Information report for SELMODRAFT_108314
Gene Details
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Functional Annotation
- Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Homologous
- Actinidia chinensis: CEY00_Acc15976
- Citrullus lanatus: Cla97C05G079940
- Gossypium hirsutum: Gohir.D07G138400, Gohir.A07G133700
- Juglans regia: Jr07_10040
- Manihot esculenta: MANES_05G015200
- Medicago truncatula: Medtr7g118350
- Musa acuminata: Ma08_g12120
- Populus trichocarpa: POPTR_002G181400v3
- Sesamum indicum: SIN_1002242
- Setaria italica: SETIT_033853mg
- Setaria viridis: SEVIR_9G565900v2
Gene Resources
- Pfam: PF00271 PF02170 PF04851 PF00636
- UniProt: D8S4F9
- EMBL: GL377601
- KEGG: smo:SELMODRAFT_108314
- OMA: CGFHKYF
- InterPro: IPR000999 , IPR001650 , IPR003100 , IPR005034 , IPR011545 , IPR014001 , IPR014720 , IPR027417 , IPR036085 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF37
- SUPFAM: SSF101690 , SSF52540 , SSF54768 , SSF69065
- PROSITE: PS00517 , PS50137 , PS50142 , PS50821 , PS51192 , PS51194 , PS51327
- Gene3D: 1.10.1520.10 , 2.170.260.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- OrthoDB: D8S4F9
- SMR: D8S4F9
- CDD: cd00593 , cd18034 , cd18802 , cd19869
- eggNOG: KOG0701
- STRING: 88036.D8S4F9
- HOGENOM: CLU_000907_4_4_1
Sequences
CDS Sequence
- >SELMODRAFT_108314
ATGGAGCCTCTCGATCGTAGAAGGAAGCCGGCTAAGAGGGTGTGCTACGAGAATAAAACACGGAGAAGGCATGGCGGCTGCAAGCGTGAACGAGAGCGAGATCCAGAGGAAGAAGGGGGGCGAGAAAAACGAGCTTACCTTGAGAAGGACGCCGATGGAAGGAACGTTCTCAAGTTTGGGATACGTGTGCCGGCTGCTAGAGGAGGTGCTGGTCCTGTCACGGAGCCGTCCACGCAGAATGGATCTGCTGGGAAAGCTGGCAAGGAAAAAGTTTGCGTGGAACAAGCTAGAGCTTATCAGCTGGAAGTTCTAAGTCAGGCCGAGGAGGGAAACACGATTGCTTTTCTTGAGACTGGTGCTGGGAAGACGCTCATCGCTGTGCTTCTGATGAAGAGAAAGGCCGAGCTGCTGCAGCGCAAGATACTTACAGTGTTTCTCGTCCCAAAAGTGCCTCTTGTGTATCAGCAAGCAGAAGTTATTCGCGAGAGAACAAACTTCAATGTGGGACACTATTGCGGTGAAATGGTTCAGGATTTCTGGGATTCTAAAAGATGGCAACGAGAGTTCCAGTCCAAAGAGGTTCTCGTAATGACAGCCCAGATCTTGCTCAACATACTAAGGCACTCCATTGTGAGAATGGAGGATATAGATTTGTTGATACTGGACGAGTGCCATCACGCTGTTAAGAAACACCCGTACTCTCTCGTTATGTCGGAGTTTTATCATCTGGCTCCAAAAGAGAAGAGGCCTAAAATCTTTGGCATGACCGCCTCTCCAGTGAACTTGAAAGGGGTTTCAAATCAAGAGGACTGCGCAGTTAAAATCAGGAATCTAGAGACTAAACTGGACTCCGTGGTTTGCACCATTCGTGATCGGAAGGAACTAGAAAAACACGTTCCTATGCCATCCGAAACCGTTGTAGAATATGACAAAGCCGCGGTGTTGTGGTCGCTTCGTGAGAAGATCAAGCAGATGAAGGAACAGGTGGAGGAAGCTTGCAGTGCGAGCTCCAAACGTACCAAATGGCAGTTTATGGGAGCCCGAGACGCAGGAGCAAGCGACGAGCTCCATTTTGTTTACGGGGTCGCTGAGCGCAAGGAAAGTGACGGCGCTGCCAACTTACTGCAGAAACTAAGATCTATCATTTTTTGTTTGGATGAACTTGGACAATGGTGCGCGTACAAGGTTGCATCTTCGTCCTTGGGGAATCTTCGACACGATGAAAGAACGGCCGATGTGAAGTACCAGGAGTTGTATTTGACGAAAATTGTAGACATGTTAAAATGTGATCTCCAACAAGGTGCCGCGAGCAGCAGCAAGCTTGAAGCGGTTCATGGAGATGTCGAGGAAGGGGAAGTAATTGATACGAACTCTCTTTCAGGCGGAGAACATTTTGACGAGGTTCTCGGGGCCGCTGTTGCAGATAAAAAGGTAACGCCTAAGGTTCAAAGTTTGATCCAGATACTTCGAAAATACGAACATGTCGAGGACTTCCGTGCTATAATCTTTGTAGATCGAGTGGTTGCTGCTCTGACGCTACCTTGCGTTTTGTCGGAGTTGCCATCACTGAAGTATGTGCGCAGTGGAAGTCTGGTCGGTCATAATAATTCTCAAGATGTGTCCACCAGACATATGCATGACAGTTTGTCTAAGTTTCGTGACGGAAGTCTTAACGTCTTGGTTGCCACGAGCGTTGCGGAAGAAGGACTGGATATTCGCCAGTGCAATGTAGTTGTTCGATTTGATCTTGCCAAAACGGTGCTGGCTTATATACAATCTCGTGGCCGTGCTCGAAAGCCCGGATCAGACTACATTTTGATGCTTGAAAAAGGAAATAAGGTTCATCAAAGTTTCCTTCGTAATGCTCGGAACAGTGAGGAAACATTACGAAAGGAGGCCACGGAAAGAACGAAACTCGATCCTTGGACAGAAGCGGCAATAGTCGCATCTCTAGAAGATGGGAAAGGAGAAACGTATCAAGTTCCTTCAACTGGGGCAATGGTCACACTCAATTCAGCAGTTGGACTGATCCACTTCTATTGCTCTCAGCTTCCAAGTGACAGATACTCGATTTTAAAACCGGAATTCGTTCTGACAAAGCATTCGACAGGAGATGTCGTTTACTTTTCTTGTAAGCTTCGGCTTCCTTCTAATGCTCCCGTGGAGTCTTTCGATGGGCCCGTATGCTCAACTATGAAGGGAGCACAACAGGCTGTGTGCTTGGAGGCATGCAAAAAGCTACACGAGATGGCAGCGTTTACAGATATGCTTTTGCCAGACACGGGTACACCAGACAAGTCCGACAAAGGCGAAGATAACGAAACTACAGATCCCATTCCAGGAACAGCTCGATATCGAGAGTATTTTCCTGAGGGGATTGCAGATTTTTTGAAGGGCGATTGGATCCTAAACACAAATTATTTGCTTTCTACGTCGCTATATATGTACATCATTCAATATTCGAACGTTGGATTTTCAACTGATCCTCTTGTAACACAAACTTCTGATTTTGCGGTCCTCTTCGGCAGGGAAATGGATCCAGAAGTTTTGACGGCATCGGTAGATCTTTTCGTAGCACGAACACTAACTACACAAGCATCGTTAGTCTTTTCTGGAGTTCACCATATCACATCGTCAGAGCTCACATTGTTGAAGGCATTTCACGTTCGACTTATGAGTATCGTTCTGGACGTGGATGTGGAACCTGCATCGACACCTTGGGATTCAAATAAAGCATACCTCTTCGTTCCATTAACATCAAGCTGCACAAAACAGATCGATTGGGCTCTAATGAACAAAGTTCTTGGTTCCCATGCATGGTCAAGTCCACTTCAGAGAGCAAGGCCGGATGTTTTCCTGGGAACCAACGAGAGAGCCTTGGGTGGCGATAGAAGAGAATACGGCTTCAGCAAACTTCGATCCAACGGGGTTCAGAAGCATCCTACTTATGGGATTCGGGGAGCTGTGGCTGAGTTTGACGTTATCAAGGCTTCTGGGATAGCTCCTTTACGGGAAAAACTGGAGCCTGAAGGAAGACAGTTGCTGTTGGCCGATGGCTATGCTAATATGGACGAAATGGACGGTAAACTTGTCACTGCGGCTCATTCCGGGAAACGGTTCTACGTAGAATCCGTGATGAGGGAGATGACTGCCGAGTCTCCATTTCCACGCAAAGAAGGCTACCTGGGGTCGGTGGAGTACAGCTCGTATGCAGATTATTACGAGCAGAAGTATGGAGTTCGTCTACATTGCCGACACCAGCCTATGCTTCGCTGTCGTGGGGTTTCGCATTGCAAAAATCTTCTCTCGCCTCGGTTTAAACTACTAGAGAGCTCGGAGGAACTCTCAGATAAAACGTACTACGTCATGTTACCTCCTGAGATTTGCCTTGTGCATCCTCTTCCAGGTTGCCTGGTTCGAGGAGCGCAGCGATTGCCTTCAGTGATGAAACGCGTGGAGAGCATTTTACTCGCAGTGCAGCTGAAGCACGAGATTGGTTTTCCCATTCCAGCTGCGAAGGTTTTGGAAGCTTTGACGGCCGCATCTTGCCAAGAAACATTCTCCTACGAACGAGCCGAGCTTCTTGGAGATGCATATTTGAAGTGGGTCGTCAGTAGGAGACTCTTCATTAAGCATCCTAGAAAACACGAGGGTCAACTTACAAGGATGCGACAACAAACTGTCAGTAACATGGTACTTTACGAGTTCGCTATTTCGAAGAGCTTGCAGAGCTACATTCAGTCGGACAGATTTGCTCCTTCTCGTTGGGCTGCTCCGGGAGTTCCCCCTGTCTTTGATGAAGATCTCAAGGACGCCAACTTAGACAATGAAGCAGCAGAGGTTCCCAAAGCTAACGAGCATGAAGAGAGGTCTACCAAAAGCAGTGGAGAGGAAGAAGTTTTAGATGATTCAACGAGCTTGGAAGATGGCGAGGCTGAATGGGATTCAAGCTCCTACAGGGTTTTATCAAGCAAAACGTTGGCTGATGTGGTGGAAGCCTTGATAGGTGTTTATTACGTCGAAGGTGGTACGAAGGCAGCAGCTCATTTTATGAATTGGATCAACATTCCAATCGACTATGACGAGGCTGAGGCTAATGCGGCAAGAGCTGGCTGCTCTGTCCCCGACTCGGTGATGAACAGCATCGACTTCGAGAAATTGGAGCTTGCCATTGGATACAAATTCCAGATGAAAAGCGTACTTGTGGAAGCTATATCTCACGCGTCTCGGCCATCAGCTGGAGTGCCGTGCTACCAGAGACTGGAGTTTGTGGGTGACGCCGTCCTAGATCATCTTATAACTCGGTATCTCTTCTTCCGCTACCAGGATTTGCCACCGGGACGTTTAACTGATCTACGCGCAGCAGCTGTAAACAACGAAAACTTCGCAAGGATATCCGTGAAGCACTCTTTTCACCTCCACTTGCGCCATGGATCGTCAGCGTTAGAGGCACAGATCAAAGATTTTGTGAAAGACATACAGTCCGAGCTCGACAAGCCTGGCATCAACTCTTTCGGGATTGGTGATTTCAAAGCTCCGAAAGTCCTAGGGGACATTCTAGAATCTATAGCCGGTGCAATATTTCTCGACACTGGTCTGGCCGCTGATGAAGTCTGGAAGGTCTTCGAGCGCTTGCTCGAGCCAATGGTAACTCCAGACACCTTGCCGGTTCATCCCGTGAGAGAACTCCAAGAGAGATGCCAGCAGCAAGCCGAGGGACTGGAATACCGGGCCTCGAGAGAAGGAAGCATTGCGACAGTGGAGGTGTTCGTGGATGGCGTCCAGATTGGCTGCGCACAGAACACACAGAAGAAGATGGCGCAAAAGCTGGCTGCAAGGAACGCGTTGGCGGCGCTCAAGGAGAGGGACTCGCTTGAGGAAGAGAGCAACAAGGTGACCAAGATGGAGAACGACAAGGCCAACGCTTTCACAAGGCAGACGCTCAACGACATTTGCTTACAGCGGCAGTGGCCAATGCCGCAGTACAGGCTGCTGAGCGAGAGTGGACCGGCGCATGCCAAGAGATTTACTTACACAGTGCGTGTAAATACGAGGGAGCGCGGATGGACTGACGAATGCGAAGGCCAGGCGATGCCCAGCATGAAGAAAGCAAAGGACTCGGCGGCCTTGGTTTTGCTAGAGGTACTCAAACAGTGGGACGACATAAAGGCACCCCTCAAGCCCTAA
Protein Sequence
- >SELMODRAFT_108314
MEPLDRRRKPAKRVCYENKTRRRHGGCKRERERDPEEEGGREKRAYLEKDADGRNVLKFGIRVPAARGGAGPVTEPSTQNGSAGKAGKEKVCVEQARAYQLEVLSQAEEGNTIAFLETGAGKTLIAVLLMKRKAELLQRKILTVFLVPKVPLVYQQAEVIRERTNFNVGHYCGEMVQDFWDSKRWQREFQSKEVLVMTAQILLNILRHSIVRMEDIDLLILDECHHAVKKHPYSLVMSEFYHLAPKEKRPKIFGMTASPVNLKGVSNQEDCAVKIRNLETKLDSVVCTIRDRKELEKHVPMPSETVVEYDKAAVLWSLREKIKQMKEQVEEACSASSKRTKWQFMGARDAGASDELHFVYGVAERKESDGAANLLQKLRSIIFCLDELGQWCAYKVASSSLGNLRHDERTADVKYQELYLTKIVDMLKCDLQQGAASSSKLEAVHGDVEEGEVIDTNSLSGGEHFDEVLGAAVADKKVTPKVQSLIQILRKYEHVEDFRAIIFVDRVVAALTLPCVLSELPSLKYVRSGSLVGHNNSQDVSTRHMHDSLSKFRDGSLNVLVATSVAEEGLDIRQCNVVVRFDLAKTVLAYIQSRGRARKPGSDYILMLEKGNKVHQSFLRNARNSEETLRKEATERTKLDPWTEAAIVASLEDGKGETYQVPSTGAMVTLNSAVGLIHFYCSQLPSDRYSILKPEFVLTKHSTGDVVYFSCKLRLPSNAPVESFDGPVCSTMKGAQQAVCLEACKKLHEMAAFTDMLLPDTGTPDKSDKGEDNETTDPIPGTARYREYFPEGIADFLKGDWILNTNYLLSTSLYMYIIQYSNVGFSTDPLVTQTSDFAVLFGREMDPEVLTASVDLFVARTLTTQASLVFSGVHHITSSELTLLKAFHVRLMSIVLDVDVEPASTPWDSNKAYLFVPLTSSCTKQIDWALMNKVLGSHAWSSPLQRARPDVFLGTNERALGGDRREYGFSKLRSNGVQKHPTYGIRGAVAEFDVIKASGIAPLREKLEPEGRQLLLADGYANMDEMDGKLVTAAHSGKRFYVESVMREMTAESPFPRKEGYLGSVEYSSYADYYEQKYGVRLHCRHQPMLRCRGVSHCKNLLSPRFKLLESSEELSDKTYYVMLPPEICLVHPLPGCLVRGAQRLPSVMKRVESILLAVQLKHEIGFPIPAAKVLEALTAASCQETFSYERAELLGDAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLYEFAISKSLQSYIQSDRFAPSRWAAPGVPPVFDEDLKDANLDNEAAEVPKANEHEERSTKSSGEEEVLDDSTSLEDGEAEWDSSSYRVLSSKTLADVVEALIGVYYVEGGTKAAAHFMNWINIPIDYDEAEANAARAGCSVPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVHPVRELQERCQQQAEGLEYRASREGSIATVEVFVDGVQIGCAQNTQKKMAQKLAARNALAALKERDSLEEESNKVTKMENDKANAFTRQTLNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDSAALVLLEVLKQWDDIKAPLKP