Information report for SORBI_3004G231200
Gene Details
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Functional Annotation
- Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Homologous
- Setaria italica: SETIT_016290mg
- Setaria viridis: SEVIR_1G332000v2
- Triticum aestivum: TraesCS6A02G318300
- Zea mays: GRMZM2G059958
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A921UJ57
- RefSeq: XP_002452532.1
- EMBL: CM027683
- KEGG: sbi:8075687
- OMA: SSRGEMF
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF381
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- OrthoDB: A0A921UJ57
Sequences
CDS Sequence
- >SORBI_3004G231200
ATGGAGGAGGGCAGCAAGGCGCAACTGCCGTCCCCATCTCACACTGAAGCCATGGAGCAGCTGGCACCCGTCCCAATGGACCAAGATGAGGGCCGGGAAGCCGCGGAAACCATGGAGGAAGAAGAAGCCACGGCCGCAGATGTCTCCGATGCCGCGGATCCCATGGAAGACGGGGAGGCGGCAGGAGACTCCGCGGCAGCCGCGGAGCCCATGGAGGACGACGCGCCCACGTCCTCCCCGACTCCCTCCGCGCCGTCGGCCACCGCGGCCGTCGACGACTCCACCATCGCGCGGAAGCGCCGCCGCCGTAAGAAGCAGTTCCCCGGTATGATCCCCACGGCCGGCGTCCGCGTCCTGCGCGGCTCCTCCTCCTCTTCCTCCCATACCGCGGCGCATCTGACCGGCGTCCCTCGACGCCGGGGACGGCCCCCCACCTCATCCTCTCTCCGCCTTGCCCGGGAGCTCGATTCTGAGGCCCTCATCGCTCTCGCTGCGGGGTTCCCCGCGGACTCCCTCTCCGAGGACGAGATCGTGGCCGCCGTGCTCCCACGCATTGGCGGCGCTGAGCAGGCCAACTACCTTGTCGTCCGCAATCACATTGTGGCGCTCTGGCGTTCTAATCCCCTCTCCCCCGTTGCCGCCAACGCCGCGCTCGCATCCATTCGAGCCGAGCACGCTCCCCTTGTTGCTGCGGCGCATTCCTTCCTGTCTGAGCACGCATACATCAATTTCGGTCTCGCCCCCGCCGTCCTCTCGCTTCCCCCACAGCCTCCTCCCTCTTCTCCTACCCCATCCATCCTCATTGTTGGCGCCGGACTTGCTGGTCTGGCTGCCGCAAGACACCTGATTGCGTTTGGATTCAAGGTGGCCGTCATTGAAGGCCGGTTCCGACCTGGTGGCCGTGTGTTTACCAAGACAATGCGTTCTTCTGCTGTAGAGTATCCCGACACTGTTGCTGCTGCTGACCTTGGAGGCAGCGTTCTCACCGGTATCAATGGTAATCCCCTTGGTGTCATTGCTCGTCAGCTTGGATTCCCGCTCCACAAGGTGCGGGATAAATGCCCGCTGTATCTTCCAGATGGCCGCCCAGTTGACCCTGACATGGATGCTCGTGTTGAAGCTGCCTTTAACCAGCTTCTGGACAAGGTTTGCCAGTTGAGACAGGTGATTGCAGATGGTGTACCACATGGTGTTGATTTGTCATTGGGCATGGCGCTTGAGGCGTTCCGGGCAGCGCATGGTGTTGCAGCTGAGCATGAAGAAAGGATGCTTCTGGACTGGCATCTGGCAAACCTGGAGTACGCTAATGCTGCCCCTCTTGCTGATCTCTCGATGGCCTTCTGGGATCAGGACGATCCATATGAAATGGGCGGAGACCACTGCTTTATTCCTGGTGGAAATTCCCAGTTTGTCCGTGCATTCGCTGATGGCATCCCGATATTCTATGGGCAGAACGTGAAAAGGATACAGTATGGACGTGATGGCGTGATGGTTCACACTGATAAACAGGCATTTTGTGGTGATATGGTGCTGTGTACAGTTCCTCTTGGCGTGCTAAAGAAGGGCGACATCAAGTTTGTGCCTGAGCTGCCAGCTCAGAAGAAAGAGGCCATACAAAGATTGGGTTTTGGTCTGCTTAACAAGGTTGTGATGCTGTTCCCACATGATTTCTGGGATGGCACGATTGATACATTTGGTCACTTGACAGAAGACTCTGGCCAGCGTGGTGAGTTCTTCTTGTTTTACAGCTATTCTTCTGTCTCAGGAGGGCCATTGCTCATTGCTCTTGTTGCTGGGGAATCTGCAGTCAAGTTTGAGCAGGCTTCACCTATGGAAAATGTCGAGAAGGTACTGGAAACACTTAGGAAAATCTTTTCACCCAAGGGGATTGACGTTCCAAATCCGTTGCAAGCAATATGCACTCGATGGGGCACAGACAGGTTTACTTATGGATCATACTCATATGTGGCTATTGGGGCTTCTGGTGATGACTATGACATTTTGGCTGAGAGTGTGCATGATAGAGTTTTCTTTGCTGGGGAGGCAACAAATAGGCGGTACCCCGCTACAATGCATGGAGCCCTGCTTAGTGGGTATAGAGAGGCTGCTAACATCTTAAGAGCAGTTAGAAGGAGAGCAAAAAATGTTAACTCTCCTGAGAAAATGGATATTAATGTTGAAGTAAAAGTGGGTGTTAATGGTGAAGTCAAAGACACTGATAAAGATAGCTGCATTGATTTGGACGATCTATTCCGTTCTCCTGATGCTGCTTTTGGGGGGTTCTCAGTTCTCCATGACCCATCTACCTTTGAACCAGATTCAGTTTCTTTGCTGCGTGTTGGAATTGGTGCTAGAAAGTTAGGCTCTGGTTCACTTTTCCTCTATGGATTAATAATGAGAAAGCATGTAGTTGTGTTGGCTGCAATAGAGGGTGATGAACAGCGGTTGAGTACAATGTACCGAGATTTTGGGACAAAACTGGTGGGATTGGATAGCTTGGGTGATGCTGGGGAAAGCCTTATTTCTCGGATAAAGGCTGCCGCTAGGAAATAA
Protein Sequence
- >SORBI_3004G231200
MEEGSKAQLPSPSHTEAMEQLAPVPMDQDEGREAAETMEEEEATAADVSDAADPMEDGEAAGDSAAAAEPMEDDAPTSSPTPSAPSATAAVDDSTIARKRRRRKKQFPGMIPTAGVRVLRGSSSSSSHTAAHLTGVPRRRGRPPTSSSLRLARELDSEALIALAAGFPADSLSEDEIVAAVLPRIGGAEQANYLVVRNHIVALWRSNPLSPVAANAALASIRAEHAPLVAAAHSFLSEHAYINFGLAPAVLSLPPQPPPSSPTPSILIVGAGLAGLAAARHLIAFGFKVAVIEGRFRPGGRVFTKTMRSSAVEYPDTVAAADLGGSVLTGINGNPLGVIARQLGFPLHKVRDKCPLYLPDGRPVDPDMDARVEAAFNQLLDKVCQLRQVIADGVPHGVDLSLGMALEAFRAAHGVAAEHEERMLLDWHLANLEYANAAPLADLSMAFWDQDDPYEMGGDHCFIPGGNSQFVRAFADGIPIFYGQNVKRIQYGRDGVMVHTDKQAFCGDMVLCTVPLGVLKKGDIKFVPELPAQKKEAIQRLGFGLLNKVVMLFPHDFWDGTIDTFGHLTEDSGQRGEFFLFYSYSSVSGGPLLIALVAGESAVKFEQASPMENVEKVLETLRKIFSPKGIDVPNPLQAICTRWGTDRFTYGSYSYVAIGASGDDYDILAESVHDRVFFAGEATNRRYPATMHGALLSGYREAANILRAVRRRAKNVNSPEKMDINVEVKVGVNGEVKDTDKDSCIDLDDLFRSPDAAFGGFSVLHDPSTFEPDSVSLLRVGIGARKLGSGSLFLYGLIMRKHVVVLAAIEGDEQRLSTMYRDFGTKLVGLDSLGDAGESLISRIKAAARK