Information report for Tc03v2_g009930
Gene Details
|
|
Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Gossypium arboreum: Cotton_A_09671_BGI-A2_v1.0, Cotton_A_18629_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D07G0545, Gohir.D07G058400, Gohir.A09G244800, Gh_A09G2168, Gh_D09G2376, Gohir.D09G245700, Gohir.A07G054000
- Populus trichocarpa: Potri.015G089000.1, POPTR_015G089000v3, Potri.012G092400.1, POPTR_012G092400v3
Sequences
CDS Sequence
- >Tc03v2_g009930
ATGGCTGCTTCAAGCCTTTCACCAGAGCCAAGTCAAGAAGTGTTTTCCTGGCTGAAATCTCTGCCTTTAGCTCCAGAGTACCGGCCTACTTTGGCAGAGTTTCAAGATCCAATTGCCTACATTTTCAAGATCGAAAAAGAGGCTTCCCAGTATGGAATCTGCAAAATCATACCTCCAGTGCCTCCTGCTCCTAAAAAGACAGCAATTGGGAACCTCAATCGCTCCCTTTTGGCTCGTGCCGCAGCTAATACTAGCTCCGATTCGAAGCCGGCACCCACATTCACTACCCGCCAACAGCAGATCGGGTTTTGCCCCAGAAAACCACGGCCCGTTCAGAAACCCGTCTGGCAGAGTGGGGAGTACTACACTTTCCAAGAATTCGAAGCAAAAGCGAAGAATTTCGAAAGGGGTTACTTGAAAAGATACAGCAGAAAGGGTTCCCTTTCAGCTTTGGAAGTCGAAACCCTTTTTTGGAAAGCGACGGTTGACAAACCCTTTTCCGTTGAGTACGCTAACGACATGCCTGGTTCAGCTTTTGTGCCTCTGAGCTCAAAGAAGAGCAGTGGTGGAGGGAGAGAAGCAGGGGAAGGAGTTACGGTTGGGGAGACACCGTGGAATATGAGGGCAGTCTCGAGGGCAAAAGGGTCATTGTTAAGGTTCATGAAGGACGAGATTCCGGGTGTTACTTCCCCTATGGTGTACATTGCAATGTTGTTCAGTTGGTTCGCTTGGCATGTAGAGGATCACGACTTGCATAGCTTGAATTATTTGCATATGGGAGCAGGGAAGACATGGTACGGTGTTCCAAGGGATGCCGCGGTTGCTTTCGAGGAGGTGGTCAGGCTTGATGGCTATGGAGGAGAGTTCAATCCTCTTGTTACCTTTTCCACTCTTGGTGAGAAGACCACAGTGATGTCTCCTGAAGTATTTGTTCATGCTGGGATTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAGTTTGTTGTCACTTTTCCAAGAGCCTATCATTCAGGGTTCAGTCATGGATTTAATTTTGGAGAGGCAGCTAATATTGCAACACCAGAATGGTTGAGAGTGGCCAGAGATGCTGCTATTCGAAGAGCTTCAATTAATTACCCTCCGATGGTCTCTCATTTCCAGTTACTCTATGATCTTGCACTTGAGTTATGTTCAAGGGTACCTATGAGCATCAATGCTAAACCAAAGAGTTCTCGACTAAAGGATAAGAAAAAAAGTGAAGGAGAAACCTTGGTTAAAGAATTATTTGTGCAGAACCTTATGCAGAACAATGAACTACTTCATATTCTTGGAAAAGGATCTTCAGTGGTACTACTCCCCAAAAGTTCTTCTGATATTTCTCCTTGTTCAGATTTACGTGTTGCATCCCAATTAAGAATAAACCCTAGGATGTCACGTGGCTTATGCAACTACAAAGATGTTGTGAAATTATCCAAAGACTTAGCTTCTGATGAGATCATGGTAGGTGGGAATGAAGAAATCAAGGGAGTAAAAGGTTTCTATTCAGTGAAAGGAAAATTTGCTTCAATGTATGAGGGTAACCGGGATTCTGCTTTTAATGGAACTGATCATTTGTGTAGACTGCCGTTGCAGACCTTGAACATGAGCGCAGAAGGAGAAAATGCTGTTCAAGGTGATGCATTGTCAGATCAGGGACTGTTTTCATGCGTCACATGTGGAATATTGTGCTTTTCTTGCATTGCTGTTCTTCAACCAACTGAACAAGCGGCTAGATACCTCATGTCAGCTGATTGTAGCTTTTTTAATGATTGGACTGTTGGTTCTGGAGTAACTCGTGATGGGTTCACCACTACTCATGGGGATGTAATTACTTCTGAGCAAAATTCCTGTACAAGGTGGATGAACAAAAGAGCTCCAAATGCTTTATATGATGTCCCTGTTCAGTCTGTTGAGGACAAGTTTCATATGGCAGATCAAAGTAACCAAGTGGTGGAAGATACTGAAAAAGGGGGAGATACTTCTGCTCTTGGTCTATTAGCTTCCACATATGGAAATTCATCTGATTCTGAAGAAGATCATGTTGAACCAAATGTTACTGTCTCTGGTGATGAGACAAATTCAGCAAACCGTTCATTAGAAAGGAAATTTCAGTATAATGGTTCTGGTTTCTCTCCTGGTGATGCAAATGGGAGTAATAATCCCTCATTATTAAGGCTTGAATCTGAGGAAGAAGCTCCTGTGCATGTTGACATCAAGTCTACGAGCCCTCAAGCATTTGACCACACTGTTGAGTTTGAAACTGATAATCTTGCTTCAAGAAGATCAATCGGTTTGGAGGATAAATTTAGAGATCCAATCACAACATCACATGCTAATCCAAGTTACTCCCCGGCCACTCATGGCGCAGAGAAAATGAGGTTTAGCAAGACCATGGTACCAATGGAGAATGCGGATATTCCATTTGCTCCGAGGTCTGATGAAGATTCTTCTCGAATGCATGTCTTCTGTCTTGAGCATGCTGTAGAAGTAGACCAGCAACTTCGTCAAATAGGAGGAGTGCATGTATTTCTCCTTTGTCATCCAGAGTATCCCAAGATAGAAGCAGAAGCAAAGTTGGTGACCGAAGAACTAGGAATTGATTATCCCTGGAATGACATTTTATTTGGGGATGCTACTAAGGAGGATGAGGAGAGGATCCAGTCAGCTCTTGATAGTGAGGATGCTATACCTGGGAACGGAGACTGGGCTGTAAAGTTGGGTGTCAACCTATTTTATAGTGCCAATCTCAGCCGCTCTACCCTGTACAGTAAACAGATGCCATACAATTATGTTATATACAGTGCATTTGGCCGTAACTCTCCTGGTAGCTCACCCACAAAATTGAATGTGTATGGGAGGAGGTCTGGCAAGCAGAAAAAAGTGGTGGCAGGAAAATGGTGTGGTAAAGTTTGGATGTCAAATCAGGTTCATCCATTTTTGGCACAAAGGGATCCTGAGGAACAAGAACAAGAAAGAGGCTTTCATGCTTGGGCAACTTCAGATGAAAATCTTGAGAGAAAACCAGAAAATGTTCACAAAGCTGAAACAACCAAGGTGGCTAAAAAGTTTAATAGAAAGAGAAAAATGAGGCCTGAGATTGCATCAAGCAAGAAAGTGAAATGCATTGAGACAGAGGGTGCAGTTTCAGATGATTCATTGGATGGTGGTTCTCTTAGGCAGCAACAGATTTTTTTTAGAGGCAAGCAGCCTAGACTGATTCAGAAAGAAGAGGCAATTTCATATGATTTGCTTGAGGATGATTCTCTTCTGCAGCAAAGGAATCTCTCCAGGAAAAAATTGGCAAAATTTATTGAAAGAGAAGGTGCTGAATCAGAAGATGCAGAAGAGGAATTTACTCATCAGCAGCATTGGAGGAATCTCAGAGGCAAGCAAGGCAAATATATTGAAGAAGATGATGCAGTTTCGGGTGATTCACTTGATGAAAGTTCTCTTAAGCAGTATAGGAGGATTCCTCGAAGTTGGCAGGCCAAATTTAGGGAGAGAGAAGATATTGTATCAGAGGATGAACTAGAGGAAATTTCTCATCGGCTGCATAGGAGGATTCCTAGATGCAGGCAAATCAAGTCATGTGAGAAGAATGATGCTATATCAGATGATTCACGAGCAGATAATTCTCTTAAGCAGTATAGAAGAATGCCTAAAGGCAGGCAAGCAAACTTTGTTGAGAGAGATGATACAATGTCAGATGATGCATCAGAAGATGATTCTCAACATCAGCTTAGGAGGATTCCTAAAGGCAAGCAAATGAAGTGCATGGAAAGAGATGATGCATTTTCAGATGATTCACTTGAGGATAATCTTCAACAGCAGCATAGGATTCCTAGAAGCAAAGTGGCCAAGTTTACTGATAGAGAAGATGTAGTTTCCTTTGATTCATTGAAGGGTAGTTCTCATCAACAGCGTAGGAGGGTTTCTAGAAGCCAGCTAACCAAGTTTATTGAGAGGGAAGATGCGGTTTCGTCTGATTCTCCAGATGATAGTTCTCTTCAGCAGCTTAGGAGGATTCCGAGAAGTAAGCAAACCAAGATTCTTGAGAGGGAAGATGCAGTTTCAGATGATTCACTGGATGATACTTCTCAGCAGCGGCTTAGAAAGACTCCTAGAAGCAGACAAGGGAAATTTATTGAGAGGGAAGATGCAGTTTCATATGATTCGTTGGATGAGAATTATCACCAACCAAATAGGAGGACTCTTAGAAGCAGAAAGAAGAAAGCCCAGACACCGCGGCAAATAAAACAAGAAACCCCTCGGAATGTTAAACAAGGGAAACGTCGGACAACAAAACAAGTAGTCTCTCAGCAAATAAAACAAGAGACTCCTCGGAATCGGAACACCAAAATTGAGCAAAGTGCTAGACAGTGCAATTCATATGGTGAAGATGAGCTAGAAGGTGGACCCAGCACACGCCTTAGGAAAAGAGTCCGAAAGCCTCTGAAAGAGTCAGAAACAAAACCAAAAGAGAAGAAGCAGGCCAGTAAGAAGAAAGTGAAGAATGCTTCAAATGTGAAAACTCTAGCTGGTCACAATACTTCAAAAGTAAGGGATGAGGAAGCAGAATACCAGTGTGACATGGAAGGATGCACCATGAGTTTTGGCTTGAAACAAGAGCTGCTCCTGCACAAAAGAAACATTTGTCCGGTCAAGGGGTGTGGGAAGAAGTTCTTCTCACACAAGTATCTGGTGCAGCATCGCCGAGTTCATTTGGATGACCGACCTCTTAAATGCCCTTGGAAGGGCTGCAAGATGACATTCAAGTGGGCATGGGCCCGAACAGAACACATTAGGGTTCACACAGGTGCTCGTCCTTACGTGTGTGCAGAAGAAGGCTGTGGGCAGACATTTCGTTTTGTGTCAGATTTCAGTCGTCACAAACGAAAGACTGGTCATTCAGCAAAGAAAGGTAGGGGATAA
Protein Sequence
- >Tc03v2_g009930
MAASSLSPEPSQEVFSWLKSLPLAPEYRPTLAEFQDPIAYIFKIEKEASQYGICKIIPPVPPAPKKTAIGNLNRSLLARAAANTSSDSKPAPTFTTRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKATVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCSRVPMSINAKPKSSRLKDKKKSEGETLVKELFVQNLMQNNELLHILGKGSSVVLLPKSSSDISPCSDLRVASQLRINPRMSRGLCNYKDVVKLSKDLASDEIMVGGNEEIKGVKGFYSVKGKFASMYEGNRDSAFNGTDHLCRLPLQTLNMSAEGENAVQGDALSDQGLFSCVTCGILCFSCIAVLQPTEQAARYLMSADCSFFNDWTVGSGVTRDGFTTTHGDVITSEQNSCTRWMNKRAPNALYDVPVQSVEDKFHMADQSNQVVEDTEKGGDTSALGLLASTYGNSSDSEEDHVEPNVTVSGDETNSANRSLERKFQYNGSGFSPGDANGSNNPSLLRLESEEEAPVHVDIKSTSPQAFDHTVEFETDNLASRRSIGLEDKFRDPITTSHANPSYSPATHGAEKMRFSKTMVPMENADIPFAPRSDEDSSRMHVFCLEHAVEVDQQLRQIGGVHVFLLCHPEYPKIEAEAKLVTEELGIDYPWNDILFGDATKEDEERIQSALDSEDAIPGNGDWAVKLGVNLFYSANLSRSTLYSKQMPYNYVIYSAFGRNSPGSSPTKLNVYGRRSGKQKKVVAGKWCGKVWMSNQVHPFLAQRDPEEQEQERGFHAWATSDENLERKPENVHKAETTKVAKKFNRKRKMRPEIASSKKVKCIETEGAVSDDSLDGGSLRQQQIFFRGKQPRLIQKEEAISYDLLEDDSLLQQRNLSRKKLAKFIEREGAESEDAEEEFTHQQHWRNLRGKQGKYIEEDDAVSGDSLDESSLKQYRRIPRSWQAKFREREDIVSEDELEEISHRLHRRIPRCRQIKSCEKNDAISDDSRADNSLKQYRRMPKGRQANFVERDDTMSDDASEDDSQHQLRRIPKGKQMKCMERDDAFSDDSLEDNLQQQHRIPRSKVAKFTDREDVVSFDSLKGSSHQQRRRVSRSQLTKFIEREDAVSSDSPDDSSLQQLRRIPRSKQTKILEREDAVSDDSLDDTSQQRLRKTPRSRQGKFIEREDAVSYDSLDENYHQPNRRTLRSRKKKAQTPRQIKQETPRNVKQGKRRTTKQVVSQQIKQETPRNRNTKIEQSARQCNSYGEDELEGGPSTRLRKRVRKPLKESETKPKEKKQASKKKVKNASNVKTLAGHNTSKVRDEEAEYQCDMEGCTMSFGLKQELLLHKRNICPVKGCGKKFFSHKYLVQHRRVHLDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHSAKKGRG