Information report for T459_04843
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Actinidia chinensis: CEY00_Acc05581
- Citrullus lanatus: Cla97C05G095010
- Cucumis sativus: CsGy3G024010
- Glycine max: Glyma.05G077800, Glyma.19G071500
- Gossypium hirsutum: Gohir.A10G159100
- Juglans regia: Jr01_06520
- Nicotiana attenuata: A4A49_30879
- Populus trichocarpa: POPTR_017G069300v3, POPTR_001G331400v3
- Prunus avium: Pav_sc0001080.1_g1100.1.mk
- Prunus persica: PRUPE_3G305400
- Sesamum indicum: SIN_1004180
- Solanum lycopersicum: Solyc02g068100.3
- Solanum tuberosum: PGSC0003DMG400006925
- Vitis vinifera: VIT_14s0068g02140
Gene Resources
- Pfam: PF02201
- UniProt: A0A2G3A6B4
- EMBL: AYRZ02000002
- AlphaFoldDB: A0A2G3A6B4
- OMA: REYLWEY
- InterPro: IPR003121 , IPR019835 , IPR036885
- PANTHER: PTHR13844
- SUPFAM: SSF47592
- PROSITE: PS51925
- Gene3D: 1.10.245.10
- CDD: cd10568
- STRING: 4072.A0A2G3A6B4
Sequences
CDS Sequence
- >T459_04843
ATGTTTGTTAACAACAAGAATAACTCTACCAAGAACATCGGAGGACCATCCTCCTTTGGCAATTTGTTGCCGGCAATTCCAACTGCACATGTCCAGTCACAATCACAAGGCCTCCAACAGATGTACACTGAATTTCCTAGGTCATTTCGGTTATCACAGCTATCTGCAACAAATGGCCAAGGAATCAATTCTCCGTCTACAATTCCAATTGCATATCTCCAATCACAATCACAAGGCCAACAGATGCTCGCTGGATTTCCTGGGTCATTTCAGTTGTCTCAGCTATCTGCTACACATGCCCAAGGAATCAATTTACCGCAGGCAAATCTAATTGCATATCTCCAGTCACAATCACAAGGCCAACAACAGATGCCCCCTGGATTTCCTGGGTCATTGCAGTTATTTCAGCTATCTGCAGCACATGCCCAAGCAATCAATTTGCCGCGGACAAATCCAATTGCACATATCCAGCCACAATCACAAGACCAACAACAGATGCCCCCTGGATTTCCTGGGTCATTTCAGCTATCTGCAGCACATGCTCAAGCAATTGCCCAAGCTCAGTTGAAAGATCCGGCTCAAGCACAAGCTGAACATGCGCGATTTCAAGCCCAGTTACAAGCTCAGCATTTGTCTCTTAGCCAGGCTCATGGTCTTGGAAATGTCGGTTCTTCTTCACCTTCGATGCCTGGAAGTAGTTCGGCAAAACGGTTGCCTCAAAAACCTCTGGTGCGTCCACCTGCATTTACGACTACTAATATGATTTCTCCGATGAGAACAAAGCAGCTTTCAGCTGCTTCTCGGAAGAAAAAACAGAAGCTTCCTGAGAAGCACTTGCACGAGAAGGTGGCGGCTATTTTACCTGAATCTGCACTTTATACTCAGCTTCTTGAGTTTGAATCTCGGGTTGATTCTGCTTTAGCTAGAAAGAAAGTTGACATCCAGGAGTCCTTGAAGAATCCACCTACTACTCAGAAAACGCTTCGAATTTATGTCTTCAATACTTTTGCTAATCAGGTTATGACTATTCCTAAGAAGCCAAAGGATGAACCTCCTTTGTGGACCCTTAAGATTGTAGGAAGGATTTTGGAGGAGGGAATGGATGCTGAACAAGCTGCCATGTTTCAGAAGTCTAGCCCCATGTACCCAAAGTTTTCGACTTTCTTCAAAAGAGTCACCATTTCGTTGGACCATAAACTGTATCCTGATAACCATCTTATAATATGGGACTCTGCGCGATCTCCTGCACCTCAGGATGGTTTCGAGGTCAAAAGAAAGGGAGAGGAAGAGTTCACTGTTAATTTAGGACTAGAGTTGAATTACATGCCTGAGAAATACAAACTTTCACCAGCTTTAACTGAAGTTCTTGGTATTGATGTTGAGACTCGTGTGAGAATTATATCTTCTCTCTGGCATTATGTCAAGGTTCAAAAGTTGCAGAACCCTGATGATCCTTCTTACTTCAACTGTGATTCTCCACTTCAGAAAGTTTTCGGGGAAGGAAAGGTTAAGTTCGATACAGTTGCACAAAAGATCACACCTCATTTGTCTCCTCCACAACCCATACATTTGGAACACAGGATTAAACTTTCTGGTAATAACCCTGCTGGAATTGATGCTTGTTATGATGTAATGGTTGATGTGCCATTCCCTATCCAGAGGGAACTGAATGCTCTACTGGCGAACACAGAAGAGACCAAAGAGATTCAAGCTTGTGAAGAAGCAATTGTTTCTGACATAAGGAAGATCCATGAGCATAGAAGGAGAAGGGCTCATTTTCTCGGTTTTAGTCAATCGCCTGTTGAGTTTATTGATGCAGTTCTAGAATCCCAGAGCAAGGATCTGAAAGTTGGTGCGGAGGAAAGTCGCAGTGCTGAGAAAGAGAGTCGGTCTCCATTTTATAGCCAACCATGGTATTTACTAATTCTTTGCCTGCTGCTACTAAATTTTACTTGTCCTTTCTTTATATTAAATTGTGTTCTTGGAAGTTAA
Protein Sequence
- >T459_04843
MFVNNKNNSTKNIGGPSSFGNLLPAIPTAHVQSQSQGLQQMYTEFPRSFRLSQLSATNGQGINSPSTIPIAYLQSQSQGQQMLAGFPGSFQLSQLSATHAQGINLPQANLIAYLQSQSQGQQQMPPGFPGSLQLFQLSAAHAQAINLPRTNPIAHIQPQSQDQQQMPPGFPGSFQLSAAHAQAIAQAQLKDPAQAQAEHARFQAQLQAQHLSLSQAHGLGNVGSSSPSMPGSSSAKRLPQKPLVRPPAFTTTNMISPMRTKQLSAASRKKKQKLPEKHLHEKVAAILPESALYTQLLEFESRVDSALARKKVDIQESLKNPPTTQKTLRIYVFNTFANQVMTIPKKPKDEPPLWTLKIVGRILEEGMDAEQAAMFQKSSPMYPKFSTFFKRVTISLDHKLYPDNHLIIWDSARSPAPQDGFEVKRKGEEEFTVNLGLELNYMPEKYKLSPALTEVLGIDVETRVRIISSLWHYVKVQKLQNPDDPSYFNCDSPLQKVFGEGKVKFDTVAQKITPHLSPPQPIHLEHRIKLSGNNPAGIDACYDVMVDVPFPIQRELNALLANTEETKEIQACEEAIVSDIRKIHEHRRRRAHFLGFSQSPVEFIDAVLESQSKDLKVGAEESRSAEKESRSPFYSQPWYLLILCLLLLNFTCPFFILNCVLGS