Information report for Tp57577_TGAC_v2_gene2775
Gene Details
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Functional Annotation
- Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.
- Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).
Homologous
- Glycine max: Glyma.04G187600, Glyma.06G178200
- Juglans regia: Jr09_06540
- Manihot esculenta: MANES_13G119400
- Medicago truncatula: Medtr6g065580, Medtr2g046020
- Nicotiana attenuata: A4A49_19701
- Populus trichocarpa: POPTR_T046100v3, POPTR_018G138000v3, POPTR_004G134000v3
- Prunus avium: Pav_sc0000113.1_g130.1.mk
- Prunus persica: PRUPE_7G183100
- Rosa chinensis: RchiOBHm_Chr2g0097141, RchiOBHm_Chr5g0051581
- Vitis vinifera: VIT_07s0130g00380, VIT_07s0130g00390
Sequences
CDS Sequence
- >Tp57577_TGAC_v2_gene27751
ATGTCTTGTTGTATTGCTCCTTTTCTATCTTCTTTTCTCAGATGTATTTCTGATTATGATGCTTATAAATATCTTATTCATTTTTTTCTGTTTCTTTCTCTTATTTTTCAACACCGAAGAGGGGAAGTTATGGCTGGTGGGAAACAAAAGAAGCGAAGTTTGTCAGAGAGTGGTGAGCAGCCTGCTCCTACTCGTAAAATGCCTAAACGGTCAGCGACTGGTGCAAGGAAATTTTTTAAGAAGTCTTTTTCCATATCCAATAAATCATGTCATATTAAAAGAAATCAGGACAAGATTGCAGGACAAGAGTTGAAATCTGTCTGTATGACTGCTGAACAAGACGATGGCCGTCCAAATAGAAGAATTACAAACTTTTTCCTTCATGATGAAACTGGTGCAATGCAGCCACTTGAGATGCTTGAAATCAACAATTTATTCATCACTGGACGTATATTGCCACTAGAAAGAAGTGCAGACAAGAATAAAGATAAAGGTTTTAGATGTAAAAGCTTTGGTCGAATTGAGTCGTGGAATATATCTGGCTATGAAGATGGCTCTCCAGTGATATGGATTTCTACCAATATTGCTGATTACGATTTGCAGAAACCAGATGCAAGTTACTTAAAATGTTACGACCATTTCTTTGAAAAGGCACGTGCTTCCTTAGAAGCATACAAAAAACTAGCGAAGTCTTCTGGTGGAGACCCTGAGATAAGTCTTGACGAGTTACTTGATGGCATGGCAAGGTCGATGAGTGGTAGCAAGTACTTTTCTGGAACTGCGTCTTTAAAGAAGTTCATTATTTCCCAGGGCGAGTTTATTTATAAGCAGCTTATTGGTTTAGACACGACGTTGAAGGAAGACGACAAGGAGTTTGCACACATTCCTGCTCTGATTGCTCTTAGAGATGAGAGCAAGAAACAAGCAAACTTTGCAAGCACGCACCTGATGCCATCAAATGTGACTTTAAGAATCAGTTCGGGAATTAGTCACAAAGAGAAAAAGAATCAGATGGATTCTGTAGATGAAAAAGATAAGGATGCAAAGTTAGCGCGACTATTGAAGGAACAAGAGAACTGGAATTCTTTGAAGCCGAGGAAAAACCCTGGATTATCCACTTCATCTAAGAAATTCTATATCAAAATTGACGAAGATGAGATCGCCAAGGACTACCCTGTCCATGCTTATTACAAAACTTCTCTTCAAGAAGCAGATGAGTTTATCGTTTTTGATAATGACTATGACGTGTATGAGTATGACATTGAAGATCTTCCTAGAAGCATGCTGCATAATTGGGCTTTATACAACTCTGATTATAGATTGATTTCACTAGAACTTCTTCCTATGAAACCTTGCTCAGAGATAGATGTTACAATTTTAGGATCGGGTCTAGTGACTGCAGATGATGGAAGTGGGTTCCATCTCGATACAGAGGAAGGCCAGTCTTCCAGTGCTTCTGGTGCACAGGCCACCGATGGAATTCCAATTTATCTGAGTGCTATAAAGGAATGGAGGATTGAATTTGGATCGTCTATGGTTTTCATATCCATCCGAACAGATATGGCCTGGTATAGACTTGGAAAACCGTCAAAGCAGTACAGTCCTTGGTATGACACCGTATTGAAAACTGTAAGGATTGCTATAAGCATTATCACATTGTTAAAGGAGCAGGGCCATGTATCGAGACTTTCCTTTGAAGATGTCATACAGAAAGTATCTGAGTATAAGCAAGACCATAAGTCGTACATTTCTTCTGATCCAGTGGCTGTTGAGAGATACGTTGTTGTCCACGGACAGATAATTCTGCAACTGTTTGCAGAATTTCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAACACAAAATCCGCGCTCATTTTCCAAAGAAACTAAAGCATTTTCTGATGACGGAAAAATTAGATGGGAAGGGGGTCCTGAAGGGAAGACCAGTTCCGGATGCCTTCTTTATAACCAGGCAATTATTCACGGCGAAGTTGTTTCTATTGGAATATCTGTGTCGGTTGAAGTTGATGAATCCGATGAACTTCCTGATCTATATTACATTGAATATATGTTTGAATCAAAAAATGGGATAAAAATGTTTCATGGTAGGATGATGCAGCATGGTTGTCAGACTGTTCTTGGTAACACCGCCAATGAGAGAGAGGTGTTTTTGACTAATGAGTGCAGGGATTTGGGACTTCAGGATGTTAAGCAGATAAATGTTGTAAGTATCCGAAAAACGCCTTGGGGGCATCAGTATCGAAAGGATAATATCATTTCGGATAAGCTTGATAGGGAGAGAGCAGAAGAAAGGAAAAAGAAAGGACTACCTACTGAATATTACTGTAAAAGCTTGTACTGGCCGGAAAGAGGTGCTTTCTTCAGCATTCCATTTGATAAGCTGGGTCTAGGGTCTGGCTTCTGTCACTCTTGCAAGTTAGAGGAAGACGAAAAGGAGAAACAGATTTTCAAAGTAAACCCATCCAAGTCTAGTTTTGTATTGGAGGGAACTGAATATTCTCTCAACGACTATGTTTATGTCAGTCCTTTTGAATTTGAGCAAAGGATAAAGAAGGGTCGTAAGAGTAGGAGGAATGTAGGGTTTAAAGCTTATGTTGTATGCCAAGTGCTCGAGATCATTGCCAAAAACGAAAGAAAACAAGCGGAAATAAAATCTACAGAGCTCAAAGTCAGAAGGTTCTTCCGACCAGAAGATGTATCAAGTGAGAAGGCATACTGCTCCGATGTACAAGAGGTGTATTACAGTGACAAAACATATACTATCTCTGTACGATCCGTAAAAGGTAGATGTGAAGTCAGGAAAAAGGTTGACGTCCATGAAGCAAGTGCCCCTGGAATCTTCCATAACGTCTTTTTCTGCGAGCACTTGTATGATCCTGCCAATGGATCCCTCAAGAAGTTGCCAGCTCATATCAAAGTAATATATTCTAGTGGACATACAGCTGATGCTGCAGCTAGAAAGAAAAAGGGAAAATGTAAGAAAGGAGATAGCATTTCAGAGCCTGAACTAGTAAAAAGAACATCAAATGAAAAATGTTTAGCAACGTTGGACATTTTCGCAGGTTGTGGTGGCTTATCAGAGGGGTTTCGCCAGTCAGGTGTTTCATCAACTAAATGGGCTATTGAATATGAAGAACCAGCTGCGAATGCGTTTAAAGCTAATCATCCTGAAGCATTGGTGTTTATTAACAATTGCAATGTTATTCTTAGGGCTATAATGGAGAGTTGTGGTGATATAGATGATTGCATTTCAACAACTGAGGCTGCAGAGTTGGCGTCCAAACTTGATGAGCATGAGTTGAGTAGTTTACCCTTGCCTGGCCAAGTTGATTTCATTAATGGGGGTCCTCCATGCCAGGGTTTCTCAGCTATGAATAGGTATGCTACAAGCGCTTGGAGTAAAGTCCAGCGCGAGATGATATTAGCGTTCCTATCCTTCGCTGATTATTTCCGGCCAAGGTATTTCCTAATGGAAAATGTAAGGAACTTCGTTTCATTTAATAAAGGAAAGACGTTCCGTTTAACTTTGGCTTCACTTCTTGAGATGGGTTATCAGGTGAGGTTTGGTATCCTTGAGGCTGGAGCTTTTGGAGTTTCACAGTCAAGGAAAAGGGCATTCATATGGGCAGCCGCTCCAGAAGATGTGCTTCCTGAGTGGCCAGAACCAATGCATGTATTTTCAACCCCCGAGTTGAAAATAAAATTGTCTGAAAATGTCCAGTATGCTGCCGTCCGCAGTACTGCAAATGGTGCCCCATTACGTGCCATAACTGTTCGAGATACCATTGGTGAACTCCCGGCTGTAGGCAATGGAGCCTCTAGGACAAACATGGAGTATCAAAGCGAACCCATATCATGGTTTCAATTGAAGATCCGAGGAAATATGGCTGTGTTGACTGACCATATATCTAAGGAGATGAATCAATTGAATTTGATTCGGTGCAAAAATATTCCGAAGAGGCCTGGTAGTGATTGGCGTGATCTTCCGGATGAAAAGATAAAACTGTCAAATGGACAACTGGTTGATTTGATACCATGGTGTTTGCCAAACACAGCTAAGAGGAATAACCAATGGAAGGGAGCCTTCGGCAGGTTGGATTGGCAAGGGAATTTCCCAACTTCCATTACTGACCCTCAACCCATGAGGAAGGTTGGAATGTGCTTCCATCCTGACCAAGATCGAATTCTCACTGTTCGTGAATTCGCCCGGTCTCAAGGCTTCCCGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATCTTCAATGGATTTAAGGGCAATTTTGAAATTTCTCCTATCACACTGTAA
Protein Sequence
- >Tp57577_TGAC_v2_gene27751
MSCCIAPFLSSFLRCISDYDAYKYLIHFFLFLSLIFQHRRGEVMAGGKQKKRSLSESGEQPAPTRKMPKRSATGARKFFKKSFSISNKSCHIKRNQDKIAGQELKSVCMTAEQDDGRPNRRITNFFLHDETGAMQPLEMLEINNLFITGRILPLERSADKNKDKGFRCKSFGRIESWNISGYEDGSPVIWISTNIADYDLQKPDASYLKCYDHFFEKARASLEAYKKLAKSSGGDPEISLDELLDGMARSMSGSKYFSGTASLKKFIISQGEFIYKQLIGLDTTLKEDDKEFAHIPALIALRDESKKQANFASTHLMPSNVTLRISSGISHKEKKNQMDSVDEKDKDAKLARLLKEQENWNSLKPRKNPGLSTSSKKFYIKIDEDEIAKDYPVHAYYKTSLQEADEFIVFDNDYDVYEYDIEDLPRSMLHNWALYNSDYRLISLELLPMKPCSEIDVTILGSGLVTADDGSGFHLDTEEGQSSSASGAQATDGIPIYLSAIKEWRIEFGSSMVFISIRTDMAWYRLGKPSKQYSPWYDTVLKTVRIAISIITLLKEQGHVSRLSFEDVIQKVSEYKQDHKSYISSDPVAVERYVVVHGQIILQLFAEFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTQNPRSFSKETKAFSDDGKIRWEGGPEGKTSSGCLLYNQAIIHGEVVSIGISVSVEVDESDELPDLYYIEYMFESKNGIKMFHGRMMQHGCQTVLGNTANEREVFLTNECRDLGLQDVKQINVVSIRKTPWGHQYRKDNIISDKLDRERAEERKKKGLPTEYYCKSLYWPERGAFFSIPFDKLGLGSGFCHSCKLEEDEKEKQIFKVNPSKSSFVLEGTEYSLNDYVYVSPFEFEQRIKKGRKSRRNVGFKAYVVCQVLEIIAKNERKQAEIKSTELKVRRFFRPEDVSSEKAYCSDVQEVYYSDKTYTISVRSVKGRCEVRKKVDVHEASAPGIFHNVFFCEHLYDPANGSLKKLPAHIKVIYSSGHTADAAARKKKGKCKKGDSISEPELVKRTSNEKCLATLDIFAGCGGLSEGFRQSGVSSTKWAIEYEEPAANAFKANHPEALVFINNCNVILRAIMESCGDIDDCISTTEAAELASKLDEHELSSLPLPGQVDFINGGPPCQGFSAMNRYATSAWSKVQREMILAFLSFADYFRPRYFLMENVRNFVSFNKGKTFRLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAAAPEDVLPEWPEPMHVFSTPELKIKLSENVQYAAVRSTANGAPLRAITVRDTIGELPAVGNGASRTNMEYQSEPISWFQLKIRGNMAVLTDHISKEMNQLNLIRCKNIPKRPGSDWRDLPDEKIKLSNGQLVDLIPWCLPNTAKRNNQWKGAFGRLDWQGNFPTSITDPQPMRKVGMCFHPDQDRILTVREFARSQGFPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCIFNGFKGNFEISPITL