Information report for SELMODRAFT_60241
Gene Details
|
|
Functional Annotation
- Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.
Homologous
- Beta vulgaris: BVRB_1g004420
- Brassica napus: BnaA03G0222900ZS, BnaC03G0262000ZS, BnaC04G0609100ZS, BnaA04G0290800ZS
- Brassica rapa: Bra000409
- Gossypium hirsutum: Gohir.D07G147500, Gohir.A12G108600, Gohir.D12G111700
- Manihot esculenta: MANES_01G255300
- Nicotiana attenuata: A4A49_17779
Gene Resources
- Pfam: PF00271 PF00176
- UniProt: D8R3Z3
- RefSeq: XP_002965951.1
- EMBL: GL377571
- AlphaFoldDB: D8R3Z3
- KEGG: smo:SELMODRAFT_60241
- InterPro: IPR000330 , IPR001487 , IPR001650 , IPR014001 , IPR027417 , IPR036427 , IPR038718 , IPR049730
- PANTHER: PTHR10799
- SUPFAM: SSF47370 , SSF52540
- PROSITE: PS50014 , PS51192 , PS51194
- Gene3D: 1.20.920.10 , 3.40.50.10810 , 3.40.50.300
- CDD: cd04369 , cd18793
- eggNOG: KOG0386
- STRING: 88036.D8R3Z3
- HOGENOM: CLU_000942_1_0_1
Sequences
CDS Sequence
- >SELMODRAFT_60241
AGGTACTATACTCTGGCTCATGCAGTGAACGAGCAAATATTGAGGCAGCCGTCAATGCTTCGGGCGGGAATATTACGTGACTATCAGCTGGTCGGTCTTCAATGGATGCTTTCTTTGTACAATAACAGACTAAATGGTATCCTTGCCGATGAAATGGGATTGGGAAAGACTGTACAGGTTATGGCGCTCATTGCATACTTGATGGAGTTCAAAGGAAATTACGGACCACATCTTATTATTGTTCCCAACGCAGTCATAGTGAACTGGAAGAGTGAGCTGCTCCGATGGTTGCCTTCCGTGAGCTCCATATTTTATGTTGGTGTAAGAGAAGACCGCTCTAGGATTTACTCACAGGAAGTTGCTGCATTGAAGTTCAATGTTCTAGTTACTACGTACGAGTTTATAATGCGCGACAGATCAAAACTAGCAAAAGTTGATTGGAAGTATATTATTATAGACGAGGCTCAGCGTATGAAAGATCGAGAGTCCCGTCTTGCTCGTGACTTGGATCGTTTTCGCTGTCAAAGGCGGCTGCTTCTAACCGGTACCCCTCTGCAAAACGATCTACATGAGCTGTGGTCACTTTTAAATCTACTCCTTCCTGAAGTCTTTGACAACAGTAAAGCTTTTCACGACTGGTTCTCAAAGCCATTCCAAAGAGATGCCAATACAGTTGAGGATGATTGGCTTGAAACGGAAAAGAAAGTCATCGTTATTCACCGGCTGCATCAAATACTTGAGCCCTTTATGCTTAGACGGCGGGTTGAAGATGTCGAGGGGTCTCTTCCGCCCAAGGTCCCTGTTGTTTTGAAGTGTAAAATGTCATCTTTTCAAGCAGCAATATACGACTGGGTGAAGGCAACTGGTACTATTCGTCTGGATCCAGCAGATGAGGAAGAAAGGGTGGCTAGTGGCAATGGCAAGCGACAGGCCAGGGCTTATGCTCCGTTACAGAACAAGTGCATGGAGCTGAGAAAAGTGTGCAACCATCCTTATCTTAATTATCCTCCACACTGTCGACTCTTCAACGAGAACATGGTTCGGATGTGTGGAAAACTTTGGATACTTGATAGGATATTGATCAAGCTACAGAGGTCGGGCCACCGGGTTTTACTCTTCAGCACAATGACGAAGTTGCTAGATATCCTGGAGGATTACCTACAGTGGCGTGGTCTGATATATCGACGAATTGATGGGACAACCCCTCTGGACTCCCGAGAAACTGCTATTGTGGACTTCAATGCGCCTGGTTCCCAGTGCTTCATCTTTTTGCTCAGCATCCGGGCAGCAGGTCGTGGTTTGAATCTCCAGACAGCAGATACAGTGGTTATATACGATCCTGATCCAAATCCAAAGAACGAGGAGCAGGCTGTAGCACGAGCTCATCGTATCGGACAGAAGTCAGAGGTGAAGGTGATATACATGGAAGCTGTTGTGGAGTCGTTCACCAGCTATCAAATGGAGGACGAGCTCCGAAATGGAGGTTCCCTGGACGTTGACGATGATATGGCGGGGAAGGATAGATACATGGGGTCCGTAGAAAGCCTTGTCCGGAATAATATTCAGCAGCACAAGATAGATATGGCCGATGAAGTGATCAATGCTGGCCGTTTCGATCAGAGGACTACACACGAAGAGCGTCGCATGACGTTGGAAGCGCTCTTGCATGACGAGGAGAGATATCAGGAGTCGGTTCACGATGTTCCAACGTTGAAAGAAGTGAACAGGATGATTGCCAGGAGTGAAGAAGAAGTCGAGCTTTTCGATCAAATGGACGAAGAATGTGACTGGCCTGGTGAAATGGTTGCATACGACGAGGTCCCGGAGTGGCTTCACGTTGGCTCGGACGAGGTGAATGCAGCTATCAAAGCTACGTCCAAGCAGGCATTAAAGGCGTTGTCAAGAAAGAACTTCACTGTGATACACGATCACAAGGGACTCAAGCCGGCAAGACGAGGTCGACCTCCATTTGAGGTGAAGGTTCCGCCTACAGAAATAGAGGACGACGAAGATCTCGAAGAAGTTGTTGTAGAGGAAGAGTCTTCATCCGGAGAAGATGAGGAAGAAGGTGAAATAAGGGACGGCTCTGATGAGGAGGAAGACGATACTGGGCGGCAGCAACAGGATGATGCTGATGAGATGGATGACGAAGCAGAAGCTGTAGCAGAATCGTCTGACGAAAGAGAAGGAAGTCCAGAACCACGAGTTGAATTACAAGTGGTAGACTCCAAAAAGTTTGGATCGCTGGCGGCGTTGGGAAGCAGATCTAACCAAGACCTTGTAAGTAGAGATTTTGATGGCGAGGATTTGGAAGAAGGTGAAATCGCGGCCTCGGGTGACTCCCCCGGAGATAGTCCTTCCGAAAAGGATCCAGACGAAGACCAGATTGTGGAGCCACGAAGAAAACGCAAGCGAAGTGCCCGTCACCGGCGCAAGGTTGGCGTTGGAGCGGGAAATGTACCTGTTCAAGGTGTATTTCCTGTTGGCTTTCTGCAAACGTGGCCGGGATACAGCGAATATGAACGTCCTGATGTATGGAGCATCACGCCTAGGCCAGCAACGTTCATTCACACTGGCTTTGCTAATTGGAGCTCGCAAGCAGCATCAAAGCAGGTAAGAGTCAATGGATTCCAAGAGCTGGCAGAAGAAGTCGCCGTCGCTGAGATGAAAGAAACTCGGACTGTTAGAGGAGGTGCAAGAATGCAGGACAACGTCCAGAAGAAGTGCAAAGCTGTCTTGAGCAAGCTGCAAGGTGCAATGAACAAGGACGGGCGACAGGTATCCGCTTTGTTAATGGAGCTTCCCAAGCGTCACGAGCTTCCAGACTACTACAAAGTCATCGACAAGCCGATTGACGCAAAAACGATCGAAGAGCACCTGGAGCGCTTCGATTATGCTACGGTGCTGGATTTCGCGGGTGACGTTCAGCTCATGCTAGACAACGCCTCCCGCTACAACACACACAACGCCGAGGTGCAGGCAGATGCTCGACGACTGCATTCACTCTTCTTCCAAAGGATGGGCTTGATGTTTCCAGACGTGGACTTCAACTCCATAAAGATCAACATCGGCATCCGCATGAGCGGCTCGAGATCATCTCGCAAGCAACGCCAGGTATTTGCAGAGGCCGGCAGATTAACGCCAGCAGCAGCACCACCACCACAGCAGGAAAAAGAGGACGACGGAACAGGTAGCGTTAGTAGAGGCAAGGATAGCAGCAGTAGAAAGAAGACGAGACCAGGTGATAGAGATAGAGGACAGGACCAAGTTACTCACCCAGCTGATCTAGTGATTTGCAAGAGGAAGAGGAACAGCCGGAGAAAG
Protein Sequence
- >SELMODRAFT_60241
RYYTLAHAVNEQILRQPSMLRAGILRDYQLVGLQWMLSLYNNRLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVIVNWKSELLRWLPSVSSIFYVGVREDRSRIYSQEVAALKFNVLVTTYEFIMRDRSKLAKVDWKYIIIDEAQRMKDRESRLARDLDRFRCQRRLLLTGTPLQNDLHELWSLLNLLLPEVFDNSKAFHDWFSKPFQRDANTVEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPPKVPVVLKCKMSSFQAAIYDWVKATGTIRLDPADEEERVASGNGKRQARAYAPLQNKCMELRKVCNHPYLNYPPHCRLFNENMVRMCGKLWILDRILIKLQRSGHRVLLFSTMTKLLDILEDYLQWRGLIYRRIDGTTPLDSRETAIVDFNAPGSQCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQKSEVKVIYMEAVVESFTSYQMEDELRNGGSLDVDDDMAGKDRYMGSVESLVRNNIQQHKIDMADEVINAGRFDQRTTHEERRMTLEALLHDEERYQESVHDVPTLKEVNRMIARSEEEVELFDQMDEECDWPGEMVAYDEVPEWLHVGSDEVNAAIKATSKQALKALSRKNFTVIHDHKGLKPARRGRPPFEVKVPPTEIEDDEDLEEVVVEEESSSGEDEEEGEIRDGSDEEEDDTGRQQQDDADEMDDEAEAVAESSDEREGSPEPRVELQVVDSKKFGSLAALGSRSNQDLVSRDFDGEDLEEGEIAASGDSPGDSPSEKDPDEDQIVEPRRKRKRSARHRRKVGVGAGNVPVQGVFPVGFLQTWPGYSEYERPDVWSITPRPATFIHTGFANWSSQAASKQVRVNGFQELAEEVAVAEMKETRTVRGGARMQDNVQKKCKAVLSKLQGAMNKDGRQVSALLMELPKRHELPDYYKVIDKPIDAKTIEEHLERFDYATVLDFAGDVQLMLDNASRYNTHNAEVQADARRLHSLFFQRMGLMFPDVDFNSIKINIGIRMSGSRSSRKQRQVFAEAGRLTPAAAPPPQQEKEDDGTGSVSRGKDSSSRKKTRPGDRDRGQDQVTHPADLVICKRKRNSRRK