Information report for SELMODRAFT_88677
Gene Details
|
|
Functional Annotation
- Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.
Homologous
- Actinidia chinensis: CEY00_Acc22153
- Beta vulgaris: BVRB_9g219140
- Citrullus lanatus: Cla97C07G139070
- Cucumis sativus: CsGy4G001800
- Glycine max: Glyma.08G214600, Glyma.07G028000
- Juglans regia: Jr12_20240
- Manihot esculenta: MANES_09G124300, MANES_04G108600
- Musa acuminata: Ma04_g12340, Ma04_g09920, Ma04_g11560
- Oryza sativa: OsTPL;ASP1
- Prunus persica: PRUPE_3G093100
- Rosa chinensis: RchiOBHm_Chr2g0134371
- Vitis vinifera: VIT_16s0039g02410
Gene Resources
- Pfam: PF00400
- UniProt: D8R9N4
- RefSeq: XP_002967579.1
- EMBL: GL377574
- AlphaFoldDB: D8R9N4
- KEGG: smo:SELMODRAFT_88677
- OMA: MEDSVIH
- InterPro: IPR001680 , IPR006594 , IPR006595 , IPR011047 , IPR015943 , IPR027728 , IPR036322 , IPR048419 , IPR054080 , IPR054532
- PANTHER: PTHR44083 , PTHR44083:SF45
- SUPFAM: SSF50978 , SSF50998
- PROSITE: PS50082 , PS50294 , PS50896 , PS50897
- Gene3D: 2.130.10.10
- eggNOG: KOG0266
- STRING: 88036.D8R9N4
- HOGENOM: CLU_003103_1_0_1
Sequences
CDS Sequence
- >SELMODRAFT_88677
ATGTCGTCGCTCAGTAGGGAGCTTGTGTTCCTCATCCTCCAGTTCCTCGACGAGGAGAAGTTCAAGGAGACTGTTCACAAGCTAGAGCAAGAGTCGGGATTTTTTTTCAACATGAAGTATTTCGAGGACCAAGTTCAGAACGGCGAATGGGATGAAGTGGAGCGTTACTTGTCGGGCTTTACCAAGGTAGATGACAATCGCTATTCAATGAAGATCTTTTTCGAAATTCGCAAGCAAAAGTATTTGGAAGCACTGGACAAGCAAGAAAGAGCGAAAGCCGTTGAGATTCTCGTCAAGGACCTCAAGGTGTTTGCGTCATTCAATGAGGACTTATACAAAGAGATTACACAGCTTCTTACTCTCGACAACTTTAGAGAAAATGACCAACTGTCGAAGTATGGAGATACGAAATCCGCAAGAAATATAATGCTTATCGAACTTAAAAAACTCATCGAAGCGAATCCTCTATTTAGAGAAAAACATCAATTTCCATCATTGAAGGCATCACGGCTTCGCACCCTTATCAACCAGAGTCTGAATTGGCAACATCAATTATGTAAAAATCCTCGGCCCAATCCCGACATCAAAACTTTATTTATCGACCACAGTTGTGGTCCTCCGAACGGAGCGCGTGCGCCTCCGCCTGCCAACAATCCTCTAGTTGGAGCGATGCAGAAAACTGCGGCCTTCCCTCCACTTGGAGCACACGGGCCTTTTCAACCATCTGCTGGTCCTCCTGCAAGTGCGCTAGCCGGTTGGATGGGAAATGCAAATTCCGCAGCCCCTCACGCAGCAGTAGCTCCTGGCCAGGCGCTACCTGGTCCGCCAAATCCAGCTGCTCTTTTGAAGCGTCCCAGAACACCCCCGGCAAATTCGACCATTGACTATCAGTCGGCAGATTCGGAACACATTCTTAAACGCCCGCGTCCTCAGGCAGACGAGGTGAACTATGCTGGAGCAAGTCATCAACGCAACGCTACTTTGGACGATCTTCCAAAGACACATGCTAGAACTTTAAACCAGACGTCGTCCGTGACTAGCATGGACTTTCATCCAATGCATCAAACCGTATTGCTTGTGGGTACAAATATTGGCGAAATTAGCATCTGGGAGGTAGCATCGCGAGAGAAATTGGCATATCGGACTTTCAAAGTGTGGGATATTTCTGCATGTTCTGTTACGATGCAGACGGCATTTGTGAAGGACCCAGCTGTTCTTGTTCACAGGGTGGTTTGGAGTCCAGATGGAGCTCTTATCGGTGTGGCTTTCTCCAAATTTATTATTCATCTTTATATGTACAATGGAACATCTGAGCTTAGGCAACTTCACGAGATCGATGCTCATGTTGGTGGAGTCAACGACCTTGCATTTTCTCATCCCAACAAGCAACTCTGTGTTATTACTTGTGGAGACGATAAGACCATAAAGGTTTGGGAAGCCATGACCGCTCGCAAGATTTATGTATTTGAAGGTCATGAGGCAGCAGTGTATTCTGTATGTCCACATCATAAAGAAAGCATACAGTTTATATTTTCCACCGCACTTGATGGGAAAATCAAAGCTTGGCTTTACGATAATCTCGGTTCTCGAGTAGATTATGATGCTCCTGGTCGCTGGTGCACAACAATGGCTTACAGTGCGGATGGAACAAGATTGTTTTCTTGTGGAACAAGCAAGGATGGTGAGTCTTTTCTTGTGGAGTGGAATGAAAGTGAAGGTGCAATTAAAAACACCTACAATGGTTTTCGGAAACGCTCCATCAATGTGATTCAGTTTGATACTACACGGAATCGGTTTTTGGCTGCTGGAGACGACTTCTCCATCAAAATATGGGATATGGATAATATTAATCTTTTGACGACGATAGATGCCGACAGTGGTCTTCCGCCAAGCCCTCGTTTACGGTTTAACAAAGAAGGAACATTGCTGGCTGTAACCACTCAAGACAACTCCATCAGAATTCTAGCTAACAACGACGGTTTACGGCTTTTGAATAGGGCGATTGAGAAAGTAAATGAGGTGAAGCCTGCGGTTAACACGCTTGCAGCAGTAAGTGGAGTAACTGCTCCAGTAGTCGCTGTAGATAGAAATGGCGCTGAAAATAGTCGTGCTGTCGAAGTAAAACCGCGTGCAGACGAAGGAATTGACAAAAAGAATTGGAAACTAGCTGATTTAACTGAGCAAGCCCATTGCCGTTCAATAAGGTTAGGGGATCAAATGGCTGCGAGCAAGGTGTTGAGACTAATTTACACTAACGCCGGAAATGCACTTCTTGCACTTGGATCAAACGCCATTCATAAATTGTGGAAATGGCAAAAGAACGACTGGAATGTGGCTGGGAAGGCAACTGCTAATTTTGCTCCCCAGCTATGGCAACCTCAGAGTGCGGGCTTTATGACAAATGATGTGGGCGAAACTGATCCAGAAGAAGCTGTTCCGTGCATCGCCTTGTCTAAAAATGATTCATATGTGATGTCTGCCTCGGGTGGAAAAGTTCTGCTTTTCAACATGATGACGTTTAAGATTATGACACAATTCATGCCGCCTCCGCCAGCAGCAACATTCCTCGCTTTTCATCCTCAGGATAATAATTTTATTGCTATCGGTATGGAGGATTCGGTTATCCATATATACAACGTTCGTGTCGATGAGGTGAAAACCAAACTAAAAGGGCATTCCAAGAGAATAACGGGACTTGCGTTTTCCAATAATCTTAATATTCTTGTTTCGTCTGGGGCTGACGGACAGCTCTGTGTTTGGGGAACCGATGCATGGGATAAAAGAAAGTCCAAGTTTATTCAAATGCCGCCTGGGAAAGATGCAACTCCCACTGGTGACACGAGGGTACAGTTCGACGTTGATCAGACGCGGCTGTTGATTGTGCACGAGACTCAGCTTGCAATATACGACGCTACTAAGCTGGAATCAATCCATCAGGCAACTATTCATGACATTGTTTCTTTCCAGTGGTATCTTCGGGACCCCTTCCCTGCTTCCGTTTCGAGTGCTACATTTTCATGCGACAGCGAGCTCGTTTATGCCGCTTTCATCGATGGCTCCGTGGGAGTGTTTGAGACGGATGGTTTACGGCCAAGGTGCCGTCTAGCACCATCAACTTATCTTCCTCCTGGAGCTAGCGGGACTTCGGTGTACCCTCTAGCAATCTCCGCTCATCCAACCGAGAAGTATCAATTCGCTCTGGGACTAAGTGACGGAGGAGTTCTCGTTGTGGAACCATTGGAACCCGACGGTAAGTGGGGGCCGATTCCAGTCACAGACAATGGAGCAGCAGCGTCGGGTGCTACTGGCGTTCCACCACCAGCGGATCAAAACGCAGAGCAATCGGGTGCCAGAGCGTCATAG
Protein Sequence
- >SELMODRAFT_88677
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQNGEWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKQERAKAVEILVKDLKVFASFNEDLYKEITQLLTLDNFRENDQLSKYGDTKSARNIMLIELKKLIEANPLFREKHQFPSLKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCGPPNGARAPPPANNPLVGAMQKTAAFPPLGAHGPFQPSAGPPASALAGWMGNANSAAPHAAVAPGQALPGPPNPAALLKRPRTPPANSTIDYQSADSEHILKRPRPQADEVNYAGASHQRNATLDDLPKTHARTLNQTSSVTSMDFHPMHQTVLLVGTNIGEISIWEVASREKLAYRTFKVWDISACSVTMQTAFVKDPAVLVHRVVWSPDGALIGVAFSKFIIHLYMYNGTSELRQLHEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWEAMTARKIYVFEGHEAAVYSVCPHHKESIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFLVEWNESEGAIKNTYNGFRKRSINVIQFDTTRNRFLAAGDDFSIKIWDMDNINLLTTIDADSGLPPSPRLRFNKEGTLLAVTTQDNSIRILANNDGLRLLNRAIEKVNEVKPAVNTLAAVSGVTAPVVAVDRNGAENSRAVEVKPRADEGIDKKNWKLADLTEQAHCRSIRLGDQMAASKVLRLIYTNAGNALLALGSNAIHKLWKWQKNDWNVAGKATANFAPQLWQPQSAGFMTNDVGETDPEEAVPCIALSKNDSYVMSASGGKVLLFNMMTFKIMTQFMPPPPAATFLAFHPQDNNFIAIGMEDSVIHIYNVRVDEVKTKLKGHSKRITGLAFSNNLNILVSSGADGQLCVWGTDAWDKRKSKFIQMPPGKDATPTGDTRVQFDVDQTRLLIVHETQLAIYDATKLESIHQATIHDIVSFQWYLRDPFPASVSSATFSCDSELVYAAFIDGSVGVFETDGLRPRCRLAPSTYLPPGASGTSVYPLAISAHPTEKYQFALGLSDGGVLVVEPLEPDGKWGPIPVTDNGAAASGATGVPPPADQNAEQSGARAS