Information report for SORBI_3003G394900
Gene Details
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Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Oryza sativa: LOC_Os01g67970, JMJ705
- Panicum virgatum: Pavir.9NG271400.1.p, Pavir.5KG706100.1.p
- Saccharum spontaneum: Sspon.03G0028610-3D, Sspon.03G0028610-1P, Sspon.03G0028610-1B
- Setaria italica: SETIT_000062mg, Seita.5G420700.1.p
- Setaria viridis: SEVIR_5G426200v2, Sevir.5G426200.1.p
Gene Resources
- Pfam: PF02373 PF02375
- UniProt: A0A1B6Q7Q4
- EMBL: CM000762
- OMA: MRFREPS
- InterPro: IPR003347 , IPR003349 , IPR013087 , IPR036236
- PANTHER: PTHR10694 , PTHR10694:SF38
- SUPFAM: SSF51197 , SSF57667
- PROSITE: PS00028 , PS50157 , PS51183 , PS51184
- Gene3D: 2.60.120.650 , 3.30.160.60
- OrthoDB: A0A1B6Q7Q4
- eggNOG: KOG1246 , KOG1721
- STRING: 4558.A0A1B6Q7Q4
Sequences
CDS Sequence
- >SORBI_3003G394900
ATGGCGTCCTCGCAGGGGGAGCCGGTGCCCCCGTGGCTCAAGTCCCTCCCTCTGGCGCCCGAGTTCCGCCCCACCGCGGCCGAGTTCGTCGACCCCATCGCCTACCTCCTCAAGATCGAGCCCGCCGCGGCGCCCTTCGGCATCTGCAAGATCGTGCCACCGCTCCCGCCGCCGCCCAAGCGGGCCACGCTCGGTAACCTCTCCCGCTCCTTCGCCGCGCTCCACCCGGACGATCCCACCCCGACATTCCCCACCCGGCACCAGCAGCTGGGCCTCTGCCCGCGCCGCCCGCGCCCCGCGCTCAAACCCGTCTGGCTCTCCTCCCACCGCTACACGCTCCCCAAGTTCGAGGCCAAGGCCGGCGCTTCCCGGAAGGCGCTGCTCGCGCGCCTCAGCGTCCCCGCCACCAAGCAGCTCTCGCCGCTCGACGTCGAGGCGCTCTTCTGGCGCTCATCCGCCGACCGCCCTGTCGTCGTGGAGTACGCCAGCGACATGCCTGGCTCCGGGTTCGCCCCCTGCGCCGCACGCCCGACGCAGCTTCCCGCGGCGAACGTGGGCGAGACGGCGTGGAACATGCGCGGCGTGGCAAGGAGCCCCGCCTCTCTGCTGCGCTTCGTGCGGGAGGAGGTGCCCGGGGTCACGTCGCCGATGCTCTACGTCGGCATGATGTTCAGTTGGTTCGCCTGGCACGTCGAGGACCACGATCTGCACAGCCTCAATTACATGCATTACGGTGCTCCCAAGACGTGGTACGCGGTGCCGCGCGACGCTGCACTCGCCTTCGAGGAGGTGGTGCGCGTCCATGGGTATGGCGGGGAGGTGAACTCCTTAGAAACCTTTGCAATGCTGGGTGATAAGACGACGGTGATGTCCCCTCAAGTGCTCGTGGATTCAGGGATTCCCTGCTGCAGATTAGTTCAGAATGCAGGGGAATTCGTGGTTACTTTTCCCAGAGCATATCACAGCGGGTTCAGTCATGGGTTCAATTGTGGGGAAGCATCAAATATAGCCACTCCTGAATGGTTGAGAGTTGCAAAAGAGGCAGCAGTCCGGAGAGCTTCCATCAATCGTCCTCCCATGGTTTCGCACTATCAGTTGCTCTATGAACTTGCACTGTCATTGTGCTTGAGGGATCCATCAAATGGAACTATGGAACCACGAAGCTGTAGATTGAAGGAGAAGAAGAAAAGTGAAGGGGACCAATTGATCAAAAAGATATTTGTGCAAAATGTTATTGAAGACAATAAACTGCTTGGTCATTTTCTGAGTGATGGGTCTTCTTGCATTATTCTTCCAGTCAATTACAGTGATGGCTCTCCACTATCAACTTTGCTCTCAAAATTTCAGTCAACAACTGATTCCAGGATATCGCATGACCAGTGCAGTAAGACAGAAGCTCCGAAAGACTCAAGATGCTTACCAAAGGATCAGGCTGACAAGAACTGGGAATTGTCGTCATCCAACAAAATATCATTGTCAGTCTGCTCGGGAAAGACAGTCCCACCTACAACGTGCATATATGACTGTGCAAACATGTCTGCCTCATCATACACACATAATACAGAAAATAACAAGGGGGGTATGAACAGTGCTGCTGGTCTTTTAGACCAGGGTTTATTATCCTGTGTCGCTTGCGGGATTTTGAGTTTTTCATGTGTGGCAGTGATCAAACCAAGGGAGTGTGCAGCAAAATGGTTAATGACTGCTGATTCTAGTTTGATCAACGATCGACTTGCTAGTTCTGGAGAGCATCATATGATAGATGGGTTACAAGGTGGGAGGACAACTGGTGGAATTTTACGATCAGATTCTGAAATGAATGGCAATAGTATAATTTCTGATGCTGATGATGTGCCTCTCAATGGGTGTTCTGCTCTTGATCTTTTGGCATCAGCTTATGGAGATCCATCAGATTCTGATGAAGATGTTATGAACAAAAAAATTCAGATTCCTAATGTCTCCAACGAATTAATAAATCACACAGTTGAATCACAACCCAATACCTCAAATAATGGTGATTGTGATGGAACAAAGGTGTCCTCAAGTAGTAAAGAAAGCCAACAAGGACCAACTTCCCAGAATTCAAAGTGTATTGGTAACTCAAACACCTTGAATGGACCAAAAGGTGTTCGCACTAGAAATAAGGATCTACTTAAGATGGTGCTTTCTGAAGGTTTTCAACCAAAAGATATATATTCAGAAACGCATAAGAAGGTTCAGTGTGAACCATCAAGCTCAAACAAGACTTCAACAGAGAGCCCTTGCAGCACAGAATATCATGTTAGCCATAACAGTGCTACAATCTGTATGGACAACAACAGAGGCTCTATGACTATGGTGAACAACTTAGTTACATCAGTTGTGAAACCTGATAAGGATTCATCAAGAATGCATGTATTTTGTCTTGAACATGCTATTGAGGTTGAGAAGCAACTTCAAGCTATTGGTGGTGCTGATATTTTTCTTCTATGCCGTCCAGAATATCCCAGAATAGAAGTAGAAGCAAGATTGCTGGCTGAAGAAATGGAATTTGTGTATGATTGGAAGGATATTCTTTTCAAAGAGGCCACTATCGAGGATAGGGAGAAGATACAGGAAGTTGTGCAGGATGAGGAAGCAATACCAACAAATAGTGATTGGGCTGTAAAACTGGGCATTAATCTTTACTATAGTGCTAATCTTGCTAAGTCTCCTTTATACAACAAACAAGTGCCATACAATCGAGTTATCTATGAGGCATTTGGCTATGGTTCTCCCAATGATTCACCAGTAAAGCTGAAGACTTATTCCAGAAGGCAAGGCAGGGCGAAGAAAATAGTCTTGGCTGGCAGGTGGTGTGGGAAAGTATGGATGTCAAACCAGGTCCACCCATACCTGGCTGACAGAATCAAAATTCATGAGCCAGAAGAAACCGATGAAACTTTTCCTTCTGATCAGAAATCAAATGCTGAACCTGTTGAAGATTCAAGTAGACAGGCAGCCTCCACAAGAAAGAGTAGCAGCAGAGCAATTGAAGGAAAAATAAGCAAGAGGGAGAAAGAATCATTGGAGAAAGCTAATGCCAAGAAGCCAAAAATTACTGAAGAGGATAATTCCAAATCTTTAGAGGGTACTGCTGAAGCCTCCACACAGAGCAGAACAGCTCTAGAAAAAACAAGCAGGAAGGAGAAAGAACATGTGGAGAAAGCAAATACCAAGAAGCTCAAACATACTGAAAAGGTCTCGGAAGCAATAAAAGGTCCTTCAGAAGCCTCCTACCCCGCACCAGCTGGGATGGTAGTCCGCAGTAGCTCTAGGATTGCCAATAGGAAAAGCATGTTGAAATCAAGGATGGACGAAGAGGATATTGGCTCAACCAACCGTCCAAAGTCAAAGGTTGAAGACGACAAAGATAATCCTGCTGGCCGTTCAACAGCAAAATCACTAAGGCAAAAGACTAAACTAGATGCAAAGAAGAAAACAAAGGAAACTAGAGTAGAAAAGCGAAAAGCTCCTAGTCCAGCTTCTCAGAAGGATGAAGAAGAGCAGTCGTATGAGGGGTGTTCTATCACTAAACAACGGTTGTCTTTACGTAAGAAGGGGGCTAAAATAGAAGAAAAGCAGCAGCAAATGGAGAAATCTAGATACAGAGGAAGGGCTCCCCCAAGTTCTCCAAAGAGTAAGGAAGAGTATGCGTGCGACGTTGAAGGTTGTTCCATGAGTTTTGGCACAGAAGAGGCGCTGTCTCTGCATAAGAATGATATCTGCCCAGAGAAGGGCTGTTGCAGGAAGTTCTTCTCGCACAAGTATCTGCTGCAGCACCGTAAGGTTCACACCGATGACCGTCCACTGAAATGCCCGTGGAAGGGCTGCAGCATGGCGTTCAAGTGGCCGTGGGCTAGGACAGAGCACATGAGGGTTCACACGGGAGACAGGCCCTATGTTTGCCCTGAACCAGAGTGCGGGCAGACATTCAGGTTCGTCTCTGATTTCAGCCGCCACAAGCGCAGGACAGGCCATGCAGGCATGCCAGCCAAGAAAGCGAAAGCAAAGAAGTGA
Protein Sequence
- >SORBI_3003G394900
MASSQGEPVPPWLKSLPLAPEFRPTAAEFVDPIAYLLKIEPAAAPFGICKIVPPLPPPPKRATLGNLSRSFAALHPDDPTPTFPTRHQQLGLCPRRPRPALKPVWLSSHRYTLPKFEAKAGASRKALLARLSVPATKQLSPLDVEALFWRSSADRPVVVEYASDMPGSGFAPCAARPTQLPAANVGETAWNMRGVARSPASLLRFVREEVPGVTSPMLYVGMMFSWFAWHVEDHDLHSLNYMHYGAPKTWYAVPRDAALAFEEVVRVHGYGGEVNSLETFAMLGDKTTVMSPQVLVDSGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEASNIATPEWLRVAKEAAVRRASINRPPMVSHYQLLYELALSLCLRDPSNGTMEPRSCRLKEKKKSEGDQLIKKIFVQNVIEDNKLLGHFLSDGSSCIILPVNYSDGSPLSTLLSKFQSTTDSRISHDQCSKTEAPKDSRCLPKDQADKNWELSSSNKISLSVCSGKTVPPTTCIYDCANMSASSYTHNTENNKGGMNSAAGLLDQGLLSCVACGILSFSCVAVIKPRECAAKWLMTADSSLINDRLASSGEHHMIDGLQGGRTTGGILRSDSEMNGNSIISDADDVPLNGCSALDLLASAYGDPSDSDEDVMNKKIQIPNVSNELINHTVESQPNTSNNGDCDGTKVSSSSKESQQGPTSQNSKCIGNSNTLNGPKGVRTRNKDLLKMVLSEGFQPKDIYSETHKKVQCEPSSSNKTSTESPCSTEYHVSHNSATICMDNNRGSMTMVNNLVTSVVKPDKDSSRMHVFCLEHAIEVEKQLQAIGGADIFLLCRPEYPRIEVEARLLAEEMEFVYDWKDILFKEATIEDREKIQEVVQDEEAIPTNSDWAVKLGINLYYSANLAKSPLYNKQVPYNRVIYEAFGYGSPNDSPVKLKTYSRRQGRAKKIVLAGRWCGKVWMSNQVHPYLADRIKIHEPEETDETFPSDQKSNAEPVEDSSRQAASTRKSSSRAIEGKISKREKESLEKANAKKPKITEEDNSKSLEGTAEASTQSRTALEKTSRKEKEHVEKANTKKLKHTEKVSEAIKGPSEASYPAPAGMVVRSSSRIANRKSMLKSRMDEEDIGSTNRPKSKVEDDKDNPAGRSTAKSLRQKTKLDAKKKTKETRVEKRKAPSPASQKDEEEQSYEGCSITKQRLSLRKKGAKIEEKQQQMEKSRYRGRAPPSSPKSKEEYACDVEGCSMSFGTEEALSLHKNDICPEKGCCRKFFSHKYLLQHRKVHTDDRPLKCPWKGCSMAFKWPWARTEHMRVHTGDRPYVCPEPECGQTFRFVSDFSRHKRRTGHAGMPAKKAKAKK