATTGATACGTTTGGGCATTTGACTGAGGACTCTAGTCAACGAGGTGAATTCTTCCTGTTCTATAGCTATTCTTCAGTCTCGGGAGGTCCACTGCTCGTTGCCCTTGTTGCTGGGGAATCTGCTATCAGTTTTGAGAAGAAGTCACCAATGGAAAATGTCGAGAGGGTGTTAGACACACTTAAAAAAATCTTTTCACCCATGGGGATCGAGGTACCAAACCCACTGCAGGCAATATGTACTCGATGGGGCACTGACAAGTTTTCATATGGATCATATTCCCATGTGGCTGTTGGGTCTTCCGGTGATGATTATGATATTTTGGCTGAGAGTGTTGGTGATAGAATCTTCTTCGCCGGGGAGGCAACAAATAGGCGGTACCCTGCAACGATGCATGGAGCTCTGCTTAGTGGGTACAGAGAGGCTGCCAATATTGTAAGAGCCGCTAGAAAGAGAGCAAAAAAGGTTGACTTATCTGAGAAAATAGTTGTCAGTTATGAAGTCAAAGATATTGTTAAAGATGACAACATTGATTTGGATGATCTCTTCCGTACCCCTGATGTTGCTTTCGGTGGCTTCTCAGTTCTGCATGACCCATCTGTATCTGAACCTGATTCAGCATCATTGCTGCGTGTTGGAATTGGTGCCAGAAAGTTAGGCTCTGGTTCACTTTTCCTGTACGGCCTAATAATGCGGAAGAATGTAACTGAGCTAGCTGCAATGGAAGGCGACGAGCAGCGGTTGAGTACACTGTACCGAGATTTTGGGACAAAACTTGTGGGATTGGATGGCTTGGGTGATGCTGGGGAAAGCCTTATATCACGGATAAAGGCTTCTTCTAAGAAGTAG
Protein Sequence
- >TraesCS6B02G348300
MEDGNGAQPPPLPPPDAPEAAGHLALVPMDQDEDQAAAAEPMEDGAAGGDAAEPMEEDAPTSSPTPSAPSTTAAVDDSTVARKRRRRKKQFPGMIPTAGVRVLRASSSSGATAAHLAGIPRRRGRPPTNSSLRLARELDSEATIALAAGFPADTLSEDEVAAAVIPLIGGADQANYLVVRNHILALWRSNPLSPVASNAALASIRAEHAPLVAAAHSFLSDHAYINFGLAPSIVSLPPIPPPSHPPPSVLIVGAGFAGLAAARHLMSLGFKVAIVEGRLRPGGRVFTKTMRSSAADYPDIAASADLGGSVLTGINGNPLGVIARQLGFPLHKVRDKCPLYLPDGRPVDPGMDDRVEAAFNQLLDKVCQLRQVIADSVPHGVDVSLGMALEAFRAAHGVAAEPEERMLLDWHLANLEYANAAPLADLSMAFWDQDDPYEMGGDHCFIPGGNSQFVRALADGVPIFYGQNVRRIQYGCDGVLVYTDKQTFRGDMALCTVPLGVLKKGDIDFVPELPVQKREAIQRLGFGLLNKVVMLFPFDFWDGRIDTFGHLTEDSSQRGEFFLFYSYSSVSGGPLLVALVAGESAISFEKKSPMENVERVLDTLKKIFSPMGIEVPNPLQAICTRWGTDKFSYGSYSHVAVGSSGDDYDILAESVGDRIFFAGEATNRRYPATMHGALLSGYREAANIVRAARKRAKKVDLSEKIVVSYEVKDIVKDDNIDLDDLFRTPDVAFGGFSVLHDPSVSEPDSASLLRVGIGARKLGSGSLFLYGLIMRKNVTELAAMEGDEQRLSTLYRDFGTKLVGLDGLGDAGESLISRIKASSKK