Information report for Sspon.03G0028610-3D
Gene Details
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Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Brachypodium distachyon: Bradi2g58130.3.p, BRADI_2g58130v3
- Oryza sativa: LOC_Os01g67970, JMJ705
- Panicum virgatum: Pavir.9NG271400.1.p, Pavir.5KG706100.1.p
- Setaria italica: SETIT_000062mg, Seita.5G420700.1.p
- Setaria viridis: SEVIR_5G426200v2, Sevir.5G426200.1.p
- Zea mays: GRMZM2G339379
Sequences
CDS Sequence
- >Sspon.03G0028610-3D
ATGGCGTCCTCGCAGGGGGAGTCGGTGCCCCCGTGGCTCAAGTCCCTCCCTCTGGCGCCCGAGTTCCGCCCCACCGCGGCCGAGTTCGCCGACCCCATCGCCTACCTCCTCAAGATCGAGCCCGCCGCGGCGCCCTTCGGCATCTGCAAGATCGTGCCACCGCTCCCGCCGCCGCCCAAGCGGACCACGCTCGGTAACCTCTCCCGCTCCTTCGCCGCGCTCCACCCGGACGATCCCACCCCGACATTCCCCACCCGGCACCAGCAGCTGGGCCTCTGCCCGCGCCGCCCGCGCCCCGCGCTCAAGCCCGTGTGGCTCTCCTCCCACCGCTACACGCTCCCCAAGTTCGAGGCCAAGGCCGGCGCCTCCCGGAAGGCGCTGCTCGCGCGCCTTAGCGTCCCCGCCACCAAGCAGCTCTCGCCGCTCGACGTCGAGGCGCTCTTCTGGCGCTCATCCGCCGACCGCCCCGTCGTCGTGGAGTACGCCAGCGACATGCCTGGCTCCGGTTTCGCCCCCTGCGCCGCACGCCCGGCGCAGCTGCCCGCGGCGAACGTGGGCGAGACGGCGTGGAACATGCGCGGCGTCGCCAGGAGCCCCGCCTCTCTGCTGCGCTTCCTGCGGGAGGAGGTGCCTGGGGTCACGTCGCCGATGCTCTACGTCGGCATGATGTTCAGTTGGTTCGCCTGGCACGTCGAGGACCACGACCTGCACAGCCTCAACTACATGCATTACGGGGCTCCCAAGACGTGGTACGGGGTGCCGCGCGACGCTGCTCTCGCCTTCGAGGACGTGGTGCGCGTCCATGGGTATGGCGGGGAGGTGAACCCCTTAGAAACCTTTGCAATGCTGGGTGATAAGACGACGTTGATGTCCCCTGAAGTGCTTCTGGATTCAGGGATTCCCTGCTGCAGATTAGTTCAGAATGCAGGGGAGTTCGTGGTTACTTTCCCCGGAGCATATCACAGCGGGTTCAGTCATGGGTTCAATTGTGGGGAAGCATCAAATTTAGCCACTCCTGAATGGTTGAGAGTTGCAAAAGAGGCAGCAGTCCGGAGAGCTTCCATCAATCGTCCTCCCATGGTTTCGCACTATCAGTTGCTCTATGAACTTGCGCTATCATTATGCTTGAGGGATCCATCAAATGGAGCTATGGAACCACGAAGCTGTAGATTGAAGGAGAAGAAGAAAAGTCAAGGGGACCAATTGATCAAAAAGATTTTTGTGCAAAATGTTATTGAAGACAATAAACTGCTTGGTCATTTTCTGAGTGATGGGTCTCCTTGCATTATTCTTCCAGTCAATTACAATGATGGCTCTCCACTATCAACTTTGCTCTCAAAATTTCAGTCAACAACTGATTCCAGTATGTCGCATGACCAGTGCAGTAAGACAGAAGCTCTGAAAGACTCAAGACGCTTACCAATGGATGGGGCTGACAAGAACCGGGAATTGTCGTCATCCAACAAAATTCCATTGTCAGTCTGTTCAGGAAAGACAGTCCCACCTACAACGTGCATACATGACTGTGCAAACGTGTCTGGCTCATCATATGCACATAATGCAGAAAGTGACAAGAGGGATATGCACAGTGCTACTGGGCTTTTAGACCAGGGTTTATTATCCTGTGTCACTTGTGGGATTTTGAGTTTTTCATGTGTGGCAGTGATCAAACCAAGGGAATGTGCAGCAAAATGGTTAATGACTGCTGATTCTAGTTTGATCAATGATCGACTTGCTAGTTCTGGAGAACATCATATAAATGCGTTACAAGGTGGGAGGACAACTGGTGGAATTTTACGATCAGATTCTAAAATGAATGGCAACAGTGTGATTTCTGATGCTGATGCTGCGCCTCTCAATGGGCATTCTGCTCTTGATCTTTTGGCATCAGCTTATGGAGATCCATCAGATTCTGATGAAGATGTTATGAACAAAAAAGATCAGGTCCCTAATGTCTCCAACGAATTAATAAATCGCACAATTGAATCACAACCCAATACTTCAAATAATGGTGATTGTGATGGAACAAAGGTGTCCTCAAGTAGTAAAGAACGCCAACAAGGACCAACTTCCCAGAGCTCAAAGTGTATTGGTAACTCAAACACCTTGAATGGACCAAAAGGGGTTCGCACTAGAAATAAGGATCTACTTAAGATGGTGCTTTCTGAAGGTTTTCAACCAAAAGACATATATTCGGAGACACATAAGAAGGTTCAGTGTGAACCATCAAGCTCAAACAAGACTTCAACAGAGAGCCCTTGCGGCACAGATTATCATGTTAGCCATAACAGCGCTACAATCTGTATGGACAGCCACAGAGGTTCTATGACTATGGTGAACAACTTAGTTACATCAGTTGTGAAACCTGATAAGGATTCATCAAGAATGCATGTATTTTGTCTTGAACATGCTATTGAGGTTGAGAAGCAACTTCAAGCTATTGGTGGTGCTGATATTTTTCTTTTATGCCGTCCGGAATTTCCCAGAATAGAAGCAGAAGCAAGATTGCTGGCTGAAGAAATGGAATTTGAGTATGATTGGAAGGATATTCTTTTCAAAGAGGCCACTATCGAGGATAGGGAGAAGATACATGAAGTTGTGCGGGATGAGGAAGCAATACCAACAAATAGTGATTGGGCTGTAAAACTGGGCATTAATCTTTACTATAGTGCTAATCTTGCTAAGTCTCCTTTATACAACAAGCAAGTGCCATACAATAGAGTTATCTATGAGGCATTTGGTTATGGTTCTCCCAATGACTCACCAGTAAAGCTGAAGACTTATTCCAGAAGGCAAGGCCGGGCGAAGAAAATAGTCTTGGCTGGTAGGTGGTGTGGGAAAGTATGGATGTCAAACCAGGTTCATCCATACCTGGCTGACAGAATCAAAATTCATGAGCCGGAAGAAATTGATGAAACCTTCACTTCTGATCAGAAATCCAATGCTGAACCTGTTGAAGATTCAAGTAGAGAGGCAGCCTCCACAAGAAACAGTAGCAGCAGGGCAATCGAAGGAAAAACAACCAAGATGGAGAAAGGACCATTGGAGAAAGCTAATGCCAAGAAGCCAAAATTTACTGAAGAGGACAATTCCAAATCATTAGAAGGTACTGCTGAAGCCTCCACACAGAAGATAAAGAGCAGAACAGTTCTAGAAAAAACAAGCAAGAGGGAGAAAGAGCATGTGGAGAAAGCAAATACCAAGCTAAAACATACTGAAAAGGTCATTTCAGAAGCTCTAAAAGGTCCTTCAGAAGCCTCCTTCCCCGCACCAGCTGGGATGGTAGTCCGCAGTAGCTCTAGGATTGCCAATAGGAAAAGCATATTGAGATCAAAGATGGAAGAAGAGGATAATGGCTCAGCTAACCGTCCAAAGTCAAAGGTTGAAGATGACAAAGATAATCCTGCTGGACGTTCAAGAGCAAAATCACTGAGGCAAAAGACTAAAGTTGACGTGAAGAAGAAAACAAAGGAAACTAGAGCAGAAAAGCGAAAGGCTCCTAGTCCAGCTTCTTGGAAGGACGAAGAAGAGCAACCATATGATGTTGAGGGATGTTCTATCACTAAACAACAGCTGTCTTTAAGTAAGAAGAGGGCTAAAATAGAAGAAAAGCAGCAAATGGAGAAATCTAGGTACAGGGGAAGGGCTCCCCCAAGTTCTCCAAAGCGCAAGGAAGCTCCCCCAAGTTCTCCAAAGCGCAAGGAAGAGTATGCTTGTGACATTGAAGGCTGTTCCATGAGTTTTGGCACAAAACAGGCGCTGTCTCTGCATAAGAATGATATCTGCCCAGAGAAGGGCTGTTGCAGGAAGTTCTTCTCGCACAAGTATCTTCTACAGCACCGCAAGGTTCACACCGATGACCGTCCACTGAAATGCCCGTGGAAGGGCTGCAGCATGGCGTTCAAGTGGCCATGGGCTAGGACAGAGCACATGAGGGTTCACACGGGCGACAGGCCCTATGTTTGCCCTGAACCAGAGTGCGGGCAGACATTCAGGTTCGTCTCTGATTTCAGCCGCCACAAGCGCAGGACAGGCCATGCAGGCATGCCAACCAAGAAAGCGAAAGGAAAGAAGTGA
Protein Sequence
- >Sspon.03G0028610-3D
MASSQGESVPPWLKSLPLAPEFRPTAAEFADPIAYLLKIEPAAAPFGICKIVPPLPPPPKRTTLGNLSRSFAALHPDDPTPTFPTRHQQLGLCPRRPRPALKPVWLSSHRYTLPKFEAKAGASRKALLARLSVPATKQLSPLDVEALFWRSSADRPVVVEYASDMPGSGFAPCAARPAQLPAANVGETAWNMRGVARSPASLLRFLREEVPGVTSPMLYVGMMFSWFAWHVEDHDLHSLNYMHYGAPKTWYGVPRDAALAFEDVVRVHGYGGEVNPLETFAMLGDKTTLMSPEVLLDSGIPCCRLVQNAGEFVVTFPGAYHSGFSHGFNCGEASNLATPEWLRVAKEAAVRRASINRPPMVSHYQLLYELALSLCLRDPSNGAMEPRSCRLKEKKKSQGDQLIKKIFVQNVIEDNKLLGHFLSDGSPCIILPVNYNDGSPLSTLLSKFQSTTDSSMSHDQCSKTEALKDSRRLPMDGADKNRELSSSNKIPLSVCSGKTVPPTTCIHDCANVSGSSYAHNAESDKRDMHSATGLLDQGLLSCVTCGILSFSCVAVIKPRECAAKWLMTADSSLINDRLASSGEHHINALQGGRTTGGILRSDSKMNGNSVISDADAAPLNGHSALDLLASAYGDPSDSDEDVMNKKDQVPNVSNELINRTIESQPNTSNNGDCDGTKVSSSSKERQQGPTSQSSKCIGNSNTLNGPKGVRTRNKDLLKMVLSEGFQPKDIYSETHKKVQCEPSSSNKTSTESPCGTDYHVSHNSATICMDSHRGSMTMVNNLVTSVVKPDKDSSRMHVFCLEHAIEVEKQLQAIGGADIFLLCRPEFPRIEAEARLLAEEMEFEYDWKDILFKEATIEDREKIHEVVRDEEAIPTNSDWAVKLGINLYYSANLAKSPLYNKQVPYNRVIYEAFGYGSPNDSPVKLKTYSRRQGRAKKIVLAGRWCGKVWMSNQVHPYLADRIKIHEPEEIDETFTSDQKSNAEPVEDSSREAASTRNSSSRAIEGKTTKMEKGPLEKANAKKPKFTEEDNSKSLEGTAEASTQKIKSRTVLEKTSKREKEHVEKANTKLKHTEKVISEALKGPSEASFPAPAGMVVRSSSRIANRKSILRSKMEEEDNGSANRPKSKVEDDKDNPAGRSRAKSLRQKTKVDVKKKTKETRAEKRKAPSPASWKDEEEQPYDVEGCSITKQQLSLSKKRAKIEEKQQMEKSRYRGRAPPSSPKRKEAPPSSPKRKEEYACDIEGCSMSFGTKQALSLHKNDICPEKGCCRKFFSHKYLLQHRKVHTDDRPLKCPWKGCSMAFKWPWARTEHMRVHTGDRPYVCPEPECGQTFRFVSDFSRHKRRTGHAGMPTKKAKGKK